RNA–Protein interactions for RNA: ENST00000572665.1

CIITA-208, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 560 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-208ENST00000572665 PLEKHA3Q9HB20 300 aa6.97□□□□□ -1.29
CIITA-208ENST00000572665 SLC2A9Q9NRM0 540 aa6.97□□□□□ -1.29
CIITA-208ENST00000572665 ANXA10Q9UJ72 324 aa6.97□□□□□ -1.29
CIITA-208ENST00000572665 TNCP24821 2201 aa6.97□□□□□ -1.29
CIITA-208ENST00000572665 TRBV7-1A0A0A6YYK4 115 aa6.96□□□□□ -1.3
CIITA-208ENST00000572665 IZUMO1RA6ND01 250 aa6.96□□□□□ -1.3
CIITA-208ENST00000572665 C2orf70A6NJV1 201 aa6.96□□□□□ -1.3
CIITA-208ENST00000572665 J3QRK9 145 aa6.96□□□□□ -1.3
CIITA-208ENST00000572665 PRH1P02810 166 aa6.96□□□□□ -1.3
CIITA-208ENST00000572665 SMIM18P0DKX4 95 aa6.96□□□□□ -1.3
CIITA-208ENST00000572665 FOLR2P14207 255 aa6.96□□□□□ -1.3
CIITA-208ENST00000572665 NFYAP23511 347 aaPredicted RBP6.96□□□□□ -1.3
CIITA-208ENST00000572665 FGF9P31371 208 aaPredicted RBP6.96□□□□□ -1.3
CIITA-208ENST00000572665 ZNF45Q02386 682 aa6.96□□□□□ -1.3
CIITA-208ENST00000572665 PLA2G7Q13093 441 aa6.96□□□□□ -1.3
CIITA-208ENST00000572665 CATR1Q13166 79 aa6.96□□□□□ -1.3
CIITA-208ENST00000572665 NEDD8Q15843 81 aa6.96□□□□□ -1.3
CIITA-208ENST00000572665 MRGPRG-AS1Q2M3A8 158 aa6.96□□□□□ -1.3
CIITA-208ENST00000572665 DEFB114Q30KQ6 69 aa6.96□□□□□ -1.3
CIITA-208ENST00000572665 ZNF57Q68EA5 555 aaPredicted RBP6.96□□□□□ -1.3
CIITA-208ENST00000572665 MARC2Q969Z3 335 aa6.96□□□□□ -1.3
CIITA-208ENST00000572665 C5orf30Q96GV9 206 aa6.96□□□□□ -1.3
CIITA-208ENST00000572665 RBM38Q9H0Z9 239 aaKnown RBP6.96□□□□□ -1.3
CIITA-208ENST00000572665 HIPK2Q9H2X6 1198 aa6.96□□□□□ -1.3
CIITA-208ENST00000572665 SRD5A3Q9H8P0 318 aa6.96□□□□□ -1.3
CIITA-208ENST00000572665 ZC4H2Q9NQZ6 224 aa6.96□□□□□ -1.3
CIITA-208ENST00000572665 SPATA2Q9UM82 520 aa6.96□□□□□ -1.3
CIITA-208ENST00000572665 SSR3Q9UNL2 185 aa6.96□□□□□ -1.3
CIITA-208ENST00000572665 A0A0A6YYH2 397 aa6.95□□□□□ -1.3
CIITA-208ENST00000572665 ZNF320A2RRD8 509 aa6.95□□□□□ -1.3
CIITA-208ENST00000572665 A6NJ64 397 aa6.95□□□□□ -1.3
CIITA-208ENST00000572665 PPP5D1E7EU14 171 aa6.95□□□□□ -1.3
CIITA-208ENST00000572665 CRYGCP07315 174 aa6.95□□□□□ -1.3
CIITA-208ENST00000572665 ZNF735P0CB33 412 aa6.95□□□□□ -1.3
CIITA-208ENST00000572665 CBLN1P23435 193 aa6.95□□□□□ -1.3
CIITA-208ENST00000572665 PSMB6P28072 239 aa6.95□□□□□ -1.3
CIITA-208ENST00000572665 RPL8P62917 257 aaKnown RBP6.95□□□□□ -1.3
CIITA-208ENST00000572665 OR2B11Q5JQS5 317 aa6.95□□□□□ -1.3
CIITA-208ENST00000572665 THOC7Q6I9Y2 204 aaKnown RBP6.95□□□□□ -1.3
CIITA-208ENST00000572665 LINC00322Q6ZN03 302 aaPredicted RBP6.95□□□□□ -1.3
CIITA-208ENST00000572665 RBPMS2Q6ZRY4 209 aaKnown RBP6.95□□□□□ -1.3
CIITA-208ENST00000572665 HSD17B13Q7Z5P4 300 aaPredicted RBP6.95□□□□□ -1.3
CIITA-208ENST00000572665 PUSL1Q8N0Z8 303 aaKnown RBP6.95□□□□□ -1.3
CIITA-208ENST00000572665 OR52B4Q8NGK2 314 aa6.95□□□□□ -1.3
CIITA-208ENST00000572665 CD300LFQ8TDQ1 290 aa6.95□□□□□ -1.3
CIITA-208ENST00000572665 SRSF8Q9BRL6 282 aaKnown RBP6.95□□□□□ -1.3
CIITA-208ENST00000572665 COMMD5Q9GZQ3 224 aa6.95□□□□□ -1.3
CIITA-208ENST00000572665 HRASLSQ9HDD0 168 aa6.95□□□□□ -1.3
CIITA-208ENST00000572665 VCX3AQ9NNX9 186 aa6.95□□□□□ -1.3
CIITA-208ENST00000572665 BET1LQ9NYM9 111 aa6.95□□□□□ -1.3
CIITA-208ENST00000572665 TAS2R8Q9NYW2 309 aa6.95□□□□□ -1.3
CIITA-208ENST00000572665 DAPK2Q9UIK4 370 aa6.95□□□□□ -1.3
CIITA-208ENST00000572665 ETV7Q9Y603 341 aa6.95□□□□□ -1.3
CIITA-208ENST00000572665 IGKV1D-8A0A087WSZ0 117 aa6.94□□□□□ -1.3
CIITA-208ENST00000572665 TRAV25A0A0B4J276 109 aa6.94□□□□□ -1.3
CIITA-208ENST00000572665 TMEM235A6NFC5 223 aa6.94□□□□□ -1.3
CIITA-208ENST00000572665 A8MWP6 167 aa6.94□□□□□ -1.3
CIITA-208ENST00000572665 RBFOX2O43251 390 aaKnown RBP eCLIP6.94□□□□□ -1.3
CIITA-208ENST00000572665 HPRT1P00492 218 aa6.94□□□□□ -1.3
CIITA-208ENST00000572665 CD7P09564 240 aa6.94□□□□□ -1.3
CIITA-208ENST00000572665 MYOD1P15172 320 aa6.94□□□□□ -1.3
CIITA-208ENST00000572665 HLA-GP17693 338 aa6.94□□□□□ -1.3
CIITA-208ENST00000572665 CBX5P45973 191 aa6.94□□□□□ -1.3
CIITA-208ENST00000572665 TAS2R31P59538 309 aa6.94□□□□□ -1.3
CIITA-208ENST00000572665 CLEC19AQ6UXS0 136 aa6.94□□□□□ -1.3
CIITA-208ENST00000572665 ADAMTSL5Q6ZMM2 481 aa6.94□□□□□ -1.3
CIITA-208ENST00000572665 SLC38A6Q8IZM9 456 aa6.94□□□□□ -1.3
CIITA-208ENST00000572665 VKORC1L1Q8N0U8 176 aa6.94□□□□□ -1.3
CIITA-208ENST00000572665 DEFB125Q8N687 156 aa6.94□□□□□ -1.3
CIITA-208ENST00000572665 BEST4Q8NFU0 473 aa6.94□□□□□ -1.3
CIITA-208ENST00000572665 NUDCD2Q8WVJ2 157 aa6.94□□□□□ -1.3
CIITA-208ENST00000572665 SECTM1Q8WVN6 248 aa6.94□□□□□ -1.3
CIITA-208ENST00000572665 GGTLC1Q9BX51 225 aa6.94□□□□□ -1.3
CIITA-208ENST00000572665 KRTAP4-5Q9BYR2 181 aa6.94□□□□□ -1.3
CIITA-208ENST00000572665 DIABLOQ9NR28 239 aa6.94□□□□□ -1.3
CIITA-208ENST00000572665 TXNL4BQ9NX01 149 aaKnown RBP6.94□□□□□ -1.3
CIITA-208ENST00000572665 RHBDL2Q9NX52 303 aa6.94□□□□□ -1.3
CIITA-208ENST00000572665 UFC1Q9Y3C8 167 aa6.94□□□□□ -1.3
CIITA-208ENST00000572665 LOC102724200A0A096LPH7 203 aaPredicted RBP6.93□□□□□ -1.3
CIITA-208ENST00000572665 IGHV4-28A0A0C4DH34 117 aa6.93□□□□□ -1.3
CIITA-208ENST00000572665 NQO2P16083 231 aa6.93□□□□□ -1.3
CIITA-208ENST00000572665 CTRB1P17538 263 aa6.93□□□□□ -1.3
CIITA-208ENST00000572665 FCGR2CP31995 323 aa6.93□□□□□ -1.3
CIITA-208ENST00000572665 APOC4P55056 127 aa6.93□□□□□ -1.3
CIITA-208ENST00000572665 ERVK-16P61578 105 aa6.93□□□□□ -1.3
CIITA-208ENST00000572665 RPL30P62888 115 aaKnown RBP6.93□□□□□ -1.3
CIITA-208ENST00000572665 KLK9Q2XQG4 91 aa6.93□□□□□ -1.3
CIITA-208ENST00000572665 C10orf55Q5SWW7 151 aa6.93□□□□□ -1.3
CIITA-208ENST00000572665 CTRB2Q6GPI1 263 aa6.93□□□□□ -1.3
CIITA-208ENST00000572665 LAMTOR1Q6IAA8 161 aa6.93□□□□□ -1.3
CIITA-208ENST00000572665 SFXN4Q6P4A7 337 aa6.93□□□□□ -1.3
CIITA-208ENST00000572665 PLET1Q6UQ28 207 aa6.93□□□□□ -1.3
CIITA-208ENST00000572665 SSX9Q7RTT3 188 aa6.93□□□□□ -1.3
CIITA-208ENST00000572665 SPAG16Q8N0X2 631 aa6.93□□□□□ -1.3
CIITA-208ENST00000572665 OR13F1Q8NGS4 319 aa6.93□□□□□ -1.3
CIITA-208ENST00000572665 YIPF6Q96EC8 236 aa6.93□□□□□ -1.3
CIITA-208ENST00000572665 MRPS26Q9BYN8 205 aaKnown RBP6.93□□□□□ -1.3
CIITA-208ENST00000572665 MRPL27Q9P0M9 148 aaKnown RBP6.93□□□□□ -1.3
CIITA-208ENST00000572665 KLK9Q9UKQ9 250 aa6.93□□□□□ -1.3
CIITA-208ENST00000572665 DNAH7Q8WXX0 4024 aa6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms