RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 FOXA2Q9Y261 457 aaPredicted RBP4.21□□□□□ -1.74
LIG3-210ENST00000588109 LSM5Q9Y4Y9 91 aaKnown RBP4.21□□□□□ -1.74
LIG3-210ENST00000588109 TLN2Q9Y4G6 2542 aa4.2□□□□□ -1.74
LIG3-210ENST00000588109 HIVEP2P31629 2446 aa4.2□□□□□ -1.74
LIG3-210ENST00000588109 TEX50A0A1B0GTY4 177 aa4.2□□□□□ -1.74
LIG3-210ENST00000588109 FAM90A26D6RGX4 464 aa4.2□□□□□ -1.74
LIG3-210ENST00000588109 TRIM77I1YAP6 450 aa4.2□□□□□ -1.74
LIG3-210ENST00000588109 FCN1O00602 326 aa4.2□□□□□ -1.74
LIG3-210ENST00000588109 TCF21O43680 179 aa4.2□□□□□ -1.74
LIG3-210ENST00000588109 CHST1O43916 411 aa4.2□□□□□ -1.74
LIG3-210ENST00000588109 SSSCA1O60232 199 aa4.2□□□□□ -1.74
LIG3-210ENST00000588109 GPR137BO60478 399 aa4.2□□□□□ -1.74
LIG3-210ENST00000588109 HLA-DRB1P01911 266 aa4.2□□□□□ -1.74
LIG3-210ENST00000588109 RLN2P04090 185 aa4.2□□□□□ -1.74
LIG3-210ENST00000588109 CRYBA1P05813 215 aa4.2□□□□□ -1.74
LIG3-210ENST00000588109 CRYGBP07316 175 aa4.2□□□□□ -1.74
LIG3-210ENST00000588109 P0C879 139 aa4.2□□□□□ -1.74
LIG3-210ENST00000588109 PET100P0DJ07 73 aa4.2□□□□□ -1.74
LIG3-210ENST00000588109 MYOD1P15172 320 aa4.2□□□□□ -1.74
LIG3-210ENST00000588109 PVALBP20472 110 aaPredicted RBP4.2□□□□□ -1.74
LIG3-210ENST00000588109 RPL27AP46776 148 aaKnown RBP4.2□□□□□ -1.74
LIG3-210ENST00000588109 COMPP49747 757 aaPredicted RBP4.2□□□□□ -1.74
LIG3-210ENST00000588109 SPCS3P61009 180 aa4.2□□□□□ -1.74
LIG3-210ENST00000588109 RAP2BP61225 183 aa4.2□□□□□ -1.74
LIG3-210ENST00000588109 HSPE1P61604 102 aaKnown RBP4.2□□□□□ -1.74
LIG3-210ENST00000588109 TNFRSF9Q07011 255 aa4.2□□□□□ -1.74
LIG3-210ENST00000588109 FGL1Q08830 312 aa4.2□□□□□ -1.74
LIG3-210ENST00000588109 RAB32Q13637 225 aa4.2□□□□□ -1.74
LIG3-210ENST00000588109 FXYD3Q14802 87 aa4.2□□□□□ -1.74
LIG3-210ENST00000588109 CXorf66Q5JRM2 361 aaPredicted RBP4.2□□□□□ -1.74
LIG3-210ENST00000588109 C10orf55Q5SWW7 151 aa4.2□□□□□ -1.74
LIG3-210ENST00000588109 LCE5AQ5TCM9 118 aa4.2□□□□□ -1.74
LIG3-210ENST00000588109 ZNF562Q6V9R5 426 aa4.2□□□□□ -1.74
LIG3-210ENST00000588109 ZNF429Q86V71 674 aa4.2□□□□□ -1.74
LIG3-210ENST00000588109 FAM71E2Q8N5Q1 922 aa4.2□□□□□ -1.74
LIG3-210ENST00000588109 RNF152Q8N8N0 203 aa4.2□□□□□ -1.74
LIG3-210ENST00000588109 Q8N9W7 124 aa4.2□□□□□ -1.74
LIG3-210ENST00000588109 OR4D5Q8NGN0 318 aa4.2□□□□□ -1.74
LIG3-210ENST00000588109 OR1L8Q8NGR8 309 aa4.2□□□□□ -1.74
LIG3-210ENST00000588109 OR2T35Q8NGX2 323 aa4.2□□□□□ -1.74
LIG3-210ENST00000588109 OR5B3Q8NH48 314 aa4.2□□□□□ -1.74
LIG3-210ENST00000588109 OR52E5Q8NH55 327 aa4.2□□□□□ -1.74
LIG3-210ENST00000588109 GRPEL2Q8TAA5 225 aa4.2□□□□□ -1.74
LIG3-210ENST00000588109 THAP6Q8TBB0 222 aa4.2□□□□□ -1.74
LIG3-210ENST00000588109 PPP1R1CQ8WVI7 109 aa4.2□□□□□ -1.74
LIG3-210ENST00000588109 SRSF12Q8WXF0 261 aaKnown RBP4.2□□□□□ -1.74
LIG3-210ENST00000588109 ARPC1AQ92747 370 aa4.2□□□□□ -1.74
LIG3-210ENST00000588109 KRTAP9-3Q9BYQ3 159 aa4.2□□□□□ -1.74
LIG3-210ENST00000588109 MAGT1Q9H0U3 335 aa4.2□□□□□ -1.74
LIG3-210ENST00000588109 HIPK2Q9H2X6 1198 aa4.2□□□□□ -1.74
LIG3-210ENST00000588109 RBKSQ9H477 322 aa4.2□□□□□ -1.74
LIG3-210ENST00000588109 RANGRFQ9HD47 186 aaPredicted RBP4.2□□□□□ -1.74
LIG3-210ENST00000588109 HEYLQ9NQ87 328 aaPredicted RBP4.2□□□□□ -1.74
LIG3-210ENST00000588109 PARP11Q9NR21 331 aa4.2□□□□□ -1.74
LIG3-210ENST00000588109 TMEM14BQ9NUH8 114 aa4.2□□□□□ -1.74
LIG3-210ENST00000588109 HSPB7Q9UBY9 170 aa4.2□□□□□ -1.74
LIG3-210ENST00000588109 PAIP2BQ9ULR5 123 aaKnown RBP4.2□□□□□ -1.74
LIG3-210ENST00000588109 ZNF257Q9Y2Q1 563 aa4.2□□□□□ -1.74
LIG3-210ENST00000588109 CELSR1Q9NYQ6 3014 aa4.2□□□□□ -1.74
LIG3-210ENST00000588109 NAV3Q8IVL0 2385 aa4.19□□□□□ -1.74
LIG3-210ENST00000588109 IGHV7-81A0A0B4J1V7 117 aa4.19□□□□□ -1.74
LIG3-210ENST00000588109 A0A1W2PN81 502 aa4.19□□□□□ -1.74
LIG3-210ENST00000588109 MSGN1A6NI15 193 aa4.19□□□□□ -1.74
LIG3-210ENST00000588109 DIRC3C9JPN6 131 aa4.19□□□□□ -1.74
LIG3-210ENST00000588109 SMLR1H3BR10 107 aa4.19□□□□□ -1.74
LIG3-210ENST00000588109 CLDN34H7C241 214 aa4.19□□□□□ -1.74
LIG3-210ENST00000588109 K7EPK0 472 aa4.19□□□□□ -1.74
LIG3-210ENST00000588109 KCNAB3O43448 404 aa4.19□□□□□ -1.74
LIG3-210ENST00000588109 SYNGR2O43760 224 aa4.19□□□□□ -1.74
LIG3-210ENST00000588109 PITX3O75364 302 aa4.19□□□□□ -1.74
LIG3-210ENST00000588109 MBPP02686 304 aaPredicted RBP4.19□□□□□ -1.74
LIG3-210ENST00000588109 IL6RP08887 468 aaPredicted RBP4.19□□□□□ -1.74
LIG3-210ENST00000588109 APELAP0DMC3 54 aa4.19□□□□□ -1.74
LIG3-210ENST00000588109 IAPPP10997 89 aa4.19□□□□□ -1.74
LIG3-210ENST00000588109 PSMB6P28072 239 aa4.19□□□□□ -1.74
LIG3-210ENST00000588109 CHRNA7P36544 502 aa4.19□□□□□ -1.74
LIG3-210ENST00000588109 NUP62P37198 522 aaPredicted RBP4.19□□□□□ -1.74
LIG3-210ENST00000588109 SNCAP37840 140 aa4.19□□□□□ -1.74
LIG3-210ENST00000588109 HILS1P60008 231 aa4.19□□□□□ -1.74
LIG3-210ENST00000588109 POLR2GP62487 172 aaKnown RBP eCLIP4.19□□□□□ -1.74
LIG3-210ENST00000588109 RPL23AP62750 156 aaKnown RBP4.19□□□□□ -1.74
LIG3-210ENST00000588109 BLCAPP62952 87 aa4.19□□□□□ -1.74
LIG3-210ENST00000588109 CX3CL1P78423 397 aa4.19□□□□□ -1.74
LIG3-210ENST00000588109 ERHP84090 104 aaKnown RBP4.19□□□□□ -1.74
LIG3-210ENST00000588109 PRCDQ00LT1 54 aa4.19□□□□□ -1.74
LIG3-210ENST00000588109 NHLH2Q02577 135 aa4.19□□□□□ -1.74
LIG3-210ENST00000588109 SRSF4Q08170 494 aaKnown RBP4.19□□□□□ -1.74
LIG3-210ENST00000588109 ECSCRQ19T08 205 aa4.19□□□□□ -1.74
LIG3-210ENST00000588109 SLC35E3Q7Z769 313 aa4.19□□□□□ -1.74
LIG3-210ENST00000588109 DTD1Q8TEA8 209 aa4.19□□□□□ -1.74
LIG3-210ENST00000588109 DCUN1D4Q92564 292 aa4.19□□□□□ -1.74
LIG3-210ENST00000588109 CIB3Q96Q77 187 aaPredicted RBP4.19□□□□□ -1.74
LIG3-210ENST00000588109 RAB40CQ96S21 281 aa4.19□□□□□ -1.74
LIG3-210ENST00000588109 HSPB9Q9BQS6 159 aa4.19□□□□□ -1.74
LIG3-210ENST00000588109 FAM103A1Q9BTL3 118 aaKnown RBP4.19□□□□□ -1.74
LIG3-210ENST00000588109 PRSS22Q9GZN4 317 aa4.19□□□□□ -1.74
LIG3-210ENST00000588109 ESM1Q9NQ30 184 aa4.19□□□□□ -1.74
LIG3-210ENST00000588109 ZC4H2Q9NQZ6 224 aa4.19□□□□□ -1.74
LIG3-210ENST00000588109 RCL1Q9Y2P8 373 aaKnown RBP4.19□□□□□ -1.74
LIG3-210ENST00000588109 SONP18583 2426 aaKnown RBP4.19□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms