RNA–Protein interactions for RNA: ENST00000573584.5

NUP88-207, Transcript of nucleoporin 88, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP88, Length 2,916 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-207ENST00000573584 TMEM183BQ1AE95 376 aa12.8□□□□□ -0.36
NUP88-207ENST00000573584 TIGITQ495A1 244 aa12.8□□□□□ -0.36
NUP88-207ENST00000573584 ITLN1Q8WWA0 313 aa12.8□□□□□ -0.36
NUP88-207ENST00000573584 MIEN1Q9BRT3 115 aa12.8□□□□□ -0.36
NUP88-207ENST00000573584 IGKV1OR2-108A0A075B7D4 117 aa12.8□□□□□ -0.36
NUP88-207ENST00000573584 CX3CL1P78423 397 aa12.8□□□□□ -0.36
NUP88-207ENST00000573584 SRSF6Q13247 344 aaKnown RBP12.8□□□□□ -0.36
NUP88-207ENST00000573584 DUX4L9Q6RFH8 374 aaPredicted RBP12.8□□□□□ -0.36
NUP88-207ENST00000573584 SIGLECL1Q8N7X8 197 aa12.8□□□□□ -0.36
NUP88-207ENST00000573584 GNB4Q9HAV0 340 aa12.8□□□□□ -0.36
NUP88-207ENST00000573584 GCM1Q9NP62 436 aa12.8□□□□□ -0.36
NUP88-207ENST00000573584 ASPMQ8IZT6 3477 aa12.8□□□□□ -0.36
NUP88-207ENST00000573584 M0QZK8 103 aa12.79□□□□□ -0.36
NUP88-207ENST00000573584 M0R1B8 84 aa12.79□□□□□ -0.36
NUP88-207ENST00000573584 OR10J4P0C629 311 aa12.79□□□□□ -0.36
NUP88-207ENST00000573584 KLF3P57682 345 aaPredicted RBP12.79□□□□□ -0.36
NUP88-207ENST00000573584 SLC35B1P78383 322 aa12.79□□□□□ -0.36
NUP88-207ENST00000573584 FXYD3Q14802 87 aa12.79□□□□□ -0.36
NUP88-207ENST00000573584 POU2AF1Q16633 256 aa12.79□□□□□ -0.36
NUP88-207ENST00000573584 ZNF503Q96F45 646 aa12.79□□□□□ -0.36
NUP88-207ENST00000573584 FAM103A1Q9BTL3 118 aaKnown RBP12.79□□□□□ -0.36
NUP88-207ENST00000573584 VAMP8Q9BV40 100 aa12.79□□□□□ -0.36
NUP88-207ENST00000573584 PRCDQ00LT1 54 aa12.79□□□□□ -0.36
NUP88-207ENST00000573584 FAM169BQ8N8A8 192 aa12.79□□□□□ -0.36
NUP88-207ENST00000573584 NCOR1P1Q9H4R4 102 aa12.79□□□□□ -0.36
NUP88-207ENST00000573584 DKK4Q9UBT3 224 aa12.79□□□□□ -0.36
NUP88-207ENST00000573584 INTS1Q8N201 2190 aaKnown RBP12.79□□□□□ -0.36
NUP88-207ENST00000573584 CFAP47Q6ZTR5 3102 aa12.79□□□□□ -0.36
NUP88-207ENST00000573584 TRAV17A0A0B4J275 112 aa12.78□□□□□ -0.36
NUP88-207ENST00000573584 TCL1AP56279 114 aa12.78□□□□□ -0.36
NUP88-207ENST00000573584 SUMO1P63165 101 aaKnown RBP12.78□□□□□ -0.36
NUP88-207ENST00000573584 WDR73Q6P4I2 378 aa12.78□□□□□ -0.36
NUP88-207ENST00000573584 DEFB108BQ8NET1 73 aa12.78□□□□□ -0.36
NUP88-207ENST00000573584 OSTCQ9NRP0 149 aa12.78□□□□□ -0.36
NUP88-207ENST00000573584 ZNF257Q9Y2Q1 563 aa12.78□□□□□ -0.36
NUP88-207ENST00000573584 CACNA1GO43497 2377 aa12.78□□□□□ -0.36
NUP88-207ENST00000573584 CADP27708 2225 aa12.78□□□□□ -0.36
NUP88-207ENST00000573584 GGTLC3B5MD39 225 aa12.78□□□□□ -0.36
NUP88-207ENST00000573584 UPK2O00526 184 aa12.78□□□□□ -0.36
NUP88-207ENST00000573584 MT-ND6P03923 174 aa12.78□□□□□ -0.36
NUP88-207ENST00000573584 IGKV1-16P04430 117 aa12.78□□□□□ -0.36
NUP88-207ENST00000573584 GPX1P07203 203 aa12.78□□□□□ -0.36
NUP88-207ENST00000573584 MLANAQ16655 118 aa12.78□□□□□ -0.36
NUP88-207ENST00000573584 KIAA1644Q3SXP7 199 aa12.78□□□□□ -0.36
NUP88-207ENST00000573584 ZNF439Q8NDP4 499 aa12.78□□□□□ -0.36
NUP88-207ENST00000573584 SRRM4A7MD48 611 aaKnown RBP12.78□□□□□ -0.36
NUP88-207ENST00000573584 ZNF25P17030 456 aaPredicted RBP12.78□□□□□ -0.36
NUP88-207ENST00000573584 BRS3P32247 399 aa12.78□□□□□ -0.36
NUP88-207ENST00000573584 CASP6P55212 293 aa12.78□□□□□ -0.36
NUP88-207ENST00000573584 TAS2R45P59539 299 aa12.78□□□□□ -0.36
NUP88-207ENST00000573584 SLC35E1Q96K37 410 aa12.78□□□□□ -0.36
NUP88-207ENST00000573584 ZFHX4Q86UP3 3567 aa12.77□□□□□ -0.36
NUP88-207ENST00000573584 LOXL4Q96JB6 756 aa12.77□□□□□ -0.36
NUP88-207ENST00000573584 FBXL7Q9UJT9 491 aa12.77□□□□□ -0.36
NUP88-207ENST00000573584 TEX50A0A1B0GTY4 177 aa12.77□□□□□ -0.37
NUP88-207ENST00000573584 CT45A6P0DMU7 189 aa12.77□□□□□ -0.37
NUP88-207ENST00000573584 CT45A5P0DMU8 189 aa12.77□□□□□ -0.37
NUP88-207ENST00000573584 CT45A7P0DMV0 189 aa12.77□□□□□ -0.37
NUP88-207ENST00000573584 MGST1P10620 155 aaKnown RBP12.77□□□□□ -0.37
NUP88-207ENST00000573584 IRF2P14316 349 aa12.77□□□□□ -0.37
NUP88-207ENST00000573584 KRTDAPP60985 99 aa12.77□□□□□ -0.37
NUP88-207ENST00000573584 TMEM136Q6ZRR5 245 aa12.77□□□□□ -0.37
NUP88-207ENST00000573584 OR9G1Q8NH87 305 aa12.77□□□□□ -0.37
NUP88-207ENST00000573584 SLC35D1Q9NTN3 355 aa12.77□□□□□ -0.37
NUP88-207ENST00000573584 ISLRO14498 428 aa12.76□□□□□ -0.37
NUP88-207ENST00000573584 MMP23AO75900 390 aa12.76□□□□□ -0.37
NUP88-207ENST00000573584 GLRXP35754 106 aa12.76□□□□□ -0.37
NUP88-207ENST00000573584 COMPP49747 757 aaPredicted RBP12.76□□□□□ -0.37
NUP88-207ENST00000573584 RTL8BQ17RB0 113 aa12.76□□□□□ -0.37
NUP88-207ENST00000573584 C19orf24Q9BVV8 132 aa12.76□□□□□ -0.37
NUP88-207ENST00000573584 SERTAD4Q9NUC0 356 aa12.76□□□□□ -0.37
NUP88-207ENST00000573584 ZNF586Q9NXT0 402 aa12.76□□□□□ -0.37
NUP88-207ENST00000573584 RNF7Q9UBF6 113 aa12.76□□□□□ -0.37
NUP88-207ENST00000573584 RNF114Q9Y508 228 aa12.76□□□□□ -0.37
NUP88-207ENST00000573584 RPLP1P05386 114 aaKnown RBP12.76□□□□□ -0.37
NUP88-207ENST00000573584 OR5G3P0C626 314 aa12.76□□□□□ -0.37
NUP88-207ENST00000573584 IBA57Q5T440 356 aaKnown RBP12.76□□□□□ -0.37
NUP88-207ENST00000573584 MRPL52Q86TS9 123 aaKnown RBP12.76□□□□□ -0.37
NUP88-207ENST00000573584 TBL2Q9Y4P3 447 aaKnown RBP12.76□□□□□ -0.37
NUP88-207ENST00000573584 TNCP24821 2201 aa12.76□□□□□ -0.37
NUP88-207ENST00000573584 C2orf83Q53S99 150 aa12.75□□□□□ -0.37
NUP88-207ENST00000573584 IGFL2Q6UWQ7 119 aa12.75□□□□□ -0.37
NUP88-207ENST00000573584 FAM222BQ8WU58 562 aa12.75□□□□□ -0.37
NUP88-207ENST00000573584 CCL13Q99616 98 aa12.75□□□□□ -0.37
NUP88-207ENST00000573584 SLC25A33Q9BSK2 321 aa12.75□□□□□ -0.37
NUP88-207ENST00000573584 ZNRD1Q9P1U0 126 aa12.75□□□□□ -0.37
NUP88-207ENST00000573584 A0A1W2PRE2 83 aa12.75□□□□□ -0.37
NUP88-207ENST00000573584 PCNX2A6NKB5 2137 aa12.75□□□□□ -0.37
NUP88-207ENST00000573584 ZNF253O75346 499 aa12.75□□□□□ -0.37
NUP88-207ENST00000573584 IGLV2-8P01709 118 aa12.75□□□□□ -0.37
NUP88-207ENST00000573584 C8orf88P0DMB2 117 aa12.75□□□□□ -0.37
NUP88-207ENST00000573584 AMTP48728 403 aa12.75□□□□□ -0.37
NUP88-207ENST00000573584 PPOXP50336 477 aa12.75□□□□□ -0.37
NUP88-207ENST00000573584 COX19Q49B96 90 aa12.75□□□□□ -0.37
NUP88-207ENST00000573584 OR10J3Q5JRS4 329 aa12.75□□□□□ -0.37
NUP88-207ENST00000573584 MRPL54Q6P161 138 aaKnown RBP12.75□□□□□ -0.37
NUP88-207ENST00000573584 SEM1Q6ZVN7 128 aa12.75□□□□□ -0.37
NUP88-207ENST00000573584 DSCAMO60469 2012 aa12.75□□□□□ -0.37
NUP88-207ENST00000573584 ATP5IP56385 69 aaPredicted RBP12.75□□□□□ -0.37
NUP88-207ENST00000573584 STUMQ69YW2 141 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms