RNA–Protein interactions for RNA: ENST00000568422.6

CLN3-231, Transcript of CLN3, battenin, human

TSL 5

Gene CLN3, Length 1,168 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-231	ENST00000568422	G6PC	P35575	357 aa		12.51	□□□□□ -0.41
CLN3-231	ENST00000568422	TAS2R20	P59543	309 aa		12.51	□□□□□ -0.41
CLN3-231	ENST00000568422	LPCAT3	Q6P1A2	487 aa		12.51	□□□□□ -0.41
CLN3-231	ENST00000568422	STPG3	Q8N7X2	389 aa		12.51	□□□□□ -0.41
CLN3-231	ENST00000568422	OR1P1	Q8NH06	330 aa		12.51	□□□□□ -0.41
CLN3-231	ENST00000568422	LINC00476	Q8WZB0	136 aa		12.51	□□□□□ -0.41
CLN3-231	ENST00000568422	CHRDL1	Q9BU40	450 aa		12.51	□□□□□ -0.41
CLN3-231	ENST00000568422	C20orf24	Q9BUV8	137 aa		12.51	□□□□□ -0.41
CLN3-231	ENST00000568422	ALMS1	Q8TCU4	4167 aa		12.5	□□□□□ -0.41
CLN3-231	ENST00000568422		A0A0J9YWU9	116 aa		12.5	□□□□□ -0.41
CLN3-231	ENST00000568422		K7EIM0	57 aa		12.5	□□□□□ -0.41
CLN3-231	ENST00000568422	PRSS3	P35030	304 aa		12.5	□□□□□ -0.41
CLN3-231	ENST00000568422	ADM	P35318	185 aa		12.5	□□□□□ -0.41
CLN3-231	ENST00000568422	CMC4	P56277	68 aa	Predicted RBP	12.5	□□□□□ -0.41
CLN3-231	ENST00000568422	REL	Q04864	619 aa	Predicted RBP	12.5	□□□□□ -0.41
CLN3-231	ENST00000568422		Q56UQ5	140 aa		12.5	□□□□□ -0.41
CLN3-231	ENST00000568422	LYG2	Q86SG7	212 aa		12.5	□□□□□ -0.41
CLN3-231	ENST00000568422	TMEM217	Q8N7C4	229 aa		12.5	□□□□□ -0.41
CLN3-231	ENST00000568422	SAMD12	Q8N8I0	201 aa		12.5	□□□□□ -0.41
CLN3-231	ENST00000568422	UBAC2	Q8NBM4	344 aa		12.5	□□□□□ -0.41
CLN3-231	ENST00000568422	GALNT14	Q96FL9	552 aa		12.5	□□□□□ -0.41
CLN3-231	ENST00000568422	TMEM14B	Q9NUH8	114 aa		12.5	□□□□□ -0.41
CLN3-231	ENST00000568422	UBQLN2	Q9UHD9	624 aa		12.5	□□□□□ -0.41
CLN3-231	ENST00000568422	NSG2	Q9Y328	171 aa		12.5	□□□□□ -0.41
CLN3-231	ENST00000568422		F8W735	103 aa	Predicted RBP	12.49	□□□□□ -0.41
CLN3-231	ENST00000568422	NUPL2	O15504	423 aa	Known RBP	12.49	□□□□□ -0.41
CLN3-231	ENST00000568422	CTSG	P08311	255 aa		12.49	□□□□□ -0.41
CLN3-231	ENST00000568422	RPS19	P39019	145 aa	Known RBP	12.49	□□□□□ -0.41
CLN3-231	ENST00000568422	DEFB135	Q30KP9	77 aa		12.49	□□□□□ -0.41
CLN3-231	ENST00000568422	ODF3L2	Q3SX64	289 aa		12.49	□□□□□ -0.41
CLN3-231	ENST00000568422	LYSMD2	Q8IV50	215 aa		12.49	□□□□□ -0.41
CLN3-231	ENST00000568422	RNF183	Q96D59	192 aa		12.49	□□□□□ -0.41
CLN3-231	ENST00000568422	TXN2	Q99757	166 aa		12.49	□□□□□ -0.41
CLN3-231	ENST00000568422	C6orf62	Q9GZU0	229 aa	Predicted RBP	12.49	□□□□□ -0.41
CLN3-231	ENST00000568422	FXYD6	Q9H0Q3	95 aa		12.49	□□□□□ -0.41
CLN3-231	ENST00000568422	SMPX	Q9UHP9	88 aa		12.49	□□□□□ -0.41
CLN3-231	ENST00000568422	IGHV3-21	A0A0B4J1V1	117 aa		12.48	□□□□□ -0.41
CLN3-231	ENST00000568422	C15orf61	A6NNL5	157 aa		12.48	□□□□□ -0.41
CLN3-231	ENST00000568422	CTSD	P07339	412 aa	Predicted RBP	12.48	□□□□□ -0.41
CLN3-231	ENST00000568422	FCGR2B	P31994	310 aa	Predicted RBP	12.48	□□□□□ -0.41
CLN3-231	ENST00000568422	HRH1	P35367	487 aa		12.48	□□□□□ -0.41
CLN3-231	ENST00000568422	MFAP4	P55083	255 aa		12.48	□□□□□ -0.41
CLN3-231	ENST00000568422	PMS2P11	Q13670	270 aa		12.48	□□□□□ -0.41
CLN3-231	ENST00000568422	CEMP1	Q6PRD7	247 aa	Predicted RBP	12.48	□□□□□ -0.41
CLN3-231	ENST00000568422	OR10C1	Q96KK4	312 aa		12.48	□□□□□ -0.41
CLN3-231	ENST00000568422	MAP6D1	Q9H9H5	199 aa		12.48	□□□□□ -0.41
CLN3-231	ENST00000568422	KLK5	Q9Y337	293 aa	Predicted RBP	12.48	□□□□□ -0.41
CLN3-231	ENST00000568422	SMIM31	A0A1B0GVY4	71 aa		12.47	□□□□□ -0.41
CLN3-231	ENST00000568422	LY6G6C	O95867	125 aa		12.47	□□□□□ -0.41
CLN3-231	ENST00000568422	TSPAN5	P62079	268 aa		12.47	□□□□□ -0.41
CLN3-231	ENST00000568422	ZNF114	Q8NC26	417 aa		12.47	□□□□□ -0.41
CLN3-231	ENST00000568422	OR4A16	Q8NH70	328 aa		12.47	□□□□□ -0.41
CLN3-231	ENST00000568422	CMTM3	Q96MX0	182 aa		12.47	□□□□□ -0.41
CLN3-231	ENST00000568422	VCX3A	Q9NNX9	186 aa		12.47	□□□□□ -0.41
CLN3-231	ENST00000568422	IGHV3OR16-8	A0A075B7F1	116 aa		12.46	□□□□□ -0.41
CLN3-231	ENST00000568422	IGHV7-4-1	A0A0J9YVY3	117 aa		12.46	□□□□□ -0.41
CLN3-231	ENST00000568422	DBX1	A6NMT0	343 aa		12.46	□□□□□ -0.41
CLN3-231	ENST00000568422	CHEK1	O14757	476 aa		12.46	□□□□□ -0.41
CLN3-231	ENST00000568422	ZNF207	O43670	478 aa	Known RBP	12.46	□□□□□ -0.41
CLN3-231	ENST00000568422	CD5	P06127	495 aa		12.46	□□□□□ -0.41
CLN3-231	ENST00000568422	HLA-DMA	P28067	261 aa		12.46	□□□□□ -0.41
CLN3-231	ENST00000568422	TGFBR1	P36897	503 aa		12.46	□□□□□ -0.41
CLN3-231	ENST00000568422	PHLDA2	Q53GA4	152 aa		12.46	□□□□□ -0.41
CLN3-231	ENST00000568422	H2BFWT	Q7Z2G1	175 aa		12.46	□□□□□ -0.41
CLN3-231	ENST00000568422	TMEM116	Q8NCL8	245 aa		12.46	□□□□□ -0.41
CLN3-231	ENST00000568422	GPX8	Q8TED1	209 aa		12.46	□□□□□ -0.41
CLN3-231	ENST00000568422	SLC25A46	Q96AG3	418 aa		12.46	□□□□□ -0.41
CLN3-231	ENST00000568422	SEC22A	Q96IW7	307 aa		12.46	□□□□□ -0.41
CLN3-231	ENST00000568422	RNF2	Q99496	336 aa		12.46	□□□□□ -0.41
CLN3-231	ENST00000568422	RHPN1-AS1	Q9BWJ2	59 aa		12.46	□□□□□ -0.41
CLN3-231	ENST00000568422	SCPEP1	Q9HB40	452 aa		12.46	□□□□□ -0.41
CLN3-231	ENST00000568422		I3L2K1	104 aa		12.45	□□□□□ -0.42
CLN3-231	ENST00000568422	YIF1A	O95070	293 aa		12.45	□□□□□ -0.42
CLN3-231	ENST00000568422	APOA1	P02647	267 aa		12.45	□□□□□ -0.42
CLN3-231	ENST00000568422	RPL35A	P18077	110 aa	Known RBP	12.45	□□□□□ -0.42
CLN3-231	ENST00000568422	UCP3	P55916	312 aa		12.45	□□□□□ -0.42
CLN3-231	ENST00000568422	PRCD	Q00LT1	54 aa		12.45	□□□□□ -0.42
CLN3-231	ENST00000568422	EWSR1	Q01844	656 aa	Known RBP eCLIP	12.45	□□□□□ -0.42
CLN3-231	ENST00000568422	TBC1D26	Q86UD7	250 aa		12.45	□□□□□ -0.42
CLN3-231	ENST00000568422	YIPF6	Q96EC8	236 aa		12.45	□□□□□ -0.42
CLN3-231	ENST00000568422	MISP3	Q96FF7	219 aa		12.45	□□□□□ -0.42
CLN3-231	ENST00000568422	NXF2	Q9GZY0	626 aa	Known RBP	12.45	□□□□□ -0.42
CLN3-231	ENST00000568422	TRAV14DV4	A0A0A6YYC5	116 aa		12.44	□□□□□ -0.42
CLN3-231	ENST00000568422	ERH	P84090	104 aa	Known RBP	12.44	□□□□□ -0.42
CLN3-231	ENST00000568422	GATAD1	Q8WUU5	269 aa		12.44	□□□□□ -0.42
CLN3-231	ENST00000568422	CSTL1	Q9H114	145 aa		12.44	□□□□□ -0.42
CLN3-231	ENST00000568422		A0A087WXM4	84 aa		12.43	□□□□□ -0.42
CLN3-231	ENST00000568422	MPTX1	A8MV57	137 aa		12.43	□□□□□ -0.42
CLN3-231	ENST00000568422	GNG7	O60262	68 aa		12.43	□□□□□ -0.42
CLN3-231	ENST00000568422	MT-CO2	P00403	227 aa		12.43	□□□□□ -0.42
CLN3-231	ENST00000568422	EIF4E	P06730	217 aa	Known RBP	12.43	□□□□□ -0.42
CLN3-231	ENST00000568422	RCVRN	P35243	200 aa		12.43	□□□□□ -0.42
CLN3-231	ENST00000568422	HSPE1	P61604	102 aa	Known RBP	12.43	□□□□□ -0.42
CLN3-231	ENST00000568422	LSM3	P62310	102 aa	Known RBP	12.43	□□□□□ -0.42
CLN3-231	ENST00000568422	PAFAH1B2	P68402	229 aa		12.43	□□□□□ -0.42
CLN3-231	ENST00000568422	APRG1	Q8IVJ8	170 aa		12.43	□□□□□ -0.42
CLN3-231	ENST00000568422	ZNF414	Q96IQ9	312 aa		12.43	□□□□□ -0.42
CLN3-231	ENST00000568422	GINS3	Q9BRX5	216 aa		12.43	□□□□□ -0.42
CLN3-231	ENST00000568422	FAM90A2P	Q658T7	463 aa		12.42	□□□□□ -0.42
CLN3-231	ENST00000568422	COMMD3	Q9UBI1	195 aa		12.42	□□□□□ -0.42

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