RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 LHFPL1Q86WI0 220 aa6.19□□□□□ -1.42
VPS53-214ENST00000572607 SGPP2Q8IWX5 399 aa6.19□□□□□ -1.42
VPS53-214ENST00000572607 CADM3Q8N126 398 aa6.19□□□□□ -1.42
VPS53-214ENST00000572607 GDPD1Q8N9F7 314 aa6.19□□□□□ -1.42
VPS53-214ENST00000572607 OR1L6Q8NGR2 347 aa6.19□□□□□ -1.42
VPS53-214ENST00000572607 MCFD2Q8NI22 146 aa6.19□□□□□ -1.42
VPS53-214ENST00000572607 RNASE11Q8TAA1 199 aaKnown RBP6.19□□□□□ -1.42
VPS53-214ENST00000572607 DYNLRB2Q8TF09 96 aa6.19□□□□□ -1.42
VPS53-214ENST00000572607 SMIM4Q8WVI0 70 aa6.19□□□□□ -1.42
VPS53-214ENST00000572607 MRGPRFQ96AM1 343 aa6.19□□□□□ -1.42
VPS53-214ENST00000572607 ISOC1Q96CN7 298 aa6.19□□□□□ -1.42
VPS53-214ENST00000572607 PDCD10Q9BUL8 212 aa6.19□□□□□ -1.42
VPS53-214ENST00000572607 C14orf166Q9Y224 244 aaKnown RBP6.19□□□□□ -1.42
VPS53-214ENST00000572607 LSM4Q9Y4Z0 139 aaKnown RBP6.19□□□□□ -1.42
VPS53-214ENST00000572607 HUWE1Q7Z6Z7 4374 aaKnown RBP6.19□□□□□ -1.42
VPS53-214ENST00000572607 C3orf85A0A1B0GTC6 90 aa6.18□□□□□ -1.42
VPS53-214ENST00000572607 A0A1B0GW64 132 aa6.18□□□□□ -1.42
VPS53-214ENST00000572607 FABP12A6NFH5 140 aa6.18□□□□□ -1.42
VPS53-214ENST00000572607 CGB1A6NKQ9 187 aa6.18□□□□□ -1.42
VPS53-214ENST00000572607 C15orf61A6NNL5 157 aa6.18□□□□□ -1.42
VPS53-214ENST00000572607 PPP5D1E7EU14 171 aa6.18□□□□□ -1.42
VPS53-214ENST00000572607 H3BMQ9 156 aa6.18□□□□□ -1.42
VPS53-214ENST00000572607 CTDSPLO15194 276 aa6.18□□□□□ -1.42
VPS53-214ENST00000572607 B3GALNT1O75752 331 aa6.18□□□□□ -1.42
VPS53-214ENST00000572607 IGHV3-23P01764 117 aa6.18□□□□□ -1.42
VPS53-214ENST00000572607 CD74P04233 296 aa6.18□□□□□ -1.42
VPS53-214ENST00000572607 AKAIN1P0CW23 69 aa6.18□□□□□ -1.42
VPS53-214ENST00000572607 PTBP1P26599 531 aaKnown RBP eCLIP6.18□□□□□ -1.42
VPS53-214ENST00000572607 S100A5P33763 92 aa6.18□□□□□ -1.42
VPS53-214ENST00000572607 KRTAP19-4Q3LI73 84 aa6.18□□□□□ -1.42
VPS53-214ENST00000572607 FAM106AQ4KMX7 169 aa6.18□□□□□ -1.42
VPS53-214ENST00000572607 SLC25A24Q6NUK1 477 aa6.18□□□□□ -1.42
VPS53-214ENST00000572607 CLEC19AQ6UXS0 136 aa6.18□□□□□ -1.42
VPS53-214ENST00000572607 GTSCR1Q86UQ5 136 aa6.18□□□□□ -1.42
VPS53-214ENST00000572607 Q8N402 240 aa6.18□□□□□ -1.42
VPS53-214ENST00000572607 OR2K2Q8NGT1 345 aa6.18□□□□□ -1.42
VPS53-214ENST00000572607 TERB2Q8NHR7 220 aa6.18□□□□□ -1.42
VPS53-214ENST00000572607 PRRT1Q99946 306 aa6.18□□□□□ -1.42
VPS53-214ENST00000572607 NDUFA4L2Q9NRX3 87 aa6.18□□□□□ -1.42
VPS53-214ENST00000572607 SIGLEC8Q9NYZ4 499 aa6.18□□□□□ -1.42
VPS53-214ENST00000572607 NSG2Q9Y328 171 aa6.18□□□□□ -1.42
VPS53-214ENST00000572607 S4R3C0 116 aa6.18□□□□□ -1.42
VPS53-214ENST00000572607 U3KQE9 123 aa6.18□□□□□ -1.42
VPS53-214ENST00000572607 TEX13DA0A0J9YY54 714 aaPredicted RBP6.17□□□□□ -1.42
VPS53-214ENST00000572607 ZNF320A2RRD8 509 aa6.17□□□□□ -1.42
VPS53-214ENST00000572607 MFSD2BA6NFX1 497 aa6.17□□□□□ -1.42
VPS53-214ENST00000572607 OR2C1O95371 312 aa6.17□□□□□ -1.42
VPS53-214ENST00000572607 CLEC3BP05452 202 aa6.17□□□□□ -1.42
VPS53-214ENST00000572607 CTSDP07339 412 aaPredicted RBP6.17□□□□□ -1.42
VPS53-214ENST00000572607 CSN3P07498 182 aa6.17□□□□□ -1.42
VPS53-214ENST00000572607 PI3P19957 117 aa6.17□□□□□ -1.42
VPS53-214ENST00000572607 GPR183P32249 361 aa6.17□□□□□ -1.42
VPS53-214ENST00000572607 ERHP84090 104 aaKnown RBP6.17□□□□□ -1.42
VPS53-214ENST00000572607 WT1-ASQ06250 92 aa6.17□□□□□ -1.42
VPS53-214ENST00000572607 SURF2Q15527 256 aaPredicted RBP6.17□□□□□ -1.42
VPS53-214ENST00000572607 KLK9Q2XQG4 91 aa6.17□□□□□ -1.42
VPS53-214ENST00000572607 PLET1Q6UQ28 207 aa6.17□□□□□ -1.42
VPS53-214ENST00000572607 GPHB5Q86YW7 130 aa6.17□□□□□ -1.42
VPS53-214ENST00000572607 OR10W1Q8NGF6 305 aa6.17□□□□□ -1.42
VPS53-214ENST00000572607 OR13C8Q8NGS7 320 aa6.17□□□□□ -1.42
VPS53-214ENST00000572607 MARCH1Q8TCQ1 289 aa6.17□□□□□ -1.42
VPS53-214ENST00000572607 VN1R17PQ8TDU5 208 aa6.17□□□□□ -1.42
VPS53-214ENST00000572607 RRNAD1Q96FB5 475 aaKnown RBP6.17□□□□□ -1.42
VPS53-214ENST00000572607 SEC22AQ96IW7 307 aa6.17□□□□□ -1.42
VPS53-214ENST00000572607 SCGB3A2Q96PL1 93 aa6.17□□□□□ -1.42
VPS53-214ENST00000572607 SLIRPQ9GZT3 109 aaKnown RBP6.17□□□□□ -1.42
VPS53-214ENST00000572607 PLEKHA3Q9HB20 300 aa6.17□□□□□ -1.42
VPS53-214ENST00000572607 PALMDQ9NP74 551 aa6.17□□□□□ -1.42
VPS53-214ENST00000572607 GAR1Q9NY12 217 aaKnown RBP6.17□□□□□ -1.42
VPS53-214ENST00000572607 SCP2D1Q9UJQ7 156 aa6.17□□□□□ -1.42
VPS53-214ENST00000572607 KLK9Q9UKQ9 250 aa6.17□□□□□ -1.42
VPS53-214ENST00000572607 F11RQ9Y624 299 aaKnown RBP6.17□□□□□ -1.42
VPS53-214ENST00000572607 TMEM238LA0A1B0GVL6 79 aa6.16□□□□□ -1.42
VPS53-214ENST00000572607 LGALS9O00182 355 aa6.16□□□□□ -1.42
VPS53-214ENST00000572607 GSTZ1O43708 216 aaPredicted RBP6.16□□□□□ -1.42
VPS53-214ENST00000572607 HLA-AP01891 365 aaKnown RBP6.16□□□□□ -1.42
VPS53-214ENST00000572607 FAUP35544 74 aaKnown RBP6.16□□□□□ -1.42
VPS53-214ENST00000572607 AP3S2P59780 193 aa6.16□□□□□ -1.42
VPS53-214ENST00000572607 HSPE1P61604 102 aaKnown RBP6.16□□□□□ -1.42
VPS53-214ENST00000572607 PRCDQ00LT1 54 aa6.16□□□□□ -1.42
VPS53-214ENST00000572607 Q56UQ5 140 aa6.16□□□□□ -1.42
VPS53-214ENST00000572607 FAAP20Q6NZ36 180 aa6.16□□□□□ -1.42
VPS53-214ENST00000572607 IL34Q6ZMJ4 242 aa6.16□□□□□ -1.42
VPS53-214ENST00000572607 SLC35G3Q8N808 338 aa6.16□□□□□ -1.42
VPS53-214ENST00000572607 OR4D10Q8NGI6 311 aa6.16□□□□□ -1.42
VPS53-214ENST00000572607 OR4C16Q8NGL9 310 aa6.16□□□□□ -1.42
VPS53-214ENST00000572607 CCDC140Q96MF4 163 aa6.16□□□□□ -1.42
VPS53-214ENST00000572607 TP53RKQ96S44 253 aa6.16□□□□□ -1.42
VPS53-214ENST00000572607 ASCL2Q99929 193 aa6.16□□□□□ -1.42
VPS53-214ENST00000572607 NAA60Q9H7X0 242 aa6.16□□□□□ -1.42
VPS53-214ENST00000572607 ENY2Q9NPA8 101 aa6.16□□□□□ -1.42
VPS53-214ENST00000572607 ZC4H2Q9NQZ6 224 aa6.16□□□□□ -1.42
VPS53-214ENST00000572607 TMEM14BQ9NUH8 114 aa6.16□□□□□ -1.42
VPS53-214ENST00000572607 MCUBQ9NWR8 336 aa6.16□□□□□ -1.42
VPS53-214ENST00000572607 SLC2A8Q9NY64 477 aa6.16□□□□□ -1.42
VPS53-214ENST00000572607 C21orf62Q9NYP8 219 aa6.16□□□□□ -1.42
VPS53-214ENST00000572607 TECRQ9NZ01 308 aaKnown RBP6.16□□□□□ -1.42
VPS53-214ENST00000572607 UFC1Q9Y3C8 167 aa6.16□□□□□ -1.42
VPS53-214ENST00000572607 CEPT1Q9Y6K0 416 aa6.16□□□□□ -1.42
VPS53-214ENST00000572607 C2orf70A6NJV1 201 aa6.15□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms