RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 HSPB9Q9BQS6 159 aa24.23■■□□□ 1.47
CTCF-203ENST00000566078 FAM103A1Q9BTL3 118 aaKnown RBP24.23■■□□□ 1.47
CTCF-203ENST00000566078 PRDM13Q9H4Q3 707 aa24.23■■□□□ 1.47
CTCF-203ENST00000566078 BTBD17A6NE02 478 aa24.22■■□□□ 1.47
CTCF-203ENST00000566078 SH2D7A6NKC9 451 aaPredicted RBP24.22■■□□□ 1.47
CTCF-203ENST00000566078 HBG1P69891 147 aa24.22■■□□□ 1.47
CTCF-203ENST00000566078 HBG2P69892 147 aa24.22■■□□□ 1.47
CTCF-203ENST00000566078 C16orf82Q7Z2V1 217 aa24.22■■□□□ 1.47
CTCF-203ENST00000566078 CYTL1Q9NRR1 136 aa24.22■■□□□ 1.47
CTCF-203ENST00000566078 ANK3Q12955 4377 aaKnown RBP24.22■■□□□ 1.47
CTCF-203ENST00000566078 PMS2P5A8MQ11 134 aa24.21■■□□□ 1.47
CTCF-203ENST00000566078 RNASE2P10153 161 aaKnown RBP24.21■■□□□ 1.47
CTCF-203ENST00000566078 AREGP15514 252 aa24.21■■□□□ 1.47
CTCF-203ENST00000566078 RAB11AP62491 216 aa24.21■■□□□ 1.47
CTCF-203ENST00000566078 BSXQ3C1V8 233 aa24.21■■□□□ 1.47
CTCF-203ENST00000566078 SLC51BQ86UW2 128 aa24.21■■□□□ 1.47
CTCF-203ENST00000566078 STPG2Q8N412 459 aa24.21■■□□□ 1.47
CTCF-203ENST00000566078 TMUB1Q9BVT8 246 aa24.21■■□□□ 1.47
CTCF-203ENST00000566078 WFDC1Q9HC57 220 aa24.21■■□□□ 1.47
CTCF-203ENST00000566078 TNFRSF19Q9NS68 423 aa24.21■■□□□ 1.47
CTCF-203ENST00000566078 TMEM160Q9NX00 188 aa24.21■■□□□ 1.47
CTCF-203ENST00000566078 SLC38A11Q08AI6 406 aa24.21■■□□□ 1.47
CTCF-203ENST00000566078 SIGLECL1Q8N7X8 197 aa24.21■■□□□ 1.47
CTCF-203ENST00000566078 GON7Q9BXV9 100 aa24.21■■□□□ 1.47
CTCF-203ENST00000566078 SETXQ7Z333 2677 aaKnown RBP24.2■■□□□ 1.47
CTCF-203ENST00000566078 AMY1AP04745 511 aa24.2■■□□□ 1.46
CTCF-203ENST00000566078 CD99P14209 185 aa24.2■■□□□ 1.46
CTCF-203ENST00000566078 RPL7L1Q6DKI1 246 aaKnown RBP24.2■■□□□ 1.46
CTCF-203ENST00000566078 ETV3LQ6ZN32 361 aa24.2■■□□□ 1.46
CTCF-203ENST00000566078 HSD17B13Q7Z5P4 300 aaPredicted RBP24.2■■□□□ 1.46
CTCF-203ENST00000566078 LILRB2Q8N423 598 aa24.2■■□□□ 1.46
CTCF-203ENST00000566078 SRSF8Q9BRL6 282 aaKnown RBP24.2■■□□□ 1.46
CTCF-203ENST00000566078 HOXA3O43365 443 aaPredicted RBP24.19■■□□□ 1.46
CTCF-203ENST00000566078 IFNA4P05014 189 aa24.19■■□□□ 1.46
CTCF-203ENST00000566078 C2orf83Q53S99 150 aa24.19■■□□□ 1.46
CTCF-203ENST00000566078 OR10P1Q8NGE3 313 aa24.19■■□□□ 1.46
CTCF-203ENST00000566078 M0QZK8 103 aa24.18■■□□□ 1.46
CTCF-203ENST00000566078 SCAF4O95104 1147 aaKnown RBP24.18■■□□□ 1.46
CTCF-203ENST00000566078 PARP11Q9NR21 331 aa24.18■■□□□ 1.46
CTCF-203ENST00000566078 VPREB3Q9UKI3 123 aa24.18■■□□□ 1.46
CTCF-203ENST00000566078 FBXO7Q9Y3I1 522 aa24.18■■□□□ 1.46
CTCF-203ENST00000566078 ATP5IP56385 69 aaPredicted RBP24.17■■□□□ 1.46
CTCF-203ENST00000566078 UBA52P62987 128 aaKnown RBP24.17■■□□□ 1.46
CTCF-203ENST00000566078 IFITM2Q01629 132 aa24.17■■□□□ 1.46
CTCF-203ENST00000566078 TUSC1Q2TAM9 212 aa24.17■■□□□ 1.46
CTCF-203ENST00000566078 P2RX4Q99571 388 aa24.17■■□□□ 1.46
CTCF-203ENST00000566078 ATP5SQ99766 215 aa24.17■■□□□ 1.46
CTCF-203ENST00000566078 SLA2Q9H6Q3 261 aa24.17■■□□□ 1.46
CTCF-203ENST00000566078 PINX1Q96BK5 328 aaKnown RBP24.17■■□□□ 1.46
CTCF-203ENST00000566078 FOSL1P15407 271 aa24.16■■□□□ 1.46
CTCF-203ENST00000566078 SUB1P53999 127 aaKnown RBP eCLIP24.16■■□□□ 1.46
CTCF-203ENST00000566078 C19orf35Q6ZS72 473 aa24.16■■□□□ 1.46
CTCF-203ENST00000566078 ZNF114Q8NC26 417 aa24.16■■□□□ 1.46
CTCF-203ENST00000566078 ST8SIA2Q92186 375 aa24.16■■□□□ 1.46
CTCF-203ENST00000566078 BORCS7-ASMTA0A0B4J1R7 106 aa24.15■■□□□ 1.46
CTCF-203ENST00000566078 DFFBO76075 338 aa24.15■■□□□ 1.46
CTCF-203ENST00000566078 C9orf152Q5JTZ5 239 aa24.15■■□□□ 1.46
CTCF-203ENST00000566078 STOML3Q8TAV4 291 aa24.15■■□□□ 1.46
CTCF-203ENST00000566078 PRSS46E5RG02 174 aa24.14■■□□□ 1.46
CTCF-203ENST00000566078 ATP6V0E1O15342 81 aa24.14■■□□□ 1.46
CTCF-203ENST00000566078 JTBO76095 146 aa24.14■■□□□ 1.46
CTCF-203ENST00000566078 EGR2P11161 476 aaPredicted RBP24.14■■□□□ 1.46
CTCF-203ENST00000566078 TPT1P13693 172 aaKnown RBP24.14■■□□□ 1.46
CTCF-203ENST00000566078 ZNF266Q14584 549 aa24.13■■□□□ 1.45
CTCF-203ENST00000566078 ASPHD1Q5U4P2 390 aa24.13■■□□□ 1.45
CTCF-203ENST00000566078 CFDP00746 253 aaPredicted RBP24.13■■□□□ 1.45
CTCF-203ENST00000566078 LFNGQ8NES3 379 aa24.13■■□□□ 1.45
CTCF-203ENST00000566078 F11RQ9Y624 299 aaKnown RBP24.13■■□□□ 1.45
CTCF-203ENST00000566078 HIVEP1P15822 2718 aa24.13■■□□□ 1.45
CTCF-203ENST00000566078 LINC01548A6NM66 108 aa24.12■■□□□ 1.45
CTCF-203ENST00000566078 SCGB2A2Q13296 93 aa24.12■■□□□ 1.45
CTCF-203ENST00000566078 ATP6V1FQ16864 119 aa24.12■■□□□ 1.45
CTCF-203ENST00000566078 TEX261Q6UWH6 196 aa24.12■■□□□ 1.45
CTCF-203ENST00000566078 UBAC2Q8NBM4 344 aa24.12■■□□□ 1.45
CTCF-203ENST00000566078 SGMS2Q8NHU3 365 aa24.12■■□□□ 1.45
CTCF-203ENST00000566078 TMEM147Q9BVK8 224 aa24.12■■□□□ 1.45
CTCF-203ENST00000566078 CTRB1P17538 263 aa24.11■■□□□ 1.45
CTCF-203ENST00000566078 EIF5AP63241 154 aaKnown RBP24.11■■□□□ 1.45
CTCF-203ENST00000566078 CTRB2Q6GPI1 263 aa24.11■■□□□ 1.45
CTCF-203ENST00000566078 RBMS3Q6XE24 437 aaKnown RBP24.11■■□□□ 1.45
CTCF-203ENST00000566078 OR1P1Q8NH06 330 aa24.11■■□□□ 1.45
CTCF-203ENST00000566078 HIVEP2P31629 2446 aa24.1■■□□□ 1.45
CTCF-203ENST00000566078 UBE2L5PA0A1B0GUS4 154 aa24.1■■□□□ 1.45
CTCF-203ENST00000566078 MFAP2P55001 183 aa24.1■■□□□ 1.45
CTCF-203ENST00000566078 BLCAPP62952 87 aa24.1■■□□□ 1.45
CTCF-203ENST00000566078 ECSCRQ19T08 205 aa24.1■■□□□ 1.45
CTCF-203ENST00000566078 BAP18Q8IXM2 172 aa24.1■■□□□ 1.45
CTCF-203ENST00000566078 UQCC1Q9NVA1 299 aa24.1■■□□□ 1.45
CTCF-203ENST00000566078 NPIPB5A8MRT5 1133 aa24.1■■□□□ 1.45
CTCF-203ENST00000566078 IFNA5P01569 189 aa24.1■■□□□ 1.45
CTCF-203ENST00000566078 DLK1P80370 383 aa24.1■■□□□ 1.45
CTCF-203ENST00000566078 SLC25A24Q6NUK1 477 aa24.1■■□□□ 1.45
CTCF-203ENST00000566078 SRD5A1P18405 259 aa24.09■■□□□ 1.45
CTCF-203ENST00000566078 UNQ5815/PRO19632Q6UWF5 114 aa24.09■■□□□ 1.45
CTCF-203ENST00000566078 Q71RC1 249 aaPredicted RBP24.09■■□□□ 1.45
CTCF-203ENST00000566078 HSD17B11Q8NBQ5 300 aa24.09■■□□□ 1.45
CTCF-203ENST00000566078 RNASEH2CQ8TDP1 164 aaKnown RBP24.09■■□□□ 1.45
CTCF-203ENST00000566078 GGACTQ9BVM4 153 aa24.09■■□□□ 1.45
CTCF-203ENST00000566078 WNT10AQ9GZT5 417 aa24.09■■□□□ 1.45
CTCF-203ENST00000566078 CDC42EP3Q9UKI2 254 aa24.09■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms