RNA–Protein interactions for RNA: ENST00000595756.1

HOMER3-208, Transcript of homer scaffold protein 3, human

TSL 2

Gene HOMER3, Length 570 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HOMER3-208	ENST00000595756	TMEM230	Q96A57	120 aa		13.66	□□□□□ -0.22
HOMER3-208	ENST00000595756	TM2D3	Q9BRN9	247 aa		13.66	□□□□□ -0.22
HOMER3-208	ENST00000595756	SIGLEC8	Q9NYZ4	499 aa		13.66	□□□□□ -0.22
HOMER3-208	ENST00000595756	FAM223B	A6NKX1	122 aa		13.65	□□□□□ -0.22
HOMER3-208	ENST00000595756	UPK1B	O75841	260 aa		13.65	□□□□□ -0.22
HOMER3-208	ENST00000595756	APELA	P0DMC3	54 aa		13.65	□□□□□ -0.22
HOMER3-208	ENST00000595756	SYNJ2BP	P57105	145 aa		13.65	□□□□□ -0.22
HOMER3-208	ENST00000595756	IL34	Q6ZMJ4	242 aa		13.65	□□□□□ -0.22
HOMER3-208	ENST00000595756	FAM223A	Q8IWN6	122 aa		13.65	□□□□□ -0.22
HOMER3-208	ENST00000595756	OR1L8	Q8NGR8	309 aa		13.65	□□□□□ -0.22
HOMER3-208	ENST00000595756	OR5B3	Q8NH48	314 aa		13.65	□□□□□ -0.22
HOMER3-208	ENST00000595756	RNASE11	Q8TAA1	199 aa	Known RBP	13.65	□□□□□ -0.22
HOMER3-208	ENST00000595756	TMEM56	Q96MV1	263 aa		13.65	□□□□□ -0.22
HOMER3-208	ENST00000595756	TMEM56-RWDD3	S4R434	201 aa		13.65	□□□□□ -0.22
HOMER3-208	ENST00000595756	DHFR	P00374	187 aa		13.64	□□□□□ -0.23
HOMER3-208	ENST00000595756	TRBV12-3	P01733	135 aa		13.64	□□□□□ -0.23
HOMER3-208	ENST00000595756	TMEM187	Q14656	261 aa		13.64	□□□□□ -0.23
HOMER3-208	ENST00000595756	RPEL1	Q2QD12	228 aa		13.64	□□□□□ -0.23
HOMER3-208	ENST00000595756	LGI3	Q8N145	548 aa		13.64	□□□□□ -0.23
HOMER3-208	ENST00000595756	TTC9C	Q8N5M4	171 aa		13.64	□□□□□ -0.23
HOMER3-208	ENST00000595756	FYTTD1	Q96QD9	318 aa	Known RBP	13.64	□□□□□ -0.23
HOMER3-208	ENST00000595756	QTRT1	Q9BXR0	403 aa	Known RBP	13.64	□□□□□ -0.23
HOMER3-208	ENST00000595756	C19orf73	Q9NVV2	129 aa		13.64	□□□□□ -0.23
HOMER3-208	ENST00000595756	CACFD1	Q9UGQ2	172 aa		13.64	□□□□□ -0.23
HOMER3-208	ENST00000595756	ZNF257	Q9Y2Q1	563 aa		13.64	□□□□□ -0.23
HOMER3-208	ENST00000595756	TRBV9	A0A0B4J1U6	114 aa		13.63	□□□□□ -0.23
HOMER3-208	ENST00000595756	TRAV3	A0A0B4J244	114 aa		13.63	□□□□□ -0.23
HOMER3-208	ENST00000595756	C15orf61	A6NNL5	157 aa		13.63	□□□□□ -0.23
HOMER3-208	ENST00000595756	RBMXL2	O75526	392 aa	Known RBP	13.63	□□□□□ -0.23
HOMER3-208	ENST00000595756	BTC	P35070	178 aa		13.63	□□□□□ -0.23
HOMER3-208	ENST00000595756	OR2B8P	P59922	312 aa		13.63	□□□□□ -0.23
HOMER3-208	ENST00000595756	ASAH1	Q13510	395 aa		13.63	□□□□□ -0.23
HOMER3-208	ENST00000595756	TATDN3	Q17R31	274 aa		13.63	□□□□□ -0.23
HOMER3-208	ENST00000595756	CASC10	Q5T4H9	136 aa		13.63	□□□□□ -0.23
HOMER3-208	ENST00000595756	LCN12	Q6JVE5	192 aa		13.63	□□□□□ -0.23
HOMER3-208	ENST00000595756	LSM10	Q969L4	123 aa	Known RBP	13.63	□□□□□ -0.23
HOMER3-208	ENST00000595756	TMEM14B	Q9NUH8	114 aa		13.63	□□□□□ -0.23
HOMER3-208	ENST00000595756	OR51B2	Q9Y5P1	312 aa		13.63	□□□□□ -0.23
HOMER3-208	ENST00000595756	DNAH1	Q9P2D7	4330 aa		13.62	□□□□□ -0.23
HOMER3-208	ENST00000595756	TEX50	A0A1B0GTY4	177 aa		13.62	□□□□□ -0.23
HOMER3-208	ENST00000595756	DUXB	A0A1W2PPF3	345 aa		13.62	□□□□□ -0.23
HOMER3-208	ENST00000595756	NPIPB5	A8MRT5	1133 aa		13.62	□□□□□ -0.23
HOMER3-208	ENST00000595756	TEX22	C9J3V5	150 aa		13.62	□□□□□ -0.23
HOMER3-208	ENST00000595756	CSN3	P07498	182 aa		13.62	□□□□□ -0.23
HOMER3-208	ENST00000595756	TRAPPC2	P0DI81	140 aa		13.62	□□□□□ -0.23
HOMER3-208	ENST00000595756	TRAPPC2B	P0DI82	140 aa		13.62	□□□□□ -0.23
HOMER3-208	ENST00000595756	VAMP1	P23763	118 aa		13.62	□□□□□ -0.23
HOMER3-208	ENST00000595756	DEFA1	P59665	94 aa		13.62	□□□□□ -0.23
HOMER3-208	ENST00000595756	DEFA3	P59666	94 aa		13.62	□□□□□ -0.23
HOMER3-208	ENST00000595756	SUPT4H1	P63272	117 aa	Known RBP	13.62	□□□□□ -0.23
HOMER3-208	ENST00000595756	RHOG	P84095	191 aa		13.62	□□□□□ -0.23
HOMER3-208	ENST00000595756	EXOSC2	Q13868	293 aa	Known RBP	13.62	□□□□□ -0.23
HOMER3-208	ENST00000595756	FAM209B	Q5JX69	171 aa		13.62	□□□□□ -0.23
HOMER3-208	ENST00000595756	C10orf55	Q5SWW7	151 aa		13.62	□□□□□ -0.23
HOMER3-208	ENST00000595756	TMEM268	Q5VZI3	342 aa		13.62	□□□□□ -0.23
HOMER3-208	ENST00000595756	SELENOH	Q8IZQ5	122 aa	Known RBP	13.62	□□□□□ -0.23
HOMER3-208	ENST00000595756	CITED4	Q96RK1	184 aa		13.62	□□□□□ -0.23
HOMER3-208	ENST00000595756	PEMT	Q9UBM1	199 aa		13.62	□□□□□ -0.23
HOMER3-208	ENST00000595756		A0A0B4J2A0	478 aa		13.61	□□□□□ -0.23
HOMER3-208	ENST00000595756	FAM240B	A0A1B0GVZ2	78 aa		13.61	□□□□□ -0.23
HOMER3-208	ENST00000595756	CYB5B	O43169	146 aa		13.61	□□□□□ -0.23
HOMER3-208	ENST00000595756	SFT2D2	O95562	160 aa		13.61	□□□□□ -0.23
HOMER3-208	ENST00000595756	IGKV1-5	P01602	117 aa		13.61	□□□□□ -0.23
HOMER3-208	ENST00000595756		P0C879	139 aa		13.61	□□□□□ -0.23
HOMER3-208	ENST00000595756	HSPE1	P61604	102 aa	Known RBP	13.61	□□□□□ -0.23
HOMER3-208	ENST00000595756	GTSCR1	Q86UQ5	136 aa		13.61	□□□□□ -0.23
HOMER3-208	ENST00000595756	OR2K2	Q8NGT1	345 aa		13.61	□□□□□ -0.23
HOMER3-208	ENST00000595756	PDCD10	Q9BUL8	212 aa		13.61	□□□□□ -0.23
HOMER3-208	ENST00000595756	NDUFA4L2	Q9NRX3	87 aa		13.61	□□□□□ -0.23
HOMER3-208	ENST00000595756	SHPK	Q9UHJ6	478 aa		13.61	□□□□□ -0.23
HOMER3-208	ENST00000595756	NSG2	Q9Y328	171 aa		13.61	□□□□□ -0.23
HOMER3-208	ENST00000595756	RBM14-RBM4	A0A0A0MSL8	147 aa	Known RBP	13.6	□□□□□ -0.23
HOMER3-208	ENST00000595756	HMX3	A6NHT5	357 aa		13.6	□□□□□ -0.23
HOMER3-208	ENST00000595756		E7EUB6	86 aa		13.6	□□□□□ -0.23
HOMER3-208	ENST00000595756	BMPR1B	O00238	502 aa		13.6	□□□□□ -0.23
HOMER3-208	ENST00000595756	TCRB	P04435	133 aa		13.6	□□□□□ -0.23
HOMER3-208	ENST00000595756	CRYGC	P07315	174 aa		13.6	□□□□□ -0.23
HOMER3-208	ENST00000595756	HIST1H1B	P16401	226 aa	Known RBP	13.6	□□□□□ -0.23
HOMER3-208	ENST00000595756	ATP5G2	Q06055	141 aa		13.6	□□□□□ -0.23
HOMER3-208	ENST00000595756	LRTM2	Q8N967	370 aa		13.6	□□□□□ -0.23
HOMER3-208	ENST00000595756	NECAP1	Q8NC96	275 aa		13.6	□□□□□ -0.23
HOMER3-208	ENST00000595756	LHFPL5	Q8TAF8	219 aa		13.6	□□□□□ -0.23
HOMER3-208	ENST00000595756	CTNNBIP1	Q9NSA3	81 aa	Predicted RBP	13.6	□□□□□ -0.23
HOMER3-208	ENST00000595756	PRH1	P02810	166 aa		13.59	□□□□□ -0.23
HOMER3-208	ENST00000595756	PSMB6	P28072	239 aa		13.59	□□□□□ -0.23
HOMER3-208	ENST00000595756	PPP1R1A	Q13522	171 aa		13.59	□□□□□ -0.23
HOMER3-208	ENST00000595756	SLC35G3	Q8N808	338 aa		13.59	□□□□□ -0.23
HOMER3-208	ENST00000595756	SPATA25	Q9BR10	227 aa		13.59	□□□□□ -0.23
HOMER3-208	ENST00000595756	C20orf85	Q9H1P6	137 aa		13.59	□□□□□ -0.23
HOMER3-208	ENST00000595756	TBC1D24	Q9ULP9	559 aa		13.59	□□□□□ -0.23
HOMER3-208	ENST00000595756	FLVCR2	Q9UPI3	526 aa		13.59	□□□□□ -0.23
HOMER3-208	ENST00000595756	CGB1	A6NKQ9	187 aa		13.58	□□□□□ -0.24
HOMER3-208	ENST00000595756	HLA-A	P01891	365 aa	Known RBP	13.58	□□□□□ -0.24
HOMER3-208	ENST00000595756	OR4E1	P0C645	316 aa		13.58	□□□□□ -0.24
HOMER3-208	ENST00000595756	DEFA4	P12838	97 aa		13.58	□□□□□ -0.24
HOMER3-208	ENST00000595756	LYL1	P12980	280 aa		13.58	□□□□□ -0.24
HOMER3-208	ENST00000595756	MYOD1	P15172	320 aa		13.58	□□□□□ -0.24
HOMER3-208	ENST00000595756	CTRB1	P17538	263 aa		13.58	□□□□□ -0.24
HOMER3-208	ENST00000595756	PRCD	Q00LT1	54 aa		13.58	□□□□□ -0.24
HOMER3-208	ENST00000595756	C15orf32	Q32M92	178 aa		13.58	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms