RNA–Protein interactions for RNA: ENST00000588059.5

VPS4B-202, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 5

Gene VPS4B, Length 1,252 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-202ENST00000588059 CMTM1Q8IZ96 169 aa8.12□□□□□ -1.11
VPS4B-202ENST00000588059 PUSL1Q8N0Z8 303 aaKnown RBP8.12□□□□□ -1.11
VPS4B-202ENST00000588059 TMEM167AQ8TBQ9 72 aa8.12□□□□□ -1.11
VPS4B-202ENST00000588059 C2CD4CQ8TF44 421 aa8.12□□□□□ -1.11
VPS4B-202ENST00000588059 RAB2BQ8WUD1 216 aa8.12□□□□□ -1.11
VPS4B-202ENST00000588059 AIFM2Q9BRQ8 373 aa8.12□□□□□ -1.11
VPS4B-202ENST00000588059 KRTAP4-5Q9BYR2 181 aa8.12□□□□□ -1.11
VPS4B-202ENST00000588059 FXYD6Q9H0Q3 95 aa8.12□□□□□ -1.11
VPS4B-202ENST00000588059 C11orf68Q9H3H3 251 aaKnown RBP8.12□□□□□ -1.11
VPS4B-202ENST00000588059 C5orf66Q9H5L9 145 aa8.12□□□□□ -1.11
VPS4B-202ENST00000588059 KLK9Q9UKQ9 250 aa8.12□□□□□ -1.11
VPS4B-202ENST00000588059 APLNQ9ULZ1 77 aa8.12□□□□□ -1.11
VPS4B-202ENST00000588059 MFSD2BA6NFX1 497 aa8.11□□□□□ -1.11
VPS4B-202ENST00000588059 M0QYG6 137 aa8.11□□□□□ -1.11
VPS4B-202ENST00000588059 GPR31O00270 319 aa8.11□□□□□ -1.11
VPS4B-202ENST00000588059 RBFOX2O43251 390 aaKnown RBP eCLIP8.11□□□□□ -1.11
VPS4B-202ENST00000588059 PGLYRP1O75594 196 aaPredicted RBP8.11□□□□□ -1.11
VPS4B-202ENST00000588059 HPRT1P00492 218 aa8.11□□□□□ -1.11
VPS4B-202ENST00000588059 CRYGCP07315 174 aa8.11□□□□□ -1.11
VPS4B-202ENST00000588059 IL6RP08887 468 aaPredicted RBP8.11□□□□□ -1.11
VPS4B-202ENST00000588059 ZNF735P0CB33 412 aa8.11□□□□□ -1.11
VPS4B-202ENST00000588059 AREGP15514 252 aa8.11□□□□□ -1.11
VPS4B-202ENST00000588059 NQO2P16083 231 aa8.11□□□□□ -1.11
VPS4B-202ENST00000588059 MAS1LP35410 378 aa8.11□□□□□ -1.11
VPS4B-202ENST00000588059 TMBIM6P55061 237 aa8.11□□□□□ -1.11
VPS4B-202ENST00000588059 ELLP55199 621 aaPredicted RBP8.11□□□□□ -1.11
VPS4B-202ENST00000588059 TAS2R31P59538 309 aa8.11□□□□□ -1.11
VPS4B-202ENST00000588059 RPL8P62917 257 aaKnown RBP8.11□□□□□ -1.11
VPS4B-202ENST00000588059 PHLDA2Q53GA4 152 aa8.11□□□□□ -1.11
VPS4B-202ENST00000588059 DMBX1Q8NFW5 382 aa8.11□□□□□ -1.11
VPS4B-202ENST00000588059 OR52I2Q8NH67 350 aa8.11□□□□□ -1.11
VPS4B-202ENST00000588059 CD300LFQ8TDQ1 290 aa8.11□□□□□ -1.11
VPS4B-202ENST00000588059 GALNT14Q96FL9 552 aa8.11□□□□□ -1.11
VPS4B-202ENST00000588059 SLC2A9Q9NRM0 540 aa8.11□□□□□ -1.11
VPS4B-202ENST00000588059 IGLV11-55A0A075B6I3 123 aa8.1□□□□□ -1.11
VPS4B-202ENST00000588059 TRBV7-1A0A0A6YYK4 115 aa8.1□□□□□ -1.11
VPS4B-202ENST00000588059 IGHV3-35A0A0C4DH35 117 aa8.1□□□□□ -1.11
VPS4B-202ENST00000588059 CTDSP2O14595 271 aa8.1□□□□□ -1.11
VPS4B-202ENST00000588059 CLEC3BP05452 202 aa8.1□□□□□ -1.11
VPS4B-202ENST00000588059 MYOD1P15172 320 aa8.1□□□□□ -1.11
VPS4B-202ENST00000588059 HLA-GP17693 338 aa8.1□□□□□ -1.11
VPS4B-202ENST00000588059 PSMB6P28072 239 aa8.1□□□□□ -1.11
VPS4B-202ENST00000588059 S100GP29377 79 aa8.1□□□□□ -1.11
VPS4B-202ENST00000588059 GPR183P32249 361 aa8.1□□□□□ -1.11
VPS4B-202ENST00000588059 RPL5P46777 297 aaKnown RBP8.1□□□□□ -1.11
VPS4B-202ENST00000588059 ERVK-16P61578 105 aa8.1□□□□□ -1.11
VPS4B-202ENST00000588059 LPCAT3Q6P1A2 487 aa8.1□□□□□ -1.11
VPS4B-202ENST00000588059 OR5B3Q8NH48 314 aa8.1□□□□□ -1.11
VPS4B-202ENST00000588059 OR4A5Q8NH83 315 aa8.1□□□□□ -1.11
VPS4B-202ENST00000588059 C15orf40Q8WUR7 153 aa8.1□□□□□ -1.11
VPS4B-202ENST00000588059 FCAMRQ8WWV6 532 aa8.1□□□□□ -1.11
VPS4B-202ENST00000588059 ABHD1Q96SE0 405 aa8.1□□□□□ -1.11
VPS4B-202ENST00000588059 RARRES2Q99969 163 aa8.1□□□□□ -1.11
VPS4B-202ENST00000588059 MIXL1Q9H2W2 232 aa8.1□□□□□ -1.11
VPS4B-202ENST00000588059 BET1LQ9NYM9 111 aa8.1□□□□□ -1.11
VPS4B-202ENST00000588059 KLK11Q9UBX7 282 aa8.1□□□□□ -1.11
VPS4B-202ENST00000588059 UFC1Q9Y3C8 167 aa8.1□□□□□ -1.11
VPS4B-202ENST00000588059 TRAV3A0A0B4J244 114 aa8.09□□□□□ -1.11
VPS4B-202ENST00000588059 IGLL5B9A064 214 aa8.09□□□□□ -1.11
VPS4B-202ENST00000588059 DHFRP00374 187 aa8.09□□□□□ -1.11
VPS4B-202ENST00000588059 PGAM2P15259 253 aa8.09□□□□□ -1.11
VPS4B-202ENST00000588059 HIST1H1BP16401 226 aaKnown RBP8.09□□□□□ -1.11
VPS4B-202ENST00000588059 F2RP25116 425 aa8.09□□□□□ -1.11
VPS4B-202ENST00000588059 LPAR6P43657 344 aa8.09□□□□□ -1.11
VPS4B-202ENST00000588059 MFAP2P55001 183 aa8.09□□□□□ -1.11
VPS4B-202ENST00000588059 RNASE10Q5GAN6 216 aaKnown RBP8.09□□□□□ -1.11
VPS4B-202ENST00000588059 OR11H2Q8NH07 326 aa8.09□□□□□ -1.11
VPS4B-202ENST00000588059 ZNF502Q8TBZ5 544 aa8.09□□□□□ -1.11
VPS4B-202ENST00000588059 TMEM190Q8WZ59 177 aa8.09□□□□□ -1.11
VPS4B-202ENST00000588059 DGCR14Q96DF8 476 aaKnown RBP8.09□□□□□ -1.11
VPS4B-202ENST00000588059 CXorf58Q96LI9 332 aa8.09□□□□□ -1.11
VPS4B-202ENST00000588059 BCL7BQ9BQE9 202 aa8.09□□□□□ -1.11
VPS4B-202ENST00000588059 ZNF436Q9C0F3 470 aaPredicted RBP8.09□□□□□ -1.11
VPS4B-202ENST00000588059 COMMD5Q9GZQ3 224 aa8.09□□□□□ -1.11
VPS4B-202ENST00000588059 C6orf62Q9GZU0 229 aaPredicted RBP8.09□□□□□ -1.11
VPS4B-202ENST00000588059 PLEKHA2Q9HB19 425 aa8.09□□□□□ -1.11
VPS4B-202ENST00000588059 TMEM140Q9NV12 185 aa8.09□□□□□ -1.11
VPS4B-202ENST00000588059 COMMD9Q9P000 198 aa8.09□□□□□ -1.11
VPS4B-202ENST00000588059 PKD1P98161 4303 aa8.08□□□□□ -1.12
VPS4B-202ENST00000588059 CCDC160A6NGH7 325 aa8.08□□□□□ -1.12
VPS4B-202ENST00000588059 OR4C46A6NHA9 309 aa8.08□□□□□ -1.12
VPS4B-202ENST00000588059 MPTX1A8MV57 137 aa8.08□□□□□ -1.12
VPS4B-202ENST00000588059 UPK2O00526 184 aa8.08□□□□□ -1.12
VPS4B-202ENST00000588059 DEFB4AO15263 64 aa8.08□□□□□ -1.12
VPS4B-202ENST00000588059 KRASP01116 189 aa8.08□□□□□ -1.12
VPS4B-202ENST00000588059 CD3DP04234 171 aa8.08□□□□□ -1.12
VPS4B-202ENST00000588059 REG1AP05451 166 aa8.08□□□□□ -1.12
VPS4B-202ENST00000588059 DEFA4P12838 97 aa8.08□□□□□ -1.12
VPS4B-202ENST00000588059 IL18Q14116 193 aa8.08□□□□□ -1.12
VPS4B-202ENST00000588059 ZNF124Q15973 351 aa8.08□□□□□ -1.12
VPS4B-202ENST00000588059 TBC1D26Q86UD7 250 aa8.08□□□□□ -1.12
VPS4B-202ENST00000588059 APRG1Q8IVJ8 170 aa8.08□□□□□ -1.12
VPS4B-202ENST00000588059 DYNC2LI1Q8TCX1 351 aa8.08□□□□□ -1.12
VPS4B-202ENST00000588059 DIRAS2Q96HU8 199 aa8.08□□□□□ -1.12
VPS4B-202ENST00000588059 CSTL1Q9H114 145 aa8.08□□□□□ -1.12
VPS4B-202ENST00000588059 DAZ1Q9NQZ3 744 aaKnown RBP8.08□□□□□ -1.12
VPS4B-202ENST00000588059 CCDC59Q9P031 241 aaKnown RBP8.08□□□□□ -1.12
VPS4B-202ENST00000588059 MTFP1Q9UDX5 166 aa8.08□□□□□ -1.12
VPS4B-202ENST00000588059 PRSS29PA6NIE9 313 aa8.07□□□□□ -1.12
VPS4B-202ENST00000588059 CGB1A6NKQ9 187 aa8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms