RNA–Protein interactions for RNA: ENST00000574087.1

NUP88-208, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-208ENST00000574087 SVBPQ8N300 66 aa2.72□□□□□ -1.97
NUP88-208ENST00000574087 FER1L6-AS1Q8NA97 138 aa2.72□□□□□ -1.97
NUP88-208ENST00000574087 TMEM229BQ8NBD8 167 aa2.72□□□□□ -1.97
NUP88-208ENST00000574087 OR10G2Q8NGC3 310 aa2.72□□□□□ -1.97
NUP88-208ENST00000574087 OR2G2Q8NGZ5 317 aa2.72□□□□□ -1.97
NUP88-208ENST00000574087 OR2T4Q8NH00 348 aa2.72□□□□□ -1.97
NUP88-208ENST00000574087 OR2T29Q8NH02 315 aa2.72□□□□□ -1.97
NUP88-208ENST00000574087 MFSD8Q8NHS3 518 aa2.72□□□□□ -1.97
NUP88-208ENST00000574087 MBD3L1Q8WWY6 194 aa2.72□□□□□ -1.97
NUP88-208ENST00000574087 RXFP2Q8WXD0 754 aa2.72□□□□□ -1.97
NUP88-208ENST00000574087 PP6455Q8WZ26 134 aa2.72□□□□□ -1.97
NUP88-208ENST00000574087 TMEM54Q969K7 222 aa2.72□□□□□ -1.97
NUP88-208ENST00000574087 TMEM106AQ96A25 262 aa2.72□□□□□ -1.97
NUP88-208ENST00000574087 EEF1AKMT3Q96AZ1 226 aa2.72□□□□□ -1.97
NUP88-208ENST00000574087 FMC1Q96HJ9 113 aa2.72□□□□□ -1.97
NUP88-208ENST00000574087 DERL3Q96Q80 235 aa2.72□□□□□ -1.97
NUP88-208ENST00000574087 EMC6Q9BV81 110 aa2.72□□□□□ -1.97
NUP88-208ENST00000574087 SAMD10Q9BYL1 202 aa2.72□□□□□ -1.97
NUP88-208ENST00000574087 OR2H1Q9GZK4 316 aa2.72□□□□□ -1.97
NUP88-208ENST00000574087 MED28Q9H204 178 aa2.72□□□□□ -1.97
NUP88-208ENST00000574087 OR2D2Q9H210 308 aa2.72□□□□□ -1.97
NUP88-208ENST00000574087 POMKQ9H5K3 350 aa2.72□□□□□ -1.97
NUP88-208ENST00000574087 HES4Q9HCC6 221 aa2.72□□□□□ -1.97
NUP88-208ENST00000574087 ANXA10Q9UJ72 324 aa2.72□□□□□ -1.97
NUP88-208ENST00000574087 ORC6Q9Y5N6 252 aa2.72□□□□□ -1.97
NUP88-208ENST00000574087 MROH2AA6NES4 1674 aa2.72□□□□□ -1.97
NUP88-208ENST00000574087 KIF1AQ12756 1690 aa2.72□□□□□ -1.97
NUP88-208ENST00000574087 ROBO3Q96MS0 1386 aa2.72□□□□□ -1.97
NUP88-208ENST00000574087 MROH1Q8NDA8 1641 aa2.71□□□□□ -1.97
NUP88-208ENST00000574087 DENND4AQ7Z401 1863 aa2.71□□□□□ -1.98
NUP88-208ENST00000574087 ZNF106Q9H2Y7 1883 aaKnown RBP2.71□□□□□ -1.98
NUP88-208ENST00000574087 DDX60Q8IY21 1712 aaKnown RBP2.71□□□□□ -1.98
NUP88-208ENST00000574087 NWD1Q149M9 1564 aa2.71□□□□□ -1.98
NUP88-208ENST00000574087 PRG4Q92954 1404 aaPredicted RBP2.71□□□□□ -1.98
NUP88-208ENST00000574087 IGKV1D-13A0A0B4J2D9 117 aa2.71□□□□□ -1.98
NUP88-208ENST00000574087 DHRS12A0PJE2 317 aa2.71□□□□□ -1.98
NUP88-208ENST00000574087 COLCA2A8K830 154 aa2.71□□□□□ -1.98
NUP88-208ENST00000574087 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP2.71□□□□□ -1.98
NUP88-208ENST00000574087 M0R233 179 aa2.71□□□□□ -1.98
NUP88-208ENST00000574087 XKRYO14609 159 aa2.71□□□□□ -1.98
NUP88-208ENST00000574087 IGKV1D-16P01601 117 aa2.71□□□□□ -1.98
NUP88-208ENST00000574087 IGHMP01871 453 aa2.71□□□□□ -1.98
NUP88-208ENST00000574087 BGLAPP02818 100 aa2.71□□□□□ -1.98
NUP88-208ENST00000574087 IGKV5-2P06315 115 aa2.71□□□□□ -1.98
NUP88-208ENST00000574087 PGA5P0DJD9 388 aa2.71□□□□□ -1.98
NUP88-208ENST00000574087 IGKV1-13P0DP09 117 aa2.71□□□□□ -1.98
NUP88-208ENST00000574087 ZNF823P16415 610 aa2.71□□□□□ -1.98
NUP88-208ENST00000574087 CXCL2P19875 107 aa2.71□□□□□ -1.98
NUP88-208ENST00000574087 CXCL3P19876 107 aa2.71□□□□□ -1.98
NUP88-208ENST00000574087 PSMB9P28065 219 aa2.71□□□□□ -1.98
NUP88-208ENST00000574087 AGTR1P30556 359 aa2.71□□□□□ -1.98
NUP88-208ENST00000574087 INPP1P49441 399 aa2.71□□□□□ -1.98
NUP88-208ENST00000574087 SUB1P53999 127 aaKnown RBP eCLIP2.71□□□□□ -1.98
NUP88-208ENST00000574087 MEF2BQ02080 365 aaPredicted RBP2.71□□□□□ -1.98
NUP88-208ENST00000574087 LAMTOR4Q0VGL1 99 aa2.71□□□□□ -1.98
NUP88-208ENST00000574087 ENDOGQ14249 297 aaKnown RBP2.71□□□□□ -1.98
NUP88-208ENST00000574087 FAM201AQ5SY85 155 aa2.71□□□□□ -1.98
NUP88-208ENST00000574087 GLT8D1Q68CQ7 371 aa2.71□□□□□ -1.98
NUP88-208ENST00000574087 FOXI2Q6ZQN5 318 aa2.71□□□□□ -1.98
NUP88-208ENST00000574087 MRPL55Q7Z7F7 128 aaKnown RBP2.71□□□□□ -1.98
NUP88-208ENST00000574087 GKN2Q86XP6 184 aa2.71□□□□□ -1.98
NUP88-208ENST00000574087 SLC25A45Q8N413 288 aa2.71□□□□□ -1.98
NUP88-208ENST00000574087 OR8D4Q8NGM9 314 aa2.71□□□□□ -1.98
NUP88-208ENST00000574087 FNDC9Q8TBE3 224 aa2.71□□□□□ -1.98
NUP88-208ENST00000574087 NT5CQ8TCD5 201 aa2.71□□□□□ -1.98
NUP88-208ENST00000574087 RXFP4Q8TDU9 374 aa2.71□□□□□ -1.98
NUP88-208ENST00000574087 ADAT3Q96EY9 351 aaPredicted RBP2.71□□□□□ -1.98
NUP88-208ENST00000574087 OR2M4Q96R27 311 aa2.71□□□□□ -1.98
NUP88-208ENST00000574087 HSD17B10Q99714 261 aaKnown RBP2.71□□□□□ -1.98
NUP88-208ENST00000574087 GINS4Q9BRT9 223 aa2.71□□□□□ -1.98
NUP88-208ENST00000574087 ANAPC13Q9BS18 74 aa2.71□□□□□ -1.98
NUP88-208ENST00000574087 PRADC1Q9BSG0 188 aa2.71□□□□□ -1.98
NUP88-208ENST00000574087 TMEM70Q9BUB7 260 aa2.71□□□□□ -1.98
NUP88-208ENST00000574087 PBDC1Q9BVG4 233 aa2.71□□□□□ -1.98
NUP88-208ENST00000574087 SCRT1Q9BWW7 348 aa2.71□□□□□ -1.98
NUP88-208ENST00000574087 ZNF471Q9BX82 626 aaPredicted RBP2.71□□□□□ -1.98
NUP88-208ENST00000574087 ULBP3Q9BZM4 244 aa2.71□□□□□ -1.98
NUP88-208ENST00000574087 PBOV1Q9GZY1 135 aa2.71□□□□□ -1.98
NUP88-208ENST00000574087 GTSF1LQ9H1H1 148 aa2.71□□□□□ -1.98
NUP88-208ENST00000574087 ZNF257Q9Y2Q1 563 aa2.71□□□□□ -1.98
NUP88-208ENST00000574087 YTHDF2Q9Y5A9 579 aaKnown RBP2.71□□□□□ -1.98
NUP88-208ENST00000574087 UBIAD1Q9Y5Z9 338 aa2.71□□□□□ -1.98
NUP88-208ENST00000574087 ZNF142P52746 1687 aaPredicted RBP2.71□□□□□ -1.98
NUP88-208ENST00000574087 LAMB1P07942 1786 aa2.71□□□□□ -1.98
NUP88-208ENST00000574087 DOCK3Q8IZD9 2030 aa2.71□□□□□ -1.98
NUP88-208ENST00000574087 RAPGEF6Q8TEU7 1601 aa2.71□□□□□ -1.98
NUP88-208ENST00000574087 SBF1O95248 1867 aa2.71□□□□□ -1.98
NUP88-208ENST00000574087 CDK5RAP2Q96SN8 1893 aa2.71□□□□□ -1.98
NUP88-208ENST00000574087 PIKFYVEQ9Y2I7 2098 aa2.7□□□□□ -1.98
NUP88-208ENST00000574087 CAMTA1Q9Y6Y1 1673 aa2.7□□□□□ -1.98
NUP88-208ENST00000574087 ANKRD36CQ5JPF3 1778 aa2.7□□□□□ -1.98
NUP88-208ENST00000574087 TULP4Q9NRJ4 1543 aa2.7□□□□□ -1.98
NUP88-208ENST00000574087 C5orf63A6NC05 138 aa2.7□□□□□ -1.98
NUP88-208ENST00000574087 RBFOX3A6NFN3 312 aa2.7□□□□□ -1.98
NUP88-208ENST00000574087 ZNF850A8MQ14 1090 aa2.7□□□□□ -1.98
NUP88-208ENST00000574087 BBIP1A8MTZ0 92 aa2.7□□□□□ -1.98
NUP88-208ENST00000574087 H0YJW9 148 aa2.7□□□□□ -1.98
NUP88-208ENST00000574087 MAS1P04201 325 aa2.7□□□□□ -1.98
NUP88-208ENST00000574087 OR5AC1P0C628 307 aa2.7□□□□□ -1.98
NUP88-208ENST00000574087 PGA4P0DJD7 388 aa2.7□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms