RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 HLA-AP01891 365 aaKnown RBP13.35□□□□□ -0.27
CLN3-217ENST00000565354 CRYGCP07315 174 aa13.35□□□□□ -0.27
CLN3-217ENST00000565354 P0C879 139 aa13.35□□□□□ -0.27
CLN3-217ENST00000565354 DEFA1P59665 94 aa13.35□□□□□ -0.27
CLN3-217ENST00000565354 DEFA3P59666 94 aa13.35□□□□□ -0.27
CLN3-217ENST00000565354 PRCDQ00LT1 54 aa13.35□□□□□ -0.27
CLN3-217ENST00000565354 ATP5G2Q06055 141 aa13.35□□□□□ -0.27
CLN3-217ENST00000565354 ASAH1Q13510 395 aa13.35□□□□□ -0.27
CLN3-217ENST00000565354 C19orf35Q6ZS72 473 aa13.35□□□□□ -0.27
CLN3-217ENST00000565354 ZNF429Q86V71 674 aa13.35□□□□□ -0.27
CLN3-217ENST00000565354 OR1N2Q8NGR9 330 aa13.35□□□□□ -0.27
CLN3-217ENST00000565354 ENKURQ8TC29 256 aa13.35□□□□□ -0.27
CLN3-217ENST00000565354 GPR146Q96CH1 333 aa13.35□□□□□ -0.27
CLN3-217ENST00000565354 RAX2Q96IS3 184 aa13.35□□□□□ -0.27
CLN3-217ENST00000565354 ALX4Q9H161 411 aaPredicted RBP13.35□□□□□ -0.27
CLN3-217ENST00000565354 CTNNBIP1Q9NSA3 81 aaPredicted RBP13.35□□□□□ -0.27
CLN3-217ENST00000565354 CACNG5Q9UF02 275 aa13.35□□□□□ -0.27
CLN3-217ENST00000565354 SHPKQ9UHJ6 478 aa13.35□□□□□ -0.27
CLN3-217ENST00000565354 FBXL7Q9UJT9 491 aa13.35□□□□□ -0.27
CLN3-217ENST00000565354 TRAV6A0A075B6T7 132 aa13.34□□□□□ -0.27
CLN3-217ENST00000565354 A0A0B4J293 547 aa13.34□□□□□ -0.27
CLN3-217ENST00000565354 DUXBA0A1W2PPF3 345 aa13.34□□□□□ -0.27
CLN3-217ENST00000565354 I3L521 148 aa13.34□□□□□ -0.27
CLN3-217ENST00000565354 TCRBP04435 133 aa13.34□□□□□ -0.27
CLN3-217ENST00000565354 OR4E1P0C645 316 aa13.34□□□□□ -0.27
CLN3-217ENST00000565354 SULT1A3P0DMM9 295 aa13.34□□□□□ -0.27
CLN3-217ENST00000565354 SULT1A4P0DMN0 295 aa13.34□□□□□ -0.27
CLN3-217ENST00000565354 ANXA7P20073 488 aaKnown RBP13.34□□□□□ -0.27
CLN3-217ENST00000565354 HOXA1P49639 335 aaPredicted RBP13.34□□□□□ -0.27
CLN3-217ENST00000565354 ERHP84090 104 aaKnown RBP13.34□□□□□ -0.27
CLN3-217ENST00000565354 RUNX1Q01196 453 aa13.34□□□□□ -0.27
CLN3-217ENST00000565354 ZNF616Q08AN1 781 aa13.34□□□□□ -0.27
CLN3-217ENST00000565354 SPINK9Q5DT21 86 aa13.34□□□□□ -0.27
CLN3-217ENST00000565354 DEFB121Q5J5C9 76 aa13.34□□□□□ -0.27
CLN3-217ENST00000565354 SLC25A24Q6NUK1 477 aa13.34□□□□□ -0.27
CLN3-217ENST00000565354 ETV3LQ6ZN32 361 aa13.34□□□□□ -0.27
CLN3-217ENST00000565354 LYZL2Q7Z4W2 148 aa13.34□□□□□ -0.27
CLN3-217ENST00000565354 NECAP1Q8NC96 275 aa13.34□□□□□ -0.27
CLN3-217ENST00000565354 COQ8AQ8NI60 647 aa13.34□□□□□ -0.27
CLN3-217ENST00000565354 THYN1Q9P016 225 aa13.34□□□□□ -0.27
CLN3-217ENST00000565354 TBC1D24Q9ULP9 559 aa13.34□□□□□ -0.27
CLN3-217ENST00000565354 C9orf170A2RU37 121 aa13.33□□□□□ -0.28
CLN3-217ENST00000565354 ANKRD34BA5PLL1 514 aa13.33□□□□□ -0.28
CLN3-217ENST00000565354 OR8U8P0C7N1 319 aa13.33□□□□□ -0.28
CLN3-217ENST00000565354 WT1-ASQ06250 92 aa13.33□□□□□ -0.28
CLN3-217ENST00000565354 EXOSC2Q13868 293 aaKnown RBP13.33□□□□□ -0.28
CLN3-217ENST00000565354 ANKRD55Q3KP44 614 aa13.33□□□□□ -0.28
CLN3-217ENST00000565354 P2RX4Q99571 388 aa13.33□□□□□ -0.28
CLN3-217ENST00000565354 NUDT15Q9NV35 164 aa13.33□□□□□ -0.28
CLN3-217ENST00000565354 TRBV9A0A0B4J1U6 114 aa13.32□□□□□ -0.28
CLN3-217ENST00000565354 LINC01619G3V211 115 aa13.32□□□□□ -0.28
CLN3-217ENST00000565354 HSPB1P04792 205 aaKnown RBP13.32□□□□□ -0.28
CLN3-217ENST00000565354 H2AFB2P0C5Z0 115 aa13.32□□□□□ -0.28
CLN3-217ENST00000565354 C15orf32Q32M92 178 aa13.32□□□□□ -0.28
CLN3-217ENST00000565354 Q6ZRM9 215 aa13.32□□□□□ -0.28
CLN3-217ENST00000565354 LYG2Q86SG7 212 aa13.32□□□□□ -0.28
CLN3-217ENST00000565354 LINC00482Q8N8I6 264 aa13.32□□□□□ -0.28
CLN3-217ENST00000565354 OR1L6Q8NGR2 347 aa13.32□□□□□ -0.28
CLN3-217ENST00000565354 RANGRFQ9HD47 186 aaPredicted RBP13.32□□□□□ -0.28
CLN3-217ENST00000565354 CACFD1Q9UGQ2 172 aa13.32□□□□□ -0.28
CLN3-217ENST00000565354 IGHV4OR15-8A0A075B7B6 117 aa13.31□□□□□ -0.28
CLN3-217ENST00000565354 A0A087WW49 117 aa13.31□□□□□ -0.28
CLN3-217ENST00000565354 WI2-2373I1.2A0A1W2PRP0 233 aa13.31□□□□□ -0.28
CLN3-217ENST00000565354 CEBPZOSA8MTT3 80 aa13.31□□□□□ -0.28
CLN3-217ENST00000565354 NXPH3O95157 252 aa13.31□□□□□ -0.28
CLN3-217ENST00000565354 HOXB5P09067 269 aa13.31□□□□□ -0.28
CLN3-217ENST00000565354 SNCAP37840 140 aa13.31□□□□□ -0.28
CLN3-217ENST00000565354 SPCS3P61009 180 aa13.31□□□□□ -0.28
CLN3-217ENST00000565354 CD69Q07108 199 aa13.31□□□□□ -0.28
CLN3-217ENST00000565354 DHRS2Q13268 280 aa13.31□□□□□ -0.28
CLN3-217ENST00000565354 SMCO1Q147U7 214 aa13.31□□□□□ -0.28
CLN3-217ENST00000565354 LRTM2Q8N967 370 aa13.31□□□□□ -0.28
CLN3-217ENST00000565354 OR1S1Q8NH92 325 aa13.31□□□□□ -0.28
CLN3-217ENST00000565354 EEF1AKMT3Q96AZ1 226 aa13.31□□□□□ -0.28
CLN3-217ENST00000565354 FANCD2OSQ96PS1 177 aa13.31□□□□□ -0.28
CLN3-217ENST00000565354 PEF1Q9UBV8 284 aaKnown RBP13.31□□□□□ -0.28
CLN3-217ENST00000565354 F11RQ9Y624 299 aaKnown RBP13.31□□□□□ -0.28
CLN3-217ENST00000565354 IGLV11-55A0A075B6I3 123 aa13.3□□□□□ -0.28
CLN3-217ENST00000565354 NDUFB8O95169 186 aa13.3□□□□□ -0.28
CLN3-217ENST00000565354 IFNA21P01568 189 aa13.3□□□□□ -0.28
CLN3-217ENST00000565354 IFITM3Q01628 133 aa13.3□□□□□ -0.28
CLN3-217ENST00000565354 NMSQ5H8A3 153 aa13.3□□□□□ -0.28
CLN3-217ENST00000565354 FAM209BQ5JX69 171 aa13.3□□□□□ -0.28
CLN3-217ENST00000565354 ZNF343Q6P1L6 599 aa13.3□□□□□ -0.28
CLN3-217ENST00000565354 OR2C3Q8N628 320 aa13.3□□□□□ -0.28
CLN3-217ENST00000565354 OR52E5Q8NH55 327 aa13.3□□□□□ -0.28
CLN3-217ENST00000565354 CXorf58Q96LI9 332 aa13.3□□□□□ -0.28
CLN3-217ENST00000565354 TMED3Q9Y3Q3 217 aa13.3□□□□□ -0.28
CLN3-217ENST00000565354 A0A1B0GU03 582 aa13.29□□□□□ -0.28
CLN3-217ENST00000565354 DUS4LO95620 317 aaKnown RBP13.29□□□□□ -0.28
CLN3-217ENST00000565354 ZP3P21754 424 aa13.29□□□□□ -0.28
CLN3-217ENST00000565354 SUB1P53999 127 aaKnown RBP eCLIP13.29□□□□□ -0.28
CLN3-217ENST00000565354 SLURP1P55000 103 aa13.29□□□□□ -0.28
CLN3-217ENST00000565354 KRTAP10-11P60412 298 aa13.29□□□□□ -0.28
CLN3-217ENST00000565354 FHL3Q13643 280 aa13.29□□□□□ -0.28
CLN3-217ENST00000565354 RCC1LQ96I51 464 aaKnown RBP13.29□□□□□ -0.28
CLN3-217ENST00000565354 B9D2Q9BPU9 175 aa13.29□□□□□ -0.28
CLN3-217ENST00000565354 MCRIP2Q9BUT9 160 aaKnown RBP13.29□□□□□ -0.28
CLN3-217ENST00000565354 HEYLQ9NQ87 328 aaPredicted RBP13.29□□□□□ -0.28
CLN3-217ENST00000565354 S4R3C0 116 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms