RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 AIPO00170 330 aa5.47□□□□□ -1.53
VPS53-217ENST00000575100 BUB3O43684 328 aa5.47□□□□□ -1.53
VPS53-217ENST00000575100 LY6G6DO95868 133 aa5.47□□□□□ -1.53
VPS53-217ENST00000575100 FRMD6-AS1P0C7T7 363 aa5.47□□□□□ -1.53
VPS53-217ENST00000575100 PPP3R1P63098 170 aa5.47□□□□□ -1.53
VPS53-217ENST00000575100 KISS1Q15726 138 aa5.47□□□□□ -1.53
VPS53-217ENST00000575100 OR10K2Q6IF99 312 aa5.47□□□□□ -1.53
VPS53-217ENST00000575100 FAM19A5Q7Z5A7 132 aaPredicted RBP5.47□□□□□ -1.53
VPS53-217ENST00000575100 CASTOR1Q8WTX7 329 aa5.47□□□□□ -1.53
VPS53-217ENST00000575100 EEF1AKMT3Q96AZ1 226 aa5.47□□□□□ -1.53
VPS53-217ENST00000575100 OR10C1Q96KK4 312 aa5.47□□□□□ -1.53
VPS53-217ENST00000575100 C1orf147Q96MC9 270 aaPredicted RBP5.47□□□□□ -1.53
VPS53-217ENST00000575100 HSPB11Q9Y547 144 aa5.47□□□□□ -1.53
VPS53-217ENST00000575100 HEATR1Q9H583 2144 aaKnown RBP5.47□□□□□ -1.53
VPS53-217ENST00000575100 MAP1AP78559 2803 aaPredicted RBP5.46□□□□□ -1.53
VPS53-217ENST00000575100 CHD3Q12873 2000 aaKnown RBP5.46□□□□□ -1.53
VPS53-217ENST00000575100 IGLV3-9A0A075B6K5 115 aa5.46□□□□□ -1.54
VPS53-217ENST00000575100 IGKV1-12A0A0C4DH73 117 aa5.46□□□□□ -1.54
VPS53-217ENST00000575100 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.46□□□□□ -1.54
VPS53-217ENST00000575100 DNASE2O00115 360 aaPredicted RBP5.46□□□□□ -1.54
VPS53-217ENST00000575100 SLC17A2O00624 439 aa5.46□□□□□ -1.54
VPS53-217ENST00000575100 ANGPTL7O43827 346 aa5.46□□□□□ -1.54
VPS53-217ENST00000575100 IGKV1D-12P01611 117 aa5.46□□□□□ -1.54
VPS53-217ENST00000575100 OR8U8P0C7N1 319 aa5.46□□□□□ -1.54
VPS53-217ENST00000575100 GPR183P32249 361 aa5.46□□□□□ -1.54
VPS53-217ENST00000575100 ZNF93P35789 620 aaPredicted RBP5.46□□□□□ -1.54
VPS53-217ENST00000575100 GPM6AP51674 278 aa5.46□□□□□ -1.54
VPS53-217ENST00000575100 FOXI1Q12951 378 aa5.46□□□□□ -1.54
VPS53-217ENST00000575100 C4orf26Q17RF5 130 aa5.46□□□□□ -1.54
VPS53-217ENST00000575100 BAIAP2L2Q6UXY1 529 aa5.46□□□□□ -1.54
VPS53-217ENST00000575100 ZCCHC24Q8N2G6 241 aaKnown RBP5.46□□□□□ -1.54
VPS53-217ENST00000575100 NUP37Q8NFH4 326 aa5.46□□□□□ -1.54
VPS53-217ENST00000575100 OR56B4Q8NH76 319 aa5.46□□□□□ -1.54
VPS53-217ENST00000575100 ACOT12Q8WYK0 555 aa5.46□□□□□ -1.54
VPS53-217ENST00000575100 SLC25A38Q96DW6 304 aa5.46□□□□□ -1.54
VPS53-217ENST00000575100 PIK3IP1Q96FE7 263 aa5.46□□□□□ -1.54
VPS53-217ENST00000575100 SEC22AQ96IW7 307 aa5.46□□□□□ -1.54
VPS53-217ENST00000575100 WWC2-AS2Q96NR7 200 aa5.46□□□□□ -1.54
VPS53-217ENST00000575100 METTL17Q9H7H0 456 aaPredicted RBP5.46□□□□□ -1.54
VPS53-217ENST00000575100 OR5V1Q9UGF6 321 aa5.46□□□□□ -1.54
VPS53-217ENST00000575100 UFC1Q9Y3C8 167 aa5.46□□□□□ -1.54
VPS53-217ENST00000575100 OR51B2Q9Y5P1 312 aa5.46□□□□□ -1.54
VPS53-217ENST00000575100 DSCAMO60469 2012 aa5.46□□□□□ -1.54
VPS53-217ENST00000575100 ARID1AO14497 2285 aa5.46□□□□□ -1.54
VPS53-217ENST00000575100 F5H5P2 479 aa5.46□□□□□ -1.54
VPS53-217ENST00000575100 PDCD5O14737 125 aa5.46□□□□□ -1.54
VPS53-217ENST00000575100 IFNA17P01571 189 aa5.46□□□□□ -1.54
VPS53-217ENST00000575100 IGHV3-13P01766 116 aa5.46□□□□□ -1.54
VPS53-217ENST00000575100 EIF4EP06730 217 aaKnown RBP5.46□□□□□ -1.54
VPS53-217ENST00000575100 OR4A8P0C604 315 aa5.46□□□□□ -1.54
VPS53-217ENST00000575100 HIST1H1BP16401 226 aaKnown RBP5.46□□□□□ -1.54
VPS53-217ENST00000575100 ELK1P19419 428 aa5.46□□□□□ -1.54
VPS53-217ENST00000575100 OMGP23515 440 aa5.46□□□□□ -1.54
VPS53-217ENST00000575100 CEACAM21Q3KPI0 293 aa5.46□□□□□ -1.54
VPS53-217ENST00000575100 ZNF718Q3SXZ3 478 aa5.46□□□□□ -1.54
VPS53-217ENST00000575100 C1orf100Q5SVJ3 147 aa5.46□□□□□ -1.54
VPS53-217ENST00000575100 LRRC28Q86X40 367 aaPredicted RBP5.46□□□□□ -1.54
VPS53-217ENST00000575100 NIT1Q86X76 327 aa5.46□□□□□ -1.54
VPS53-217ENST00000575100 SMIM20Q8N5G0 67 aa5.46□□□□□ -1.54
VPS53-217ENST00000575100 SAMD12Q8N8I0 201 aa5.46□□□□□ -1.54
VPS53-217ENST00000575100 GDPD1Q8N9F7 314 aa5.46□□□□□ -1.54
VPS53-217ENST00000575100 OR8G5Q8NG78 346 aa5.46□□□□□ -1.54
VPS53-217ENST00000575100 OR2Z1Q8NG97 314 aa5.46□□□□□ -1.54
VPS53-217ENST00000575100 OR4S2Q8NH73 311 aa5.46□□□□□ -1.54
VPS53-217ENST00000575100 OR5P3Q8WZ94 311 aa5.46□□□□□ -1.54
VPS53-217ENST00000575100 TMEM204Q9BSN7 226 aa5.46□□□□□ -1.54
VPS53-217ENST00000575100 CCDC32Q9BV29 185 aa5.46□□□□□ -1.54
VPS53-217ENST00000575100 KRTAP9-2Q9BYQ4 174 aa5.46□□□□□ -1.54
VPS53-217ENST00000575100 MAP1LC3AQ9H492 121 aa5.46□□□□□ -1.54
VPS53-217ENST00000575100 RASL12Q9NYN1 266 aa5.46□□□□□ -1.54
VPS53-217ENST00000575100 SCP2D1Q9UJQ7 156 aa5.46□□□□□ -1.54
VPS53-217ENST00000575100 VPREB3Q9UKI3 123 aa5.46□□□□□ -1.54
VPS53-217ENST00000575100 FBXO7Q9Y3I1 522 aa5.46□□□□□ -1.54
VPS53-217ENST00000575100 TMEM272A0A1B0GTI8 110 aa5.45□□□□□ -1.54
VPS53-217ENST00000575100 BCL3P20749 454 aa5.45□□□□□ -1.54
VPS53-217ENST00000575100 CKS1BP61024 79 aa5.45□□□□□ -1.54
VPS53-217ENST00000575100 QRFPP83859 136 aa5.45□□□□□ -1.54
VPS53-217ENST00000575100 RPL18AQ02543 176 aaKnown RBP5.45□□□□□ -1.54
VPS53-217ENST00000575100 GLT8D1Q68CQ7 371 aa5.45□□□□□ -1.54
VPS53-217ENST00000575100 HAGHLQ6PII5 290 aaPredicted RBP5.45□□□□□ -1.54
VPS53-217ENST00000575100 SLC36A1Q7Z2H8 476 aa5.45□□□□□ -1.54
VPS53-217ENST00000575100 SNX29P2Q8IUI4 249 aa5.45□□□□□ -1.54
VPS53-217ENST00000575100 TNFAIP8L1Q8WVP5 186 aa5.45□□□□□ -1.54
VPS53-217ENST00000575100 PCNPQ8WW12 178 aaKnown RBP5.45□□□□□ -1.54
VPS53-217ENST00000575100 FAM3DQ96BQ1 224 aa5.45□□□□□ -1.54
VPS53-217ENST00000575100 BORCS8Q96FH0 119 aa5.45□□□□□ -1.54
VPS53-217ENST00000575100 GPER1Q99527 375 aa5.45□□□□□ -1.54
VPS53-217ENST00000575100 ADAT1Q9BUB4 502 aaKnown RBP5.45□□□□□ -1.54
VPS53-217ENST00000575100 OR51J1Q9H342 316 aa5.45□□□□□ -1.54
VPS53-217ENST00000575100 ZNF442Q9H7R0 627 aa5.45□□□□□ -1.54
VPS53-217ENST00000575100 ZNF581Q9P0T4 197 aa5.45□□□□□ -1.54
VPS53-217ENST00000575100 METTL1Q9UBP6 276 aaKnown RBP5.45□□□□□ -1.54
VPS53-217ENST00000575100 KLK11Q9UBX7 282 aa5.45□□□□□ -1.54
VPS53-217ENST00000575100 V9GYH0 126 aa5.45□□□□□ -1.54
VPS53-217ENST00000575100 CSPG4Q6UVK1 2322 aa5.45□□□□□ -1.54
VPS53-217ENST00000575100 LOC100131303A0A0U1RQF7 123 aa5.44□□□□□ -1.54
VPS53-217ENST00000575100 M0R143 59 aa5.44□□□□□ -1.54
VPS53-217ENST00000575100 GPR31O00270 319 aa5.44□□□□□ -1.54
VPS53-217ENST00000575100 PDE6DO43924 150 aa5.44□□□□□ -1.54
VPS53-217ENST00000575100 S1PR2O95136 353 aa5.44□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms