RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 ASCL2Q99929 193 aa14.19□□□□□ -0.14
CLN3-227ENST00000567495 PRRT1Q99946 306 aa14.19□□□□□ -0.14
CLN3-227ENST00000567495 NXF2Q9GZY0 626 aaKnown RBP14.19□□□□□ -0.14
CLN3-227ENST00000567495 PALMDQ9NP74 551 aa14.19□□□□□ -0.14
CLN3-227ENST00000567495 GAR1Q9NY12 217 aaKnown RBP14.19□□□□□ -0.14
CLN3-227ENST00000567495 C14orf166Q9Y224 244 aaKnown RBP14.19□□□□□ -0.14
CLN3-227ENST00000567495 DNAH9Q9NYC9 4486 aa14.19□□□□□ -0.14
CLN3-227ENST00000567495 DBX1A6NMT0 343 aa14.18□□□□□ -0.14
CLN3-227ENST00000567495 GPR183P32249 361 aa14.18□□□□□ -0.14
CLN3-227ENST00000567495 AKR1C2P52895 323 aa14.18□□□□□ -0.14
CLN3-227ENST00000567495 PRCDQ00LT1 54 aa14.18□□□□□ -0.14
CLN3-227ENST00000567495 CD300EQ496F6 205 aaPredicted RBP14.18□□□□□ -0.14
CLN3-227ENST00000567495 ADAMTSL5Q6ZMM2 481 aa14.18□□□□□ -0.14
CLN3-227ENST00000567495 MARCH1Q8TCQ1 289 aa14.18□□□□□ -0.14
CLN3-227ENST00000567495 TP53RKQ96S44 253 aa14.18□□□□□ -0.14
CLN3-227ENST00000567495 SOSTQ9BQB4 213 aa14.18□□□□□ -0.14
CLN3-227ENST00000567495 THAP7Q9BT49 309 aaPredicted RBP14.18□□□□□ -0.14
CLN3-227ENST00000567495 CEPT1Q9Y6K0 416 aa14.18□□□□□ -0.14
CLN3-227ENST00000567495 FABP12A6NFH5 140 aa14.17□□□□□ -0.14
CLN3-227ENST00000567495 TGOLN2O43493 480 aa14.17□□□□□ -0.14
CLN3-227ENST00000567495 IGHV4-30-4P0DP06 118 aa14.17□□□□□ -0.14
CLN3-227ENST00000567495 CBLN1P23435 193 aa14.17□□□□□ -0.14
CLN3-227ENST00000567495 UCP1P25874 307 aa14.17□□□□□ -0.14
CLN3-227ENST00000567495 TNFSF8P32971 234 aa14.17□□□□□ -0.14
CLN3-227ENST00000567495 ELLP55199 621 aaPredicted RBP14.17□□□□□ -0.14
CLN3-227ENST00000567495 ERHP84090 104 aaKnown RBP14.17□□□□□ -0.14
CLN3-227ENST00000567495 TRIM16LQ309B1 348 aa14.17□□□□□ -0.14
CLN3-227ENST00000567495 OR2C3Q8N628 320 aa14.17□□□□□ -0.14
CLN3-227ENST00000567495 ZNF114Q8NC26 417 aa14.17□□□□□ -0.14
CLN3-227ENST00000567495 RRNAD1Q96FB5 475 aaKnown RBP14.17□□□□□ -0.14
CLN3-227ENST00000567495 BSCL2Q96G97 398 aaPredicted RBP14.17□□□□□ -0.14
CLN3-227ENST00000567495 SCGB3A2Q96PL1 93 aa14.17□□□□□ -0.14
CLN3-227ENST00000567495 PLEKHA3Q9HB20 300 aa14.17□□□□□ -0.14
CLN3-227ENST00000567495 C21orf62Q9NYP8 219 aa14.17□□□□□ -0.14
CLN3-227ENST00000567495 UFC1Q9Y3C8 167 aa14.17□□□□□ -0.14
CLN3-227ENST00000567495 P0C879 139 aa14.16□□□□□ -0.14
CLN3-227ENST00000567495 MFAP2P55001 183 aa14.16□□□□□ -0.14
CLN3-227ENST00000567495 SBSPONQ8IVN8 264 aa14.16□□□□□ -0.14
CLN3-227ENST00000567495 OR4C16Q8NGL9 310 aa14.16□□□□□ -0.14
CLN3-227ENST00000567495 SCARB1Q8WTV0 552 aa14.16□□□□□ -0.14
CLN3-227ENST00000567495 ZC4H2Q9NQZ6 224 aa14.16□□□□□ -0.14
CLN3-227ENST00000567495 C19orf73Q9NVV2 129 aa14.16□□□□□ -0.14
CLN3-227ENST00000567495 SLC2A8Q9NY64 477 aa14.16□□□□□ -0.14
CLN3-227ENST00000567495 SCP2D1Q9UJQ7 156 aa14.16□□□□□ -0.14
CLN3-227ENST00000567495 TEX13DA0A0J9YY54 714 aaPredicted RBP14.15□□□□□ -0.14
CLN3-227ENST00000567495 ANKRD20A5PA0PJZ0 165 aa14.15□□□□□ -0.14
CLN3-227ENST00000567495 TMEM213A2RRL7 107 aa14.15□□□□□ -0.14
CLN3-227ENST00000567495 IZUMO1RA6ND01 250 aa14.15□□□□□ -0.14
CLN3-227ENST00000567495 IGKV1-5P01602 117 aa14.15□□□□□ -0.14
CLN3-227ENST00000567495 FAM219AQ8IW50 185 aa14.15□□□□□ -0.14
CLN3-227ENST00000567495 PDCD10Q9BUL8 212 aa14.15□□□□□ -0.14
CLN3-227ENST00000567495 ZNF436Q9C0F3 470 aaPredicted RBP14.15□□□□□ -0.14
CLN3-227ENST00000567495 TMEM222Q9H0R3 208 aa14.15□□□□□ -0.14
CLN3-227ENST00000567495 ZMAT4Q9H898 229 aa14.15□□□□□ -0.14
CLN3-227ENST00000567495 TENM3Q9P273 2699 aa14.15□□□□□ -0.14
CLN3-227ENST00000567495 A0A0B4J293 547 aa14.14□□□□□ -0.15
CLN3-227ENST00000567495 CCDC160A6NGH7 325 aa14.14□□□□□ -0.15
CLN3-227ENST00000567495 INS-IGF2F8WCM5 200 aa14.14□□□□□ -0.15
CLN3-227ENST00000567495 K7EIM0 57 aa14.14□□□□□ -0.15
CLN3-227ENST00000567495 DHODHQ02127 395 aa14.14□□□□□ -0.15
CLN3-227ENST00000567495 SP6Q3SY56 376 aa14.14□□□□□ -0.15
CLN3-227ENST00000567495 ZNF57Q68EA5 555 aaPredicted RBP14.14□□□□□ -0.15
CLN3-227ENST00000567495 FAAP20Q6NZ36 180 aa14.14□□□□□ -0.15
CLN3-227ENST00000567495 UXS1Q8NBZ7 420 aa14.14□□□□□ -0.15
CLN3-227ENST00000567495 RNASE11Q8TAA1 199 aaKnown RBP14.14□□□□□ -0.15
CLN3-227ENST00000567495 TXN2Q99757 166 aa14.14□□□□□ -0.15
CLN3-227ENST00000567495 RTBDNQ9BSG5 229 aaPredicted RBP14.14□□□□□ -0.15
CLN3-227ENST00000567495 TUBA4BQ9H853 241 aa14.14□□□□□ -0.15
CLN3-227ENST00000567495 MRPL27Q9P0M9 148 aaKnown RBP14.14□□□□□ -0.15
CLN3-227ENST00000567495 GPR132Q9UNW8 380 aa14.14□□□□□ -0.15
CLN3-227ENST00000567495 STAB2Q8WWQ8 2551 aa14.13□□□□□ -0.15
CLN3-227ENST00000567495 OR2T8A6NH00 312 aa14.13□□□□□ -0.15
CLN3-227ENST00000567495 ZNF785A8K8V0 405 aa14.13□□□□□ -0.15
CLN3-227ENST00000567495 ZNF701M0R085 212 aaPredicted RBP14.13□□□□□ -0.15
CLN3-227ENST00000567495 CDS2O95674 445 aa14.13□□□□□ -0.15
CLN3-227ENST00000567495 IFNA17P01571 189 aa14.13□□□□□ -0.15
CLN3-227ENST00000567495 C8orf88P0DMB2 117 aa14.13□□□□□ -0.15
CLN3-227ENST00000567495 FCGR2BP31994 310 aaPredicted RBP14.13□□□□□ -0.15
CLN3-227ENST00000567495 S100A5P33763 92 aa14.13□□□□□ -0.15
CLN3-227ENST00000567495 SNCAP37840 140 aa14.13□□□□□ -0.15
CLN3-227ENST00000567495 UNQ9165/PRO28630Q6UXU0 137 aa14.13□□□□□ -0.15
CLN3-227ENST00000567495 SLC35G3Q8N808 338 aa14.13□□□□□ -0.15
CLN3-227ENST00000567495 OR51S1Q8NGJ8 323 aa14.13□□□□□ -0.15
CLN3-227ENST00000567495 C5orf66Q9H5L9 145 aa14.13□□□□□ -0.15
CLN3-227ENST00000567495 NAA60Q9H7X0 242 aa14.13□□□□□ -0.15
CLN3-227ENST00000567495 TRAV25A0A0B4J276 109 aa14.12□□□□□ -0.15
CLN3-227ENST00000567495 NDUFA4O00483 81 aa14.12□□□□□ -0.15
CLN3-227ENST00000567495 FAUP35544 74 aaKnown RBP14.12□□□□□ -0.15
CLN3-227ENST00000567495 MFAP4P55083 255 aa14.12□□□□□ -0.15
CLN3-227ENST00000567495 AP3S2P59780 193 aa14.12□□□□□ -0.15
CLN3-227ENST00000567495 GUCA2BQ16661 112 aa14.12□□□□□ -0.15
CLN3-227ENST00000567495 IZUMO4Q1ZYL8 232 aa14.12□□□□□ -0.15
CLN3-227ENST00000567495 ANKRD55Q3KP44 614 aa14.12□□□□□ -0.15
CLN3-227ENST00000567495 TM4SF20Q53R12 229 aa14.12□□□□□ -0.15
CLN3-227ENST00000567495 Q56UQ5 140 aa14.12□□□□□ -0.15
CLN3-227ENST00000567495 GLYATL2Q8WU03 294 aa14.12□□□□□ -0.15
CLN3-227ENST00000567495 TMEM190Q8WZ59 177 aa14.12□□□□□ -0.15
CLN3-227ENST00000567495 RBPMSQ93062 196 aaKnown RBP14.12□□□□□ -0.15
CLN3-227ENST00000567495 MISP3Q96FF7 219 aa14.12□□□□□ -0.15
CLN3-227ENST00000567495 DAZ1Q9NQZ3 744 aaKnown RBP14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms