RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-223	ENST00000583595	TCN2	P20062	427 aa		3.59	□□□□□ -1.83
SS18-223	ENST00000583595	AZU1	P20160	251 aa		3.59	□□□□□ -1.83
SS18-223	ENST00000583595	S100G	P29377	79 aa		3.59	□□□□□ -1.83
SS18-223	ENST00000583595	RPL12	P30050	165 aa	Known RBP	3.59	□□□□□ -1.83
SS18-223	ENST00000583595	CTRL	P40313	264 aa		3.59	□□□□□ -1.83
SS18-223	ENST00000583595	DNASE1L1	P49184	302 aa		3.59	□□□□□ -1.83
SS18-223	ENST00000583595	TBPL1	P62380	186 aa		3.59	□□□□□ -1.83
SS18-223	ENST00000583595	PPP1R1A	Q13522	171 aa		3.59	□□□□□ -1.83
SS18-223	ENST00000583595	ARFRP1	Q13795	201 aa		3.59	□□□□□ -1.83
SS18-223	ENST00000583595	CCSMST1	Q4G0I0	132 aa		3.59	□□□□□ -1.83
SS18-223	ENST00000583595	SPATA45	Q537H7	98 aa		3.59	□□□□□ -1.83
SS18-223	ENST00000583595	KRTAP5-4	Q6L8H1	288 aa		3.59	□□□□□ -1.83
SS18-223	ENST00000583595	SBSN	Q6UWP8	590 aa		3.59	□□□□□ -1.83
SS18-223	ENST00000583595	ZNF497	Q6ZNH5	498 aa		3.59	□□□□□ -1.83
SS18-223	ENST00000583595	CALHM1	Q8IU99	346 aa		3.59	□□□□□ -1.83
SS18-223	ENST00000583595	C1orf174	Q8IYL3	243 aa		3.59	□□□□□ -1.83
SS18-223	ENST00000583595	APCDD1L	Q8NCL9	501 aa		3.59	□□□□□ -1.83
SS18-223	ENST00000583595	MORN4	Q8NDC4	146 aa		3.59	□□□□□ -1.83
SS18-223	ENST00000583595	KLHL30-AS1	Q8NEE0	82 aa		3.59	□□□□□ -1.83
SS18-223	ENST00000583595	GPR32P1	Q8NGA4	272 aa		3.59	□□□□□ -1.83
SS18-223	ENST00000583595	OR52L1	Q8NGH7	329 aa		3.59	□□□□□ -1.83
SS18-223	ENST00000583595	OR5A2	Q8NGI9	324 aa		3.59	□□□□□ -1.83
SS18-223	ENST00000583595	OR1N2	Q8NGR9	330 aa		3.59	□□□□□ -1.83
SS18-223	ENST00000583595	OR2Y1	Q8NGV0	311 aa		3.59	□□□□□ -1.83
SS18-223	ENST00000583595	OR2G3	Q8NGZ4	309 aa		3.59	□□□□□ -1.83
SS18-223	ENST00000583595	OR5AK3P	Q8NH89	298 aa		3.59	□□□□□ -1.83
SS18-223	ENST00000583595	LRRC29	Q8WV35	223 aa		3.59	□□□□□ -1.83
SS18-223	ENST00000583595	AQP3	Q92482	292 aa		3.59	□□□□□ -1.83
SS18-223	ENST00000583595	PSMF1	Q92530	271 aa		3.59	□□□□□ -1.83
SS18-223	ENST00000583595	RBMXL1	Q96E39	390 aa	Known RBP	3.59	□□□□□ -1.83
SS18-223	ENST00000583595	NICN1	Q9BSH3	213 aa		3.59	□□□□□ -1.83
SS18-223	ENST00000583595	PLA2G12A	Q9BZM1	189 aa		3.59	□□□□□ -1.83
SS18-223	ENST00000583595	SH2D2A	Q9NP31	389 aa		3.59	□□□□□ -1.83
SS18-223	ENST00000583595	CCL28	Q9NRJ3	127 aa		3.59	□□□□□ -1.83
SS18-223	ENST00000583595	CMC2	Q9NRP2	79 aa		3.59	□□□□□ -1.83
SS18-223	ENST00000583595	CES1P1	Q9UKY3	287 aa		3.59	□□□□□ -1.83
SS18-223	ENST00000583595	F11R	Q9Y624	299 aa	Known RBP	3.59	□□□□□ -1.83
SS18-223	ENST00000583595	TRIP11	Q15643	1979 aa		3.59	□□□□□ -1.83
SS18-223	ENST00000583595	MYLK	Q15746	1914 aa		3.58	□□□□□ -1.84
SS18-223	ENST00000583595	KIF26B	Q2KJY2	2108 aa		3.58	□□□□□ -1.84
SS18-223	ENST00000583595		A0A0B4J2E0	115 aa		3.58	□□□□□ -1.84
SS18-223	ENST00000583595	ARL5C	A6NH57	179 aa		3.58	□□□□□ -1.84
SS18-223	ENST00000583595	ZNF736	B4DX44	427 aa	Predicted RBP	3.58	□□□□□ -1.84
SS18-223	ENST00000583595	CCL22	O00626	93 aa		3.58	□□□□□ -1.84
SS18-223	ENST00000583595	HCRT	O43612	131 aa		3.58	□□□□□ -1.84
SS18-223	ENST00000583595	HYPM	O75409	117 aa		3.58	□□□□□ -1.84
SS18-223	ENST00000583595	SERF1A	O75920	110 aa		3.58	□□□□□ -1.84
SS18-223	ENST00000583595	SFT2D2	O95562	160 aa		3.58	□□□□□ -1.84
SS18-223	ENST00000583595	CYB5A	P00167	134 aa		3.58	□□□□□ -1.84
SS18-223	ENST00000583595	HPN	P05981	417 aa		3.58	□□□□□ -1.84
SS18-223	ENST00000583595	PTHLH	P12272	177 aa		3.58	□□□□□ -1.84
SS18-223	ENST00000583595	CD99	P14209	185 aa		3.58	□□□□□ -1.84
SS18-223	ENST00000583595	CMPK1	P30085	196 aa		3.58	□□□□□ -1.84
SS18-223	ENST00000583595	TSPO	P30536	169 aa		3.58	□□□□□ -1.84
SS18-223	ENST00000583595	PYCR1	P32322	319 aa		3.58	□□□□□ -1.84
SS18-223	ENST00000583595	SRP14	P37108	136 aa	Known RBP	3.58	□□□□□ -1.84
SS18-223	ENST00000583595	RBMX	P38159	391 aa	Known RBP	3.58	□□□□□ -1.84
SS18-223	ENST00000583595	HINT1	P49773	126 aa	Predicted RBP	3.58	□□□□□ -1.84
SS18-223	ENST00000583595	RPS11	P62280	158 aa	Known RBP eCLIP	3.58	□□□□□ -1.84
SS18-223	ENST00000583595	FKBP1A	P62942	108 aa	Known RBP	3.58	□□□□□ -1.84
SS18-223	ENST00000583595	ARG2	P78540	354 aa		3.58	□□□□□ -1.84
SS18-223	ENST00000583595	RPL18A	Q02543	176 aa	Known RBP	3.58	□□□□□ -1.84
SS18-223	ENST00000583595	LAMTOR4	Q0VGL1	99 aa		3.58	□□□□□ -1.84
SS18-223	ENST00000583595	HIST3H3	Q16695	136 aa		3.58	□□□□□ -1.84
SS18-223	ENST00000583595	C14orf177	Q52M58	125 aa		3.58	□□□□□ -1.84
SS18-223	ENST00000583595	DPPA3	Q6W0C5	159 aa		3.58	□□□□□ -1.84
SS18-223	ENST00000583595	GTF2H5	Q6ZYL4	71 aa		3.58	□□□□□ -1.84
SS18-223	ENST00000583595	UBALD2	Q8IYN6	164 aa		3.58	□□□□□ -1.84
SS18-223	ENST00000583595	MUC15	Q8N387	334 aa		3.58	□□□□□ -1.84
SS18-223	ENST00000583595	ZNF433	Q8N7K0	673 aa	Predicted RBP	3.58	□□□□□ -1.84
SS18-223	ENST00000583595	POM121L12	Q8N7R1	296 aa		3.58	□□□□□ -1.84
SS18-223	ENST00000583595	ZNF709	Q8N972	641 aa		3.58	□□□□□ -1.84
SS18-223	ENST00000583595	ST6GALNAC3	Q8NDV1	305 aa		3.58	□□□□□ -1.84
SS18-223	ENST00000583595	OR52R1	Q8NGF1	315 aa		3.58	□□□□□ -1.84
SS18-223	ENST00000583595	OR8S1	Q8NH09	359 aa		3.58	□□□□□ -1.84
SS18-223	ENST00000583595	CMTM2	Q8TAZ6	248 aa		3.58	□□□□□ -1.84
SS18-223	ENST00000583595	RPS4Y2	Q8TD47	263 aa		3.58	□□□□□ -1.84
SS18-223	ENST00000583595	C2orf15	Q8WU43	125 aa	Known RBP	3.58	□□□□□ -1.84
SS18-223	ENST00000583595	C7orf33	Q8WU49	177 aa		3.58	□□□□□ -1.84
SS18-223	ENST00000583595	DDIT4L	Q96D03	193 aa		3.58	□□□□□ -1.84
SS18-223	ENST00000583595	SIGLEC12	Q96PQ1	595 aa		3.58	□□□□□ -1.84
SS18-223	ENST00000583595	TSPAN32	Q96QS1	320 aa		3.58	□□□□□ -1.84
SS18-223	ENST00000583595	CST11	Q9H112	138 aa		3.58	□□□□□ -1.84
SS18-223	ENST00000583595	SLC25A22	Q9H936	323 aa		3.58	□□□□□ -1.84
SS18-223	ENST00000583595	KLK13	Q9UKR3	277 aa		3.58	□□□□□ -1.84
SS18-223	ENST00000583595	ARL5A	Q9Y689	179 aa		3.58	□□□□□ -1.84
SS18-223	ENST00000583595	WSB1	Q9Y6I7	421 aa		3.58	□□□□□ -1.84
SS18-223	ENST00000583595	ZNF236	Q9UL36	1845 aa		3.58	□□□□□ -1.84
SS18-223	ENST00000583595	RALGAPA2	Q2PPJ7	1873 aa		3.58	□□□□□ -1.84
SS18-223	ENST00000583595	LOC102724200	A0A096LPH7	203 aa	Predicted RBP	3.57	□□□□□ -1.84
SS18-223	ENST00000583595	CCL15-CCL14	A0A0B4J2E2	113 aa		3.57	□□□□□ -1.84
SS18-223	ENST00000583595	TAX1BP3	O14907	124 aa		3.57	□□□□□ -1.84
SS18-223	ENST00000583595	PIN1P1	O15428	100 aa		3.57	□□□□□ -1.84
SS18-223	ENST00000583595	CD5L	O43866	347 aa		3.57	□□□□□ -1.84
SS18-223	ENST00000583595	KLF8	O95600	359 aa	Predicted RBP	3.57	□□□□□ -1.84
SS18-223	ENST00000583595	HAND1	O96004	215 aa		3.57	□□□□□ -1.84
SS18-223	ENST00000583595	HRAS	P01112	189 aa		3.57	□□□□□ -1.84
SS18-223	ENST00000583595	IGLC1	P0CG04	106 aa		3.57	□□□□□ -1.84
SS18-223	ENST00000583595	COL11A1	P12107	1806 aa	Predicted RBP	3.57	□□□□□ -1.84
SS18-223	ENST00000583595	ZNF708	P17019	499 aa		3.57	□□□□□ -1.84

Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms