RNA–Protein interactions for RNA: ENST00000594862.1

SHKBP1-204, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 623 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-204ENST00000594862 IGKV1-39P01597 117 aa13.46□□□□□ -0.25
SHKBP1-204ENST00000594862 IGKV1D-39P04432 117 aa13.46□□□□□ -0.25
SHKBP1-204ENST00000594862 FOLR2P14207 255 aa13.46□□□□□ -0.25
SHKBP1-204ENST00000594862 PI3P19957 117 aa13.46□□□□□ -0.25
SHKBP1-204ENST00000594862 ELLP55199 621 aaPredicted RBP13.46□□□□□ -0.25
SHKBP1-204ENST00000594862 HSPE1P61604 102 aaKnown RBP13.46□□□□□ -0.25
SHKBP1-204ENST00000594862 TRIM16LQ309B1 348 aa13.46□□□□□ -0.25
SHKBP1-204ENST00000594862 ZNF114Q8NC26 417 aa13.46□□□□□ -0.25
SHKBP1-204ENST00000594862 BSCL2Q96G97 398 aaPredicted RBP13.46□□□□□ -0.25
SHKBP1-204ENST00000594862 PDCD10Q9BUL8 212 aa13.46□□□□□ -0.25
SHKBP1-204ENST00000594862 NXF2Q9GZY0 626 aaKnown RBP13.46□□□□□ -0.25
SHKBP1-204ENST00000594862 PLEKHA3Q9HB20 300 aa13.46□□□□□ -0.25
SHKBP1-204ENST00000594862 UFC1Q9Y3C8 167 aa13.46□□□□□ -0.25
SHKBP1-204ENST00000594862 S4R3C0 116 aa13.46□□□□□ -0.25
SHKBP1-204ENST00000594862 ZNF320A2RRD8 509 aa13.45□□□□□ -0.26
SHKBP1-204ENST00000594862 TGOLN2O43493 480 aa13.45□□□□□ -0.26
SHKBP1-204ENST00000594862 HLA-AP01891 365 aaKnown RBP13.45□□□□□ -0.26
SHKBP1-204ENST00000594862 IGHV4-30-4P0DP06 118 aa13.45□□□□□ -0.26
SHKBP1-204ENST00000594862 UCP1P25874 307 aa13.45□□□□□ -0.26
SHKBP1-204ENST00000594862 ERHP84090 104 aaKnown RBP13.45□□□□□ -0.26
SHKBP1-204ENST00000594862 Q8N1Y9 231 aa13.45□□□□□ -0.26
SHKBP1-204ENST00000594862 RNASE11Q8TAA1 199 aaKnown RBP13.45□□□□□ -0.26
SHKBP1-204ENST00000594862 MARCH1Q8TCQ1 289 aa13.45□□□□□ -0.26
SHKBP1-204ENST00000594862 RRNAD1Q96FB5 475 aaKnown RBP13.45□□□□□ -0.26
SHKBP1-204ENST00000594862 SCGB3A2Q96PL1 93 aa13.45□□□□□ -0.26
SHKBP1-204ENST00000594862 TP53RKQ96S44 253 aa13.45□□□□□ -0.26
SHKBP1-204ENST00000594862 ZMAT4Q9H898 229 aa13.45□□□□□ -0.26
SHKBP1-204ENST00000594862 ZC4H2Q9NQZ6 224 aa13.45□□□□□ -0.26
SHKBP1-204ENST00000594862 SLC2A8Q9NY64 477 aa13.45□□□□□ -0.26
SHKBP1-204ENST00000594862 C21orf62Q9NYP8 219 aa13.45□□□□□ -0.26
SHKBP1-204ENST00000594862 SCP2D1Q9UJQ7 156 aa13.45□□□□□ -0.26
SHKBP1-204ENST00000594862 ANKRD20A5PA0PJZ0 165 aa13.44□□□□□ -0.26
SHKBP1-204ENST00000594862 FABP12A6NFH5 140 aa13.44□□□□□ -0.26
SHKBP1-204ENST00000594862 CCDC160A6NGH7 325 aa13.44□□□□□ -0.26
SHKBP1-204ENST00000594862 CBLN1P23435 193 aa13.44□□□□□ -0.26
SHKBP1-204ENST00000594862 DEFB114Q30KQ6 69 aa13.44□□□□□ -0.26
SHKBP1-204ENST00000594862 CD300EQ496F6 205 aaPredicted RBP13.44□□□□□ -0.26
SHKBP1-204ENST00000594862 FAM219AQ8IW50 185 aa13.44□□□□□ -0.26
SHKBP1-204ENST00000594862 OR2C3Q8N628 320 aa13.44□□□□□ -0.26
SHKBP1-204ENST00000594862 OR4C16Q8NGL9 310 aa13.44□□□□□ -0.26
SHKBP1-204ENST00000594862 ASCL2Q99929 193 aa13.44□□□□□ -0.26
SHKBP1-204ENST00000594862 THAP7Q9BT49 309 aaPredicted RBP13.44□□□□□ -0.26
SHKBP1-204ENST00000594862 CEPT1Q9Y6K0 416 aa13.44□□□□□ -0.26
SHKBP1-204ENST00000594862 TEX13DA0A0J9YY54 714 aaPredicted RBP13.43□□□□□ -0.26
SHKBP1-204ENST00000594862 TMEM213A2RRL7 107 aa13.43□□□□□ -0.26
SHKBP1-204ENST00000594862 DBX1A6NMT0 343 aa13.43□□□□□ -0.26
SHKBP1-204ENST00000594862 ZNF701M0R085 212 aaPredicted RBP13.43□□□□□ -0.26
SHKBP1-204ENST00000594862 TNFSF8P32971 234 aa13.43□□□□□ -0.26
SHKBP1-204ENST00000594862 FAUP35544 74 aaKnown RBP13.43□□□□□ -0.26
SHKBP1-204ENST00000594862 DHODHQ02127 395 aa13.43□□□□□ -0.26
SHKBP1-204ENST00000594862 SLC35G3Q8N808 338 aa13.43□□□□□ -0.26
SHKBP1-204ENST00000594862 SCARB1Q8WTV0 552 aa13.43□□□□□ -0.26
SHKBP1-204ENST00000594862 ZNF436Q9C0F3 470 aaPredicted RBP13.43□□□□□ -0.26
SHKBP1-204ENST00000594862 TMEM222Q9H0R3 208 aa13.43□□□□□ -0.26
SHKBP1-204ENST00000594862 C19orf73Q9NVV2 129 aa13.43□□□□□ -0.26
SHKBP1-204ENST00000594862 CACFD1Q9UGQ2 172 aa13.43□□□□□ -0.26
SHKBP1-204ENST00000594862 INS-IGF2F8WCM5 200 aa13.42□□□□□ -0.26
SHKBP1-204ENST00000594862 IGKV1-5P01602 117 aa13.42□□□□□ -0.26
SHKBP1-204ENST00000594862 P0C879 139 aa13.42□□□□□ -0.26
SHKBP1-204ENST00000594862 S100A5P33763 92 aa13.42□□□□□ -0.26
SHKBP1-204ENST00000594862 AP3S2P59780 193 aa13.42□□□□□ -0.26
SHKBP1-204ENST00000594862 ZNF57Q68EA5 555 aaPredicted RBP13.42□□□□□ -0.26
SHKBP1-204ENST00000594862 ADAMTSL5Q6ZMM2 481 aa13.42□□□□□ -0.26
SHKBP1-204ENST00000594862 TMEM190Q8WZ59 177 aa13.42□□□□□ -0.26
SHKBP1-204ENST00000594862 TXN2Q99757 166 aa13.42□□□□□ -0.26
SHKBP1-204ENST00000594862 NAA60Q9H7X0 242 aa13.42□□□□□ -0.26
SHKBP1-204ENST00000594862 MRPL27Q9P0M9 148 aaKnown RBP13.42□□□□□ -0.26
SHKBP1-204ENST00000594862 RYR3Q15413 4870 aa13.42□□□□□ -0.26
SHKBP1-204ENST00000594862 TRAV25A0A0B4J276 109 aa13.41□□□□□ -0.26
SHKBP1-204ENST00000594862 PIGBOS1A0A0B4J2F0 54 aa13.41□□□□□ -0.26
SHKBP1-204ENST00000594862 OR2T8A6NH00 312 aa13.41□□□□□ -0.26
SHKBP1-204ENST00000594862 K7EIM0 57 aa13.41□□□□□ -0.26
SHKBP1-204ENST00000594862 CORTO00230 105 aa13.41□□□□□ -0.26
SHKBP1-204ENST00000594862 NDUFA4O00483 81 aa13.41□□□□□ -0.26
SHKBP1-204ENST00000594862 IFNA17P01571 189 aa13.41□□□□□ -0.26
SHKBP1-204ENST00000594862 FCGR2BP31994 310 aaPredicted RBP13.41□□□□□ -0.26
SHKBP1-204ENST00000594862 SNCAP37840 140 aa13.41□□□□□ -0.26
SHKBP1-204ENST00000594862 SUB1P53999 127 aaKnown RBP eCLIP13.41□□□□□ -0.26
SHKBP1-204ENST00000594862 MFAP2P55001 183 aa13.41□□□□□ -0.26
SHKBP1-204ENST00000594862 CD81P60033 236 aa13.41□□□□□ -0.26
SHKBP1-204ENST00000594862 RELQ04864 619 aaPredicted RBP13.41□□□□□ -0.26
SHKBP1-204ENST00000594862 ANKRD55Q3KP44 614 aa13.41□□□□□ -0.26
SHKBP1-204ENST00000594862 Q56UQ5 140 aa13.41□□□□□ -0.26
SHKBP1-204ENST00000594862 FAAP20Q6NZ36 180 aa13.41□□□□□ -0.26
SHKBP1-204ENST00000594862 SBSPONQ8IVN8 264 aa13.41□□□□□ -0.26
SHKBP1-204ENST00000594862 OR51S1Q8NGJ8 323 aa13.41□□□□□ -0.26
SHKBP1-204ENST00000594862 DEDD2Q8WXF8 326 aa13.41□□□□□ -0.26
SHKBP1-204ENST00000594862 SOSTQ9BQB4 213 aa13.41□□□□□ -0.26
SHKBP1-204ENST00000594862 TUBA4BQ9H853 241 aa13.41□□□□□ -0.26
SHKBP1-204ENST00000594862 ENY2Q9NPA8 101 aa13.41□□□□□ -0.26
SHKBP1-204ENST00000594862 DAZ1Q9NQZ3 744 aaKnown RBP13.41□□□□□ -0.26
SHKBP1-204ENST00000594862 DNAH9Q9NYC9 4486 aa13.4□□□□□ -0.26
SHKBP1-204ENST00000594862 IZUMO1RA6ND01 250 aa13.4□□□□□ -0.26
SHKBP1-204ENST00000594862 CRYM-AS1A6NIL9 109 aa13.4□□□□□ -0.26
SHKBP1-204ENST00000594862 CDS2O95674 445 aa13.4□□□□□ -0.26
SHKBP1-204ENST00000594862 OR5AC1P0C628 307 aa13.4□□□□□ -0.26
SHKBP1-204ENST00000594862 C8orf88P0DMB2 117 aa13.4□□□□□ -0.26
SHKBP1-204ENST00000594862 MFAP4P55083 255 aa13.4□□□□□ -0.26
SHKBP1-204ENST00000594862 GUCA2BQ16661 112 aa13.4□□□□□ -0.26
SHKBP1-204ENST00000594862 SP6Q3SY56 376 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms