RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 IFNA17P01571 189 aa14.93□□□□□ -0.02
SS18-209ENST00000578595 IGKV1-5P01602 117 aa14.93□□□□□ -0.02
SS18-209ENST00000578595 HLA-AP01891 365 aaKnown RBP14.93□□□□□ -0.02
SS18-209ENST00000578595 KLF9Q13886 244 aaPredicted RBP14.93□□□□□ -0.02
SS18-209ENST00000578595 TMED4Q7Z7H5 227 aa14.93□□□□□ -0.02
SS18-209ENST00000578595 CADM3Q8N126 398 aa14.93□□□□□ -0.02
SS18-209ENST00000578595 CCDC140Q96MF4 163 aa14.93□□□□□ -0.02
SS18-209ENST00000578595 TMEM222Q9H0R3 208 aa14.93□□□□□ -0.02
SS18-209ENST00000578595 IGHV3-21A0A0B4J1V1 117 aa14.92□□□□□ -0.02
SS18-209ENST00000578595 CRYM-AS1A6NIL9 109 aa14.92□□□□□ -0.02
SS18-209ENST00000578595 GGCTO75223 188 aaKnown RBP14.92□□□□□ -0.02
SS18-209ENST00000578595 GPR183P32249 361 aa14.92□□□□□ -0.02
SS18-209ENST00000578595 DHODHQ02127 395 aa14.92□□□□□ -0.02
SS18-209ENST00000578595 KLF5Q13887 457 aaPredicted RBP14.92□□□□□ -0.02
SS18-209ENST00000578595 SRRQ9GZT4 340 aa14.92□□□□□ -0.02
SS18-209ENST00000578595 PEMTQ9UBM1 199 aa14.92□□□□□ -0.02
SS18-209ENST00000578595 KCNIP3Q9Y2W7 256 aa14.92□□□□□ -0.02
SS18-209ENST00000578595 F11RQ9Y624 299 aaKnown RBP14.92□□□□□ -0.02
SS18-209ENST00000578595 DNAH3Q8TD57 4116 aa14.91□□□□□ -0.02
SS18-209ENST00000578595 TRBV7-1A0A0A6YYK4 115 aa14.91□□□□□ -0.02
SS18-209ENST00000578595 ETV6P41212 452 aa14.91□□□□□ -0.02
SS18-209ENST00000578595 HOXA1P49639 335 aaPredicted RBP14.91□□□□□ -0.02
SS18-209ENST00000578595 HSPE1P61604 102 aaKnown RBP14.91□□□□□ -0.02
SS18-209ENST00000578595 PRCDQ00LT1 54 aa14.91□□□□□ -0.02
SS18-209ENST00000578595 TMEM268Q5VZI3 342 aa14.91□□□□□ -0.02
SS18-209ENST00000578595 RBPMSQ93062 196 aaKnown RBP14.91□□□□□ -0.02
SS18-209ENST00000578595 MISP3Q96FF7 219 aa14.91□□□□□ -0.02
SS18-209ENST00000578595 ENY2Q9NPA8 101 aa14.91□□□□□ -0.02
SS18-209ENST00000578595 LINC00854A0A1B0GVQ3 168 aa14.9□□□□□ -0.02
SS18-209ENST00000578595 ST8SIA3O43173 380 aa14.9□□□□□ -0.02
SS18-209ENST00000578595 OR2C1O95371 312 aa14.9□□□□□ -0.02
SS18-209ENST00000578595 SPNP16150 400 aa14.9□□□□□ -0.02
SS18-209ENST00000578595 ERHP84090 104 aaKnown RBP14.9□□□□□ -0.02
SS18-209ENST00000578595 DCTN2Q13561 401 aaKnown RBP14.9□□□□□ -0.02
SS18-209ENST00000578595 UBAC2Q8NBM4 344 aa14.9□□□□□ -0.02
SS18-209ENST00000578595 PRR13Q9NZ81 148 aa14.9□□□□□ -0.02
SS18-209ENST00000578595 DMRT1Q9Y5R6 373 aa14.9□□□□□ -0.02
SS18-209ENST00000578595 ZNF320A2RRD8 509 aa14.89□□□□□ -0.03
SS18-209ENST00000578595 ANXA3P12429 323 aa14.89□□□□□ -0.03
SS18-209ENST00000578595 OR1L6Q8NGR2 347 aa14.89□□□□□ -0.03
SS18-209ENST00000578595 LHFPL5Q8TAF8 219 aa14.89□□□□□ -0.03
SS18-209ENST00000578595 DYNLRB2Q8TF09 96 aa14.89□□□□□ -0.03
SS18-209ENST00000578595 GLYATL2Q8WU03 294 aa14.89□□□□□ -0.03
SS18-209ENST00000578595 TMEM230Q96A57 120 aa14.89□□□□□ -0.03
SS18-209ENST00000578595 A0A0G2JRQ6 117 aa14.88□□□□□ -0.03
SS18-209ENST00000578595 CDS2O95674 445 aa14.88□□□□□ -0.03
SS18-209ENST00000578595 CLEC3BP05452 202 aa14.88□□□□□ -0.03
SS18-209ENST00000578595 SNCAP37840 140 aa14.88□□□□□ -0.03
SS18-209ENST00000578595 Q56UQ5 140 aa14.88□□□□□ -0.03
SS18-209ENST00000578595 PLET1Q6UQ28 207 aa14.88□□□□□ -0.03
SS18-209ENST00000578595 SELENOHQ8IZQ5 122 aaKnown RBP14.88□□□□□ -0.03
SS18-209ENST00000578595 VN1R17PQ8TDU5 208 aa14.88□□□□□ -0.03
SS18-209ENST00000578595 PINX1Q96BK5 328 aaKnown RBP14.88□□□□□ -0.03
SS18-209ENST00000578595 A0A0B4J293 547 aa14.87□□□□□ -0.03
SS18-209ENST00000578595 IGHV3-35A0A0C4DH35 117 aa14.87□□□□□ -0.03
SS18-209ENST00000578595 OR2T8A6NH00 312 aa14.87□□□□□ -0.03
SS18-209ENST00000578595 GP9P14770 177 aa14.87□□□□□ -0.03
SS18-209ENST00000578595 VAMP1P23763 118 aa14.87□□□□□ -0.03
SS18-209ENST00000578595 MFAP2P55001 183 aa14.87□□□□□ -0.03
SS18-209ENST00000578595 CD69Q07108 199 aa14.87□□□□□ -0.03
SS18-209ENST00000578595 FAM106AQ4KMX7 169 aa14.87□□□□□ -0.03
SS18-209ENST00000578595 FAM219AQ8IW50 185 aa14.87□□□□□ -0.03
SS18-209ENST00000578595 OR2C3Q8N628 320 aa14.87□□□□□ -0.03
SS18-209ENST00000578595 OR1P1Q8NH06 330 aa14.87□□□□□ -0.03
SS18-209ENST00000578595 ZNF502Q8TBZ5 544 aa14.87□□□□□ -0.03
SS18-209ENST00000578595 C21orf62Q9NYP8 219 aa14.87□□□□□ -0.03
SS18-209ENST00000578595 CACNG5Q9UF02 275 aa14.87□□□□□ -0.03
SS18-209ENST00000578595 NXPH3O95157 252 aa14.86□□□□□ -0.03
SS18-209ENST00000578595 P0C879 139 aa14.86□□□□□ -0.03
SS18-209ENST00000578595 BAK1Q16611 211 aa14.86□□□□□ -0.03
SS18-209ENST00000578595 DEDD2Q8WXF8 326 aa14.86□□□□□ -0.03
SS18-209ENST00000578595 CTNNBIP1Q9NSA3 81 aaPredicted RBP14.86□□□□□ -0.03
SS18-209ENST00000578595 IGLV1-51P01701 117 aa14.85□□□□□ -0.03
SS18-209ENST00000578595 CSN3P07498 182 aa14.85□□□□□ -0.03
SS18-209ENST00000578595 TMEM187Q14656 261 aa14.85□□□□□ -0.03
SS18-209ENST00000578595 KLK9Q2XQG4 91 aa14.85□□□□□ -0.03
SS18-209ENST00000578595 SCARB1Q8WTV0 552 aa14.85□□□□□ -0.03
SS18-209ENST00000578595 GPR146Q96CH1 333 aa14.85□□□□□ -0.03
SS18-209ENST00000578595 GALNT14Q96FL9 552 aa14.85□□□□□ -0.03
SS18-209ENST00000578595 SLC25A21Q9BQT8 299 aaPredicted RBP14.85□□□□□ -0.03
SS18-209ENST00000578595 KLK9Q9UKQ9 250 aa14.85□□□□□ -0.03
SS18-209ENST00000578595 CENPXA8MT69 81 aa14.84□□□□□ -0.03
SS18-209ENST00000578595 CEBPZOSA8MTT3 80 aa14.84□□□□□ -0.03
SS18-209ENST00000578595 TGOLN2O43493 480 aa14.84□□□□□ -0.03
SS18-209ENST00000578595 CCR6P51684 374 aa14.84□□□□□ -0.03
SS18-209ENST00000578595 SUB1P53999 127 aaKnown RBP eCLIP14.84□□□□□ -0.03
SS18-209ENST00000578595 SRPXP78539 464 aa14.84□□□□□ -0.03
SS18-209ENST00000578595 RBMS2Q15434 407 aaKnown RBP14.84□□□□□ -0.03
SS18-209ENST00000578595 LCN12Q6JVE5 192 aa14.84□□□□□ -0.03
SS18-209ENST00000578595 LGI3Q8N145 548 aa14.84□□□□□ -0.03
SS18-209ENST00000578595 CENPSQ8N2Z9 138 aa14.84□□□□□ -0.03
SS18-209ENST00000578595 TMEM56-RWDD3S4R434 201 aa14.84□□□□□ -0.03
SS18-209ENST00000578595 NAP1L6A6NFF2 107 aa14.83□□□□□ -0.04
SS18-209ENST00000578595 K7EIM0 57 aa14.83□□□□□ -0.04
SS18-209ENST00000578595 IGHV3-48P01763 117 aa14.83□□□□□ -0.04
SS18-209ENST00000578595 SULT1A3P0DMM9 295 aa14.83□□□□□ -0.04
SS18-209ENST00000578595 SULT1A4P0DMN0 295 aa14.83□□□□□ -0.04
SS18-209ENST00000578595 SUPT4H1P63272 117 aaKnown RBP14.83□□□□□ -0.04
SS18-209ENST00000578595 TMEM128Q5BJH2 165 aa14.83□□□□□ -0.04
SS18-209ENST00000578595 IL34Q6ZMJ4 242 aa14.83□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms