RNA–Protein interactions for RNA: ENST00000566808.2

CDH3-205, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 573 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-205ENST00000566808 CLEC5AQ9NY25 188 aa12.01□□□□□ -0.49
CDH3-205ENST00000566808 AK6Q9Y3D8 172 aaKnown RBP12.01□□□□□ -0.49
CDH3-205ENST00000566808 TRAV3A0A0B4J244 114 aa12□□□□□ -0.49
CDH3-205ENST00000566808 TRAPPC2P0DI81 140 aa12□□□□□ -0.49
CDH3-205ENST00000566808 TRAPPC2BP0DI82 140 aa12□□□□□ -0.49
CDH3-205ENST00000566808 FAM3BP58499 235 aaPredicted RBP12□□□□□ -0.49
CDH3-205ENST00000566808 AHSA2Q719I0 299 aa12□□□□□ -0.49
CDH3-205ENST00000566808 SPAG16Q8N0X2 631 aa12□□□□□ -0.49
CDH3-205ENST00000566808 ST8SIA2Q92186 375 aa12□□□□□ -0.49
CDH3-205ENST00000566808 LSM10Q969L4 123 aaKnown RBP12□□□□□ -0.49
CDH3-205ENST00000566808 VSIRQ9H7M9 311 aa12□□□□□ -0.49
CDH3-205ENST00000566808 EPM2AB3EWF7 344 aa11.99□□□□□ -0.49
CDH3-205ENST00000566808 NQO2P16083 231 aa11.99□□□□□ -0.49
CDH3-205ENST00000566808 RPL11P62913 178 aaKnown RBP11.99□□□□□ -0.49
CDH3-205ENST00000566808 DUSP18Q8NEJ0 188 aa11.99□□□□□ -0.49
CDH3-205ENST00000566808 GRAMD2BQ96HH9 432 aa11.99□□□□□ -0.49
CDH3-205ENST00000566808 GPHA2Q96T91 129 aa11.99□□□□□ -0.49
CDH3-205ENST00000566808 TMEM140Q9NV12 185 aa11.99□□□□□ -0.49
CDH3-205ENST00000566808 RABAC1Q9UI14 185 aa11.99□□□□□ -0.49
CDH3-205ENST00000566808 ARL6IP5O75915 188 aa11.98□□□□□ -0.49
CDH3-205ENST00000566808 MSMO1Q15800 293 aa11.98□□□□□ -0.49
CDH3-205ENST00000566808 UBE2UQ5VVX9 321 aa11.98□□□□□ -0.49
CDH3-205ENST00000566808 C6orf223Q8N319 242 aa11.98□□□□□ -0.49
CDH3-205ENST00000566808 OR1L8Q8NGR8 309 aa11.98□□□□□ -0.49
CDH3-205ENST00000566808 MND1Q9BWT6 205 aa11.98□□□□□ -0.49
CDH3-205ENST00000566808 NXF2Q9GZY0 626 aaKnown RBP11.98□□□□□ -0.49
CDH3-205ENST00000566808 PSORS1C1Q9UIG5 152 aa11.98□□□□□ -0.49
CDH3-205ENST00000566808 FLG2Q5D862 2391 aaPredicted RBP11.97□□□□□ -0.49
CDH3-205ENST00000566808 KNCNA6PVL3 124 aa11.97□□□□□ -0.49
CDH3-205ENST00000566808 ATP5HO75947 161 aa11.97□□□□□ -0.49
CDH3-205ENST00000566808 HPRT1P00492 218 aa11.97□□□□□ -0.49
CDH3-205ENST00000566808 SPART-AS1P0CW21 52 aa11.97□□□□□ -0.49
CDH3-205ENST00000566808 DMBX1Q8NFW5 382 aa11.97□□□□□ -0.49
CDH3-205ENST00000566808 C1QTNF4Q9BXJ3 329 aa11.97□□□□□ -0.49
CDH3-205ENST00000566808 DCSTAMPQ9H295 470 aa11.97□□□□□ -0.49
CDH3-205ENST00000566808 TMEM231Q9H6L2 316 aa11.97□□□□□ -0.49
CDH3-205ENST00000566808 TNFSF12O43508 249 aa11.96□□□□□ -0.49
CDH3-205ENST00000566808 INAFM2P0DMQ5 153 aa11.96□□□□□ -0.49
CDH3-205ENST00000566808 CATR1Q13166 79 aa11.96□□□□□ -0.49
CDH3-205ENST00000566808 ARL6IP1Q15041 203 aa11.96□□□□□ -0.49
CDH3-205ENST00000566808 ACTL10Q5JWF8 245 aa11.96□□□□□ -0.49
CDH3-205ENST00000566808 CNIH2Q6PI25 160 aa11.96□□□□□ -0.49
CDH3-205ENST00000566808 SPATA12Q7Z6I5 190 aa11.96□□□□□ -0.49
CDH3-205ENST00000566808 CYGBQ8WWM9 190 aa11.96□□□□□ -0.49
CDH3-205ENST00000566808 TXN2Q99757 166 aa11.96□□□□□ -0.49
CDH3-205ENST00000566808 NDUFA4L2Q9NRX3 87 aa11.96□□□□□ -0.49
CDH3-205ENST00000566808 V9GY05 133 aa11.96□□□□□ -0.49
CDH3-205ENST00000566808 TEX48A0A1B0GUV7 120 aa11.95□□□□□ -0.5
CDH3-205ENST00000566808 TMEM189A5PLL7 270 aa11.95□□□□□ -0.5
CDH3-205ENST00000566808 K7EQG2 157 aa11.95□□□□□ -0.5
CDH3-205ENST00000566808 APOHP02749 345 aaPredicted RBP11.95□□□□□ -0.5
CDH3-205ENST00000566808 ZNF688P0C7X2 276 aa11.95□□□□□ -0.5
CDH3-205ENST00000566808 RAB6AP20340 208 aa11.95□□□□□ -0.5
CDH3-205ENST00000566808 MFAP4P55083 255 aa11.95□□□□□ -0.5
CDH3-205ENST00000566808 HES5Q5TA89 166 aa11.95□□□□□ -0.5
CDH3-205ENST00000566808 LILRB2Q8N423 598 aa11.95□□□□□ -0.5
CDH3-205ENST00000566808 HINT2Q9BX68 163 aa11.95□□□□□ -0.5
CDH3-205ENST00000566808 PLEKHA2Q9HB19 425 aa11.95□□□□□ -0.5
CDH3-205ENST00000566808 COMMD9Q9P000 198 aa11.95□□□□□ -0.5
CDH3-205ENST00000566808 TMED3Q9Y3Q3 217 aa11.95□□□□□ -0.5
CDH3-205ENST00000566808 IGHV3-66A0A0C4DH42 116 aa11.94□□□□□ -0.5
CDH3-205ENST00000566808 NBDYA0A0U1RRE5 68 aa11.94□□□□□ -0.5
CDH3-205ENST00000566808 TEX50A0A1B0GTY4 177 aa11.94□□□□□ -0.5
CDH3-205ENST00000566808 SULT1C2O00338 296 aa11.94□□□□□ -0.5
CDH3-205ENST00000566808 RCN1Q15293 331 aa11.94□□□□□ -0.5
CDH3-205ENST00000566808 TOMM20LQ6UXN7 152 aa11.94□□□□□ -0.5
CDH3-205ENST00000566808 TMEM91Q6ZNR0 172 aa11.94□□□□□ -0.5
CDH3-205ENST00000566808 PQLC1Q8N2U9 271 aa11.94□□□□□ -0.5
CDH3-205ENST00000566808 STXBP6Q8NFX7 210 aa11.94□□□□□ -0.5
CDH3-205ENST00000566808 OR1P1Q8NH06 330 aa11.94□□□□□ -0.5
CDH3-205ENST00000566808 TMEM203Q969S6 136 aa11.94□□□□□ -0.5
CDH3-205ENST00000566808 ELF5Q9UKW6 265 aaPredicted RBP11.94□□□□□ -0.5
CDH3-205ENST00000566808 METTL21EPA6NDL7 271 aa11.93□□□□□ -0.5
CDH3-205ENST00000566808 CALRP27797 417 aaKnown RBP11.93□□□□□ -0.5
CDH3-205ENST00000566808 FGF9P31371 208 aaPredicted RBP11.93□□□□□ -0.5
CDH3-205ENST00000566808 ERVK-16P61578 105 aa11.93□□□□□ -0.5
CDH3-205ENST00000566808 NUTF2P61970 127 aaKnown RBP11.93□□□□□ -0.5
CDH3-205ENST00000566808 SPHARQ15513 63 aa11.93□□□□□ -0.5
CDH3-205ENST00000566808 ZBTB34Q8NCN2 500 aa11.93□□□□□ -0.5
CDH3-205ENST00000566808 SECTM1Q8WVN6 248 aa11.93□□□□□ -0.5
CDH3-205ENST00000566808 UFD1Q92890 307 aa11.93□□□□□ -0.5
CDH3-205ENST00000566808 SLC25A46Q96AG3 418 aa11.93□□□□□ -0.5
CDH3-205ENST00000566808 NEU1Q99519 415 aa11.93□□□□□ -0.5
CDH3-205ENST00000566808 PLCXD1Q9NUJ7 323 aa11.93□□□□□ -0.5
CDH3-205ENST00000566808 LSM2Q9Y333 95 aaKnown RBP11.93□□□□□ -0.5
CDH3-205ENST00000566808 I3L2K1 104 aa11.92□□□□□ -0.5
CDH3-205ENST00000566808 GNG7O60262 68 aa11.92□□□□□ -0.5
CDH3-205ENST00000566808 TRAM1Q15629 374 aa11.92□□□□□ -0.5
CDH3-205ENST00000566808 LAIR2Q6ISS4 152 aa11.92□□□□□ -0.5
CDH3-205ENST00000566808 OR13F1Q8NGS4 319 aa11.92□□□□□ -0.5
CDH3-205ENST00000566808 MISP3Q96FF7 219 aa11.92□□□□□ -0.5
CDH3-205ENST00000566808 TMEM56Q96MV1 263 aa11.92□□□□□ -0.5
CDH3-205ENST00000566808 NIPSNAP3BQ9BS92 247 aa11.92□□□□□ -0.5
CDH3-205ENST00000566808 YTHDF1Q9BYJ9 559 aaKnown RBP11.92□□□□□ -0.5
CDH3-205ENST00000566808 ZFAND3Q9H8U3 227 aa11.92□□□□□ -0.5
CDH3-205ENST00000566808 CCL28Q9NRJ3 127 aa11.92□□□□□ -0.5
CDH3-205ENST00000566808 FKBP14Q9NWM8 211 aa11.92□□□□□ -0.5
CDH3-205ENST00000566808 ANXA10Q9UJ72 324 aa11.92□□□□□ -0.5
CDH3-205ENST00000566808 MARCH11A6NNE9 402 aa11.91□□□□□ -0.5
CDH3-205ENST00000566808 PSMA1P25786 263 aaKnown RBP11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms