RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 NMSQ5H8A3 153 aa12.83□□□□□ -0.36
CIITA-204ENST00000570546 ZNF581Q9P0T4 197 aa12.83□□□□□ -0.36
CIITA-204ENST00000570546 SAA1P0DJI8 122 aaPredicted RBP12.83□□□□□ -0.36
CIITA-204ENST00000570546 CEACAM1P13688 526 aa12.83□□□□□ -0.36
CIITA-204ENST00000570546 GFRA1P56159 465 aa12.83□□□□□ -0.36
CIITA-204ENST00000570546 RELQ04864 619 aaPredicted RBP12.83□□□□□ -0.36
CIITA-204ENST00000570546 TMEM144Q7Z5S9 345 aa12.83□□□□□ -0.36
CIITA-204ENST00000570546 TMEM171Q8WVE6 324 aa12.83□□□□□ -0.36
CIITA-204ENST00000570546 ABCA7Q8IZY2 2146 aa12.83□□□□□ -0.36
CIITA-204ENST00000570546 FREM3P0C091 2139 aa12.82□□□□□ -0.36
CIITA-204ENST00000570546 GAGE10A6NGK3 116 aa12.82□□□□□ -0.36
CIITA-204ENST00000570546 TMEM42Q69YG0 159 aa12.82□□□□□ -0.36
CIITA-204ENST00000570546 RNASEH2CQ8TDP1 164 aaKnown RBP12.82□□□□□ -0.36
CIITA-204ENST00000570546 SEMA5BQ9P283 1151 aa12.82□□□□□ -0.36
CIITA-204ENST00000570546 IZUMO1RA6ND01 250 aa12.82□□□□□ -0.36
CIITA-204ENST00000570546 NAPSAO96009 420 aa12.82□□□□□ -0.36
CIITA-204ENST00000570546 TMEM70Q9BUB7 260 aa12.82□□□□□ -0.36
CIITA-204ENST00000570546 RFNGQ9Y644 331 aa12.82□□□□□ -0.36
CIITA-204ENST00000570546 DGAT2L7PQ6IED9 249 aa12.82□□□□□ -0.36
CIITA-204ENST00000570546 TMEM242Q9NWH2 141 aa12.82□□□□□ -0.36
CIITA-204ENST00000570546 DUTP33316 252 aaKnown RBP12.82□□□□□ -0.36
CIITA-204ENST00000570546 CX3CL1P78423 397 aa12.82□□□□□ -0.36
CIITA-204ENST00000570546 HERPUD1Q15011 391 aa12.82□□□□□ -0.36
CIITA-204ENST00000570546 OR52E5Q8NH55 327 aa12.82□□□□□ -0.36
CIITA-204ENST00000570546 APOBEC3AP31941 199 aaPredicted RBP12.81□□□□□ -0.36
CIITA-204ENST00000570546 GCSAMLQ5JQS6 135 aa12.81□□□□□ -0.36
CIITA-204ENST00000570546 FMC1Q96HJ9 113 aa12.81□□□□□ -0.36
CIITA-204ENST00000570546 CLDN16Q9Y5I7 305 aa12.81□□□□□ -0.36
CIITA-204ENST00000570546 ARHGEF17Q96PE2 2063 aaPredicted RBP12.81□□□□□ -0.36
CIITA-204ENST00000570546 PLXNA4Q9HCM2 1894 aa12.81□□□□□ -0.36
CIITA-204ENST00000570546 TRAV1-1A0A0B4J248 108 aa12.81□□□□□ -0.36
CIITA-204ENST00000570546 K7ERU9 68 aa12.81□□□□□ -0.36
CIITA-204ENST00000570546 ADCYAP1P18509 176 aa12.81□□□□□ -0.36
CIITA-204ENST00000570546 FBXL15Q9H469 300 aa12.81□□□□□ -0.36
CIITA-204ENST00000570546 SERF1AO75920 110 aa12.81□□□□□ -0.36
CIITA-204ENST00000570546 BSPH1Q075Z2 132 aa12.81□□□□□ -0.36
CIITA-204ENST00000570546 C5orf24Q7Z6I8 188 aa12.81□□□□□ -0.36
CIITA-204ENST00000570546 RNASE7Q9H1E1 156 aaKnown RBP12.81□□□□□ -0.36
CIITA-204ENST00000570546 FAM90A9PA6NNJ1 464 aa12.81□□□□□ -0.36
CIITA-204ENST00000570546 C1QL4Q86Z23 238 aa12.81□□□□□ -0.36
CIITA-204ENST00000570546 RPP21Q9H633 154 aaKnown RBP12.81□□□□□ -0.36
CIITA-204ENST00000570546 WDR83OSQ9Y284 106 aa12.81□□□□□ -0.36
CIITA-204ENST00000570546 ATXN7O15265 892 aaPredicted RBP12.8□□□□□ -0.36
CIITA-204ENST00000570546 DLX1P56177 255 aa12.8□□□□□ -0.36
CIITA-204ENST00000570546 Q0VFX4 171 aa12.8□□□□□ -0.36
CIITA-204ENST00000570546 RALGAPA1Q6GYQ0 2036 aa12.8□□□□□ -0.36
CIITA-204ENST00000570546 PLXNA2O75051 1894 aa12.8□□□□□ -0.36
CIITA-204ENST00000570546 HGFACQ04756 655 aa12.8□□□□□ -0.36
CIITA-204ENST00000570546 DNLZQ5SXM8 178 aa12.8□□□□□ -0.36
CIITA-204ENST00000570546 FOXL2NBQ6ZUU3 175 aa12.8□□□□□ -0.36
CIITA-204ENST00000570546 TCF24Q7RTU0 167 aa12.8□□□□□ -0.36
CIITA-204ENST00000570546 PARD6GQ9BYG4 376 aaPredicted RBP12.8□□□□□ -0.36
CIITA-204ENST00000570546 IGHV1-18A0A0C4DH31 117 aa12.8□□□□□ -0.36
CIITA-204ENST00000570546 C2orf83Q53S99 150 aa12.8□□□□□ -0.36
CIITA-204ENST00000570546 A0A1W2PS18 150 aa12.8□□□□□ -0.36
CIITA-204ENST00000570546 PGPEP1LA6NFU8 196 aa12.8□□□□□ -0.36
CIITA-204ENST00000570546 TMPRSS3P57727 454 aa12.8□□□□□ -0.36
CIITA-204ENST00000570546 TEX45Q8NA69 505 aa12.8□□□□□ -0.36
CIITA-204ENST00000570546 FAM57AQ8TBR7 257 aa12.8□□□□□ -0.36
CIITA-204ENST00000570546 HIST3H2BBQ8N257 126 aa12.79□□□□□ -0.36
CIITA-204ENST00000570546 LINC01560Q8TB33 94 aa12.79□□□□□ -0.36
CIITA-204ENST00000570546 TP53BP1Q12888 1972 aaPredicted RBP12.79□□□□□ -0.36
CIITA-204ENST00000570546 NUDT3O95989 172 aa12.79□□□□□ -0.36
CIITA-204ENST00000570546 IGKV1-5P01602 117 aa12.79□□□□□ -0.36
CIITA-204ENST00000570546 FABP2P12104 132 aa12.79□□□□□ -0.36
CIITA-204ENST00000570546 ZNF502Q8TBZ5 544 aa12.79□□□□□ -0.36
CIITA-204ENST00000570546 E9PLN8 166 aa12.79□□□□□ -0.36
CIITA-204ENST00000570546 TRBV24-1A0A075B6N3 115 aa12.79□□□□□ -0.36
CIITA-204ENST00000570546 SNCGO76070 127 aa12.79□□□□□ -0.36
CIITA-204ENST00000570546 EFNB3Q15768 340 aa12.79□□□□□ -0.36
CIITA-204ENST00000570546 TM4SF20Q53R12 229 aa12.79□□□□□ -0.36
CIITA-204ENST00000570546 SAPCD1Q5SSQ6 148 aa12.79□□□□□ -0.36
CIITA-204ENST00000570546 FAM19A2Q8N3H0 131 aa12.79□□□□□ -0.36
CIITA-204ENST00000570546 HIST1H2BLQ99880 126 aa12.79□□□□□ -0.36
CIITA-204ENST00000570546 PMCHL2Q9BQD1 86 aa12.79□□□□□ -0.36
CIITA-204ENST00000570546 PF4V1P10720 104 aa12.78□□□□□ -0.36
CIITA-204ENST00000570546 CCL3L1P16619 93 aa12.78□□□□□ -0.36
CIITA-204ENST00000570546 CSRP2Q16527 193 aa12.78□□□□□ -0.36
CIITA-204ENST00000570546 OCC1Q8TAD7 63 aa12.78□□□□□ -0.36
CIITA-204ENST00000570546 C17orf100A8MU93 164 aa12.78□□□□□ -0.36
CIITA-204ENST00000570546 B3GALT5-AS1P59052 145 aa12.78□□□□□ -0.36
CIITA-204ENST00000570546 GFI1BQ5VTD9 330 aa12.78□□□□□ -0.36
CIITA-204ENST00000570546 MBNL2Q5VZF2 373 aaKnown RBP12.78□□□□□ -0.36
CIITA-204ENST00000570546 ZNF600Q6ZNG1 722 aa12.78□□□□□ -0.36
CIITA-204ENST00000570546 C14orf144Q96I85 54 aa12.78□□□□□ -0.36
CIITA-204ENST00000570546 FOXA2Q9Y261 457 aaPredicted RBP12.78□□□□□ -0.36
CIITA-204ENST00000570546 SOX21Q9Y651 276 aaPredicted RBP12.78□□□□□ -0.36
CIITA-204ENST00000570546 ATP5G2Q06055 141 aa12.78□□□□□ -0.36
CIITA-204ENST00000570546 TMEM105Q8N8V8 129 aa12.78□□□□□ -0.36
CIITA-204ENST00000570546 GCSHP23434 173 aa12.78□□□□□ -0.36
CIITA-204ENST00000570546 RAB9AP51151 201 aa12.78□□□□□ -0.36
CIITA-204ENST00000570546 RAB37Q96AX2 223 aa12.78□□□□□ -0.36
CIITA-204ENST00000570546 Q9H3A6 140 aa12.78□□□□□ -0.36
CIITA-204ENST00000570546 S4R3C0 116 aa12.78□□□□□ -0.36
CIITA-204ENST00000570546 H3BVH4 76 aa12.77□□□□□ -0.36
CIITA-204ENST00000570546 IGHV3-23P01764 117 aa12.77□□□□□ -0.36
CIITA-204ENST00000570546 TFPI2P48307 235 aa12.77□□□□□ -0.37
CIITA-204ENST00000570546 GNG5P63218 68 aa12.77□□□□□ -0.37
CIITA-204ENST00000570546 VOPP1Q96AW1 172 aa12.77□□□□□ -0.37
CIITA-204ENST00000570546 MIEN1Q9BRT3 115 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms