RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 ADIRFQ15847 76 aa16.39■□□□□ 0.21
CLN3-230ENST00000568076 C10orf55Q5SWW7 151 aa16.39■□□□□ 0.21
CLN3-230ENST00000568076 TMEM144Q7Z5S9 345 aa16.39■□□□□ 0.21
CLN3-230ENST00000568076 OR51G1Q8NGK1 321 aa16.39■□□□□ 0.21
CLN3-230ENST00000568076 OR4A5Q8NH83 315 aa16.39■□□□□ 0.21
CLN3-230ENST00000568076 ZNF430Q9H8G1 570 aaPredicted RBP16.39■□□□□ 0.21
CLN3-230ENST00000568076 NBASA2RRP1 2371 aa16.39■□□□□ 0.21
CLN3-230ENST00000568076 CLDN34H7C241 214 aa16.38■□□□□ 0.21
CLN3-230ENST00000568076 LY6HO94772 140 aa16.38■□□□□ 0.21
CLN3-230ENST00000568076 RAB31Q13636 194 aa16.38■□□□□ 0.21
CLN3-230ENST00000568076 GAMTQ14353 236 aa16.38■□□□□ 0.21
CLN3-230ENST00000568076 MRGPRG-AS1Q2M3A8 158 aa16.38■□□□□ 0.21
CLN3-230ENST00000568076 VSTM2AQ8TAG5 236 aa16.38■□□□□ 0.21
CLN3-230ENST00000568076 TPSG1Q9NRR2 321 aa16.38■□□□□ 0.21
CLN3-230ENST00000568076 IGHV3-72A0A0B4J1Y9 119 aa16.38■□□□□ 0.21
CLN3-230ENST00000568076 INS-IGF2F8WCM5 200 aa16.38■□□□□ 0.21
CLN3-230ENST00000568076 IGLV1-47P01700 117 aa16.38■□□□□ 0.21
CLN3-230ENST00000568076 SLC45A2Q9UMX9 530 aa16.38■□□□□ 0.21
CLN3-230ENST00000568076 CXorf1O96002 111 aa16.37■□□□□ 0.21
CLN3-230ENST00000568076 GNB1P62873 340 aa16.37■□□□□ 0.21
CLN3-230ENST00000568076 WT1-ASQ06250 92 aa16.37■□□□□ 0.21
CLN3-230ENST00000568076 LY6DQ14210 128 aa16.37■□□□□ 0.21
CLN3-230ENST00000568076 CST9LP1Q5W188 147 aa16.37■□□□□ 0.21
CLN3-230ENST00000568076 SLC25A17O43808 307 aa16.37■□□□□ 0.21
CLN3-230ENST00000568076 MC5RP33032 325 aa16.37■□□□□ 0.21
CLN3-230ENST00000568076 CD69Q07108 199 aa16.37■□□□□ 0.21
CLN3-230ENST00000568076 KIAA0141Q14154 515 aaPredicted RBP16.37■□□□□ 0.21
CLN3-230ENST00000568076 HLA-DRB5Q30154 266 aa16.37■□□□□ 0.21
CLN3-230ENST00000568076 CTDSP1Q9GZU7 261 aa16.37■□□□□ 0.21
CLN3-230ENST00000568076 MALRD1Q5VYJ5 2156 aa16.36■□□□□ 0.21
CLN3-230ENST00000568076 ABCA4P78363 2273 aa16.36■□□□□ 0.21
CLN3-230ENST00000568076 HRNRQ86YZ3 2850 aaPredicted RBP16.36■□□□□ 0.21
CLN3-230ENST00000568076 FOXH1O75593 365 aa16.36■□□□□ 0.21
CLN3-230ENST00000568076 IGHV2-5P01817 119 aa16.36■□□□□ 0.21
CLN3-230ENST00000568076 S100A6P06703 90 aa16.36■□□□□ 0.21
CLN3-230ENST00000568076 IL3RAP26951 378 aa16.36■□□□□ 0.21
CLN3-230ENST00000568076 RHOBP62745 196 aa16.36■□□□□ 0.21
CLN3-230ENST00000568076 ERHP84090 104 aaKnown RBP16.36■□□□□ 0.21
CLN3-230ENST00000568076 TNFRSF14Q92956 283 aa16.36■□□□□ 0.21
CLN3-230ENST00000568076 PPIAL4CA0A0B4J2A2 164 aa16.35■□□□□ 0.21
CLN3-230ENST00000568076 UBE2CO00762 179 aa16.35■□□□□ 0.21
CLN3-230ENST00000568076 PDE6DO43924 150 aa16.35■□□□□ 0.21
CLN3-230ENST00000568076 PPIAL4GP0DN37 164 aa16.35■□□□□ 0.21
CLN3-230ENST00000568076 GATA2P23769 480 aaPredicted RBP16.35■□□□□ 0.21
CLN3-230ENST00000568076 C16orf82Q7Z2V1 217 aa16.35■□□□□ 0.21
CLN3-230ENST00000568076 A0A1W2PN81 502 aa16.35■□□□□ 0.21
CLN3-230ENST00000568076 DLL1O00548 723 aa16.35■□□□□ 0.21
CLN3-230ENST00000568076 ENSAO43768 121 aaKnown RBP16.35■□□□□ 0.21
CLN3-230ENST00000568076 GCHFRP30047 84 aa16.35■□□□□ 0.21
CLN3-230ENST00000568076 OR10J1P30954 320 aa16.35■□□□□ 0.21
CLN3-230ENST00000568076 CHRNA7P36544 502 aa16.35■□□□□ 0.21
CLN3-230ENST00000568076 C11orf71Q6IPW1 123 aa16.35■□□□□ 0.21
CLN3-230ENST00000568076 C8orf46Q8TAG6 207 aa16.35■□□□□ 0.21
CLN3-230ENST00000568076 DERL1Q9BUN8 251 aa16.35■□□□□ 0.21
CLN3-230ENST00000568076 CHD8Q9HCK8 2581 aa16.34■□□□□ 0.21
CLN3-230ENST00000568076 SOD3P08294 240 aa16.34■□□□□ 0.21
CLN3-230ENST00000568076 VMA21Q3ZAQ7 101 aa16.34■□□□□ 0.21
CLN3-230ENST00000568076 CBLN4Q9NTU7 201 aa16.34■□□□□ 0.21
CLN3-230ENST00000568076 YTHDF2Q9Y5A9 579 aaKnown RBP16.34■□□□□ 0.21
CLN3-230ENST00000568076 TPRP12270 2363 aaKnown RBP16.34■□□□□ 0.21
CLN3-230ENST00000568076 BUB1B-PAK6H3BSN5 160 aa16.33■□□□□ 0.21
CLN3-230ENST00000568076 ACTL6BO94805 426 aa16.33■□□□□ 0.21
CLN3-230ENST00000568076 LGALS7P47929 136 aa16.33■□□□□ 0.21
CLN3-230ENST00000568076 PRRX1P54821 245 aa16.33■□□□□ 0.21
CLN3-230ENST00000568076 FAM78BQ5VT40 261 aa16.33■□□□□ 0.21
CLN3-230ENST00000568076 MIR17HGQ75NE6 70 aa16.33■□□□□ 0.21
CLN3-230ENST00000568076 SLC16A13Q7RTY0 426 aa16.33■□□□□ 0.21
CLN3-230ENST00000568076 OR2T6Q8NHC8 308 aa16.33■□□□□ 0.21
CLN3-230ENST00000568076 FAM210BQ96KR6 192 aa16.33■□□□□ 0.21
CLN3-230ENST00000568076 CLEC7AQ9BXN2 247 aa16.33■□□□□ 0.21
CLN3-230ENST00000568076 RAB1BQ9H0U4 201 aa16.33■□□□□ 0.21
CLN3-230ENST00000568076 NDUFB4O95168 129 aa16.33■□□□□ 0.2
CLN3-230ENST00000568076 CNTFRP26992 372 aa16.33■□□□□ 0.2
CLN3-230ENST00000568076 FABP9Q0Z7S8 132 aa16.33■□□□□ 0.2
CLN3-230ENST00000568076 OR8B3Q8NGG8 313 aa16.33■□□□□ 0.2
CLN3-230ENST00000568076 OR4P4Q8NGL7 312 aa16.33■□□□□ 0.2
CLN3-230ENST00000568076 OR8B2Q96RD0 313 aa16.33■□□□□ 0.2
CLN3-230ENST00000568076 FNDC4Q9H6D8 234 aaPredicted RBP16.33■□□□□ 0.2
CLN3-230ENST00000568076 IGHV1-3A0A0C4DH29 117 aa16.32■□□□□ 0.2
CLN3-230ENST00000568076 C22orf46C9J442 243 aa16.32■□□□□ 0.2
CLN3-230ENST00000568076 F6UZH7 168 aa16.32■□□□□ 0.2
CLN3-230ENST00000568076 RBP4P02753 201 aa16.32■□□□□ 0.2
CLN3-230ENST00000568076 COX7A1P24310 79 aa16.32■□□□□ 0.2
CLN3-230ENST00000568076 BEND2Q8NDZ0 799 aa16.32■□□□□ 0.2
CLN3-230ENST00000568076 CACNG8Q8WXS5 425 aa16.32■□□□□ 0.2
CLN3-230ENST00000568076 METTL1Q9UBP6 276 aaKnown RBP16.32■□□□□ 0.2
CLN3-230ENST00000568076 A0A1W2PPI3 338 aa16.31■□□□□ 0.2
CLN3-230ENST00000568076 VENTXO95231 258 aa16.31■□□□□ 0.2
CLN3-230ENST00000568076 GPX4P36969 197 aaPredicted RBP16.31■□□□□ 0.2
CLN3-230ENST00000568076 LY6G5BQ8NDX9 201 aa16.31■□□□□ 0.2
CLN3-230ENST00000568076 NANPQ8TBE9 248 aa16.31■□□□□ 0.2
CLN3-230ENST00000568076 PRORYQ9H606 182 aa16.31■□□□□ 0.2
CLN3-230ENST00000568076 MIOXQ9UGB7 285 aa16.31■□□□□ 0.2
CLN3-230ENST00000568076 FUT9Q9Y231 359 aa16.31■□□□□ 0.2
CLN3-230ENST00000568076 COL6A6A6NMZ7 2263 aa16.31■□□□□ 0.2
CLN3-230ENST00000568076 NCOR2Q9Y618 2525 aa16.31■□□□□ 0.2
CLN3-230ENST00000568076 TRBV24-1A0A075B6N3 115 aa16.31■□□□□ 0.2
CLN3-230ENST00000568076 CRYGBP07316 175 aa16.31■□□□□ 0.2
CLN3-230ENST00000568076 PFN1P07737 140 aaKnown RBP16.31■□□□□ 0.2
CLN3-230ENST00000568076 SSBP2P81877 361 aaPredicted RBP16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms