RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 SLC25A24Q6NUK1 477 aa11.14□□□□□ -0.63
CLN3-213ENST00000565047 PLET1Q6UQ28 207 aa11.14□□□□□ -0.63
CLN3-213ENST00000565047 ARRDC1Q8N5I2 433 aa11.14□□□□□ -0.63
CLN3-213ENST00000565047 OR1P1Q8NH06 330 aa11.14□□□□□ -0.63
CLN3-213ENST00000565047 TMEM190Q8WZ59 177 aa11.14□□□□□ -0.63
CLN3-213ENST00000565047 ZNF486Q96H40 463 aaPredicted RBP11.14□□□□□ -0.63
CLN3-213ENST00000565047 TSC22D3Q99576 134 aa11.14□□□□□ -0.63
CLN3-213ENST00000565047 SPATA25Q9BR10 227 aa11.14□□□□□ -0.63
CLN3-213ENST00000565047 CHRDL1Q9BU40 450 aa11.14□□□□□ -0.63
CLN3-213ENST00000565047 HIPK2Q9H2X6 1198 aa11.14□□□□□ -0.63
CLN3-213ENST00000565047 SLC2A8Q9NY64 477 aa11.14□□□□□ -0.63
CLN3-213ENST00000565047 PLECQ15149 4684 aaKnown RBP11.14□□□□□ -0.63
CLN3-213ENST00000565047 IGHV3-35A0A0C4DH35 117 aa11.13□□□□□ -0.63
CLN3-213ENST00000565047 OR2T8A6NH00 312 aa11.13□□□□□ -0.63
CLN3-213ENST00000565047 I3L2K1 104 aa11.13□□□□□ -0.63
CLN3-213ENST00000565047 CTDSP2O14595 271 aa11.13□□□□□ -0.63
CLN3-213ENST00000565047 IGKV1-5P01602 117 aa11.13□□□□□ -0.63
CLN3-213ENST00000565047 CTSGP08311 255 aa11.13□□□□□ -0.63
CLN3-213ENST00000565047 PI3P19957 117 aa11.13□□□□□ -0.63
CLN3-213ENST00000565047 TBPP20226 339 aa11.13□□□□□ -0.63
CLN3-213ENST00000565047 RNASE12Q5GAN4 147 aaKnown RBP11.13□□□□□ -0.63
CLN3-213ENST00000565047 OR2C3Q8N628 320 aa11.13□□□□□ -0.63
CLN3-213ENST00000565047 TMEM229BQ8NBD8 167 aa11.13□□□□□ -0.63
CLN3-213ENST00000565047 ZNF114Q8NC26 417 aa11.13□□□□□ -0.63
CLN3-213ENST00000565047 MARC2Q969Z3 335 aa11.13□□□□□ -0.63
CLN3-213ENST00000565047 BSCL2Q96G97 398 aaPredicted RBP11.13□□□□□ -0.63
CLN3-213ENST00000565047 TP53RKQ96S44 253 aa11.13□□□□□ -0.63
CLN3-213ENST00000565047 HINT2Q9BX68 163 aa11.13□□□□□ -0.63
CLN3-213ENST00000565047 TUBA4BQ9H853 241 aa11.13□□□□□ -0.63
CLN3-213ENST00000565047 MRPL27Q9P0M9 148 aaKnown RBP11.13□□□□□ -0.63
CLN3-213ENST00000565047 IGHV3-21A0A0B4J1V1 117 aa11.12□□□□□ -0.63
CLN3-213ENST00000565047 A0A0B4J293 547 aa11.12□□□□□ -0.63
CLN3-213ENST00000565047 OR11H12B2RN74 326 aa11.12□□□□□ -0.63
CLN3-213ENST00000565047 FCGR2BP31994 310 aaPredicted RBP11.12□□□□□ -0.63
CLN3-213ENST00000565047 PIGPP57054 158 aa11.12□□□□□ -0.63
CLN3-213ENST00000565047 PRCDQ00LT1 54 aa11.12□□□□□ -0.63
CLN3-213ENST00000565047 GUCA2BQ16661 112 aa11.12□□□□□ -0.63
CLN3-213ENST00000565047 IZUMO4Q1ZYL8 232 aa11.12□□□□□ -0.63
CLN3-213ENST00000565047 RNASE10Q5GAN6 216 aaKnown RBP11.12□□□□□ -0.63
CLN3-213ENST00000565047 PVRIGQ6DKI7 326 aa11.12□□□□□ -0.63
CLN3-213ENST00000565047 BTNL8Q6UX41 500 aa11.12□□□□□ -0.63
CLN3-213ENST00000565047 GPR141Q7Z602 305 aa11.12□□□□□ -0.63
CLN3-213ENST00000565047 OR1L6Q8NGR2 347 aa11.12□□□□□ -0.63
CLN3-213ENST00000565047 TERB2Q8NHR7 220 aa11.12□□□□□ -0.63
CLN3-213ENST00000565047 TMEM56Q96MV1 263 aa11.12□□□□□ -0.63
CLN3-213ENST00000565047 C21orf62Q9NYP8 219 aa11.12□□□□□ -0.63
CLN3-213ENST00000565047 UFC1Q9Y3C8 167 aa11.12□□□□□ -0.63
CLN3-213ENST00000565047 CEPT1Q9Y6K0 416 aa11.12□□□□□ -0.63
CLN3-213ENST00000565047 TRAV25A0A0B4J276 109 aa11.11□□□□□ -0.63
CLN3-213ENST00000565047 INS-IGF2F8WCM5 200 aa11.11□□□□□ -0.63
CLN3-213ENST00000565047 GABARAPH6UMI1 98 aa11.11□□□□□ -0.63
CLN3-213ENST00000565047 CYB5BO43169 146 aa11.11□□□□□ -0.63
CLN3-213ENST00000565047 S100GP29377 79 aa11.11□□□□□ -0.63
CLN3-213ENST00000565047 HSPE1P61604 102 aaKnown RBP11.11□□□□□ -0.63
CLN3-213ENST00000565047 SPSB3Q6PJ21 355 aa11.11□□□□□ -0.63
CLN3-213ENST00000565047 H2BFWTQ7Z2G1 175 aa11.11□□□□□ -0.63
CLN3-213ENST00000565047 DYNC2LI1Q8TCX1 351 aa11.11□□□□□ -0.63
CLN3-213ENST00000565047 C15orf40Q8WUR7 153 aa11.11□□□□□ -0.63
CLN3-213ENST00000565047 C5orf66Q9H5L9 145 aa11.11□□□□□ -0.63
CLN3-213ENST00000565047 RETNQ9HD89 108 aa11.11□□□□□ -0.63
CLN3-213ENST00000565047 PALMDQ9NP74 551 aa11.11□□□□□ -0.63
CLN3-213ENST00000565047 TENM2Q9NT68 2774 aa11.11□□□□□ -0.63
CLN3-213ENST00000565047 NDUFA4O00483 81 aa11.1□□□□□ -0.63
CLN3-213ENST00000565047 SCAF4O95104 1147 aaKnown RBP11.1□□□□□ -0.63
CLN3-213ENST00000565047 IFNA6P05013 189 aa11.1□□□□□ -0.63
CLN3-213ENST00000565047 SSBP1Q04837 148 aaKnown RBP11.1□□□□□ -0.63
CLN3-213ENST00000565047 SRD5A3Q9H8P0 318 aa11.1□□□□□ -0.63
CLN3-213ENST00000565047 DAZ1Q9NQZ3 744 aaKnown RBP11.1□□□□□ -0.63
CLN3-213ENST00000565047 C3orf85A0A1B0GTC6 90 aa11.09□□□□□ -0.63
CLN3-213ENST00000565047 K7EMT4 169 aa11.09□□□□□ -0.63
CLN3-213ENST00000565047 CTDSPLO15194 276 aa11.09□□□□□ -0.63
CLN3-213ENST00000565047 LYL1P12980 280 aa11.09□□□□□ -0.63
CLN3-213ENST00000565047 UCP1P25874 307 aa11.09□□□□□ -0.63
CLN3-213ENST00000565047 TMBIM6P55061 237 aa11.09□□□□□ -0.63
CLN3-213ENST00000565047 TAS2R19P59542 299 aa11.09□□□□□ -0.63
CLN3-213ENST00000565047 STEAP1BQ6NZ63 245 aa11.09□□□□□ -0.63
CLN3-213ENST00000565047 OR13C8Q8NGS7 320 aa11.09□□□□□ -0.63
CLN3-213ENST00000565047 OR4A16Q8NH70 328 aa11.09□□□□□ -0.63
CLN3-213ENST00000565047 SMIM4Q8WVI0 70 aa11.09□□□□□ -0.63
CLN3-213ENST00000565047 OR10C1Q96KK4 312 aa11.09□□□□□ -0.63
CLN3-213ENST00000565047 SOSTQ9BQB4 213 aa11.09□□□□□ -0.63
CLN3-213ENST00000565047 RTBDNQ9BSG5 229 aaPredicted RBP11.09□□□□□ -0.63
CLN3-213ENST00000565047 A0A0G2JRQ6 117 aa11.08□□□□□ -0.64
CLN3-213ENST00000565047 TSPAN4O14817 238 aa11.08□□□□□ -0.64
CLN3-213ENST00000565047 RAB3DO95716 219 aa11.08□□□□□ -0.64
CLN3-213ENST00000565047 CTSDP07339 412 aaPredicted RBP11.08□□□□□ -0.64
CLN3-213ENST00000565047 PGAM2P15259 253 aa11.08□□□□□ -0.64
CLN3-213ENST00000565047 MRPS10P82664 201 aaKnown RBP11.08□□□□□ -0.64
CLN3-213ENST00000565047 SP6Q3SY56 376 aa11.08□□□□□ -0.64
CLN3-213ENST00000565047 AARDQ4LEZ3 155 aa11.08□□□□□ -0.64
CLN3-213ENST00000565047 FAAP20Q6NZ36 180 aa11.08□□□□□ -0.64
CLN3-213ENST00000565047 Q6ZRM9 215 aa11.08□□□□□ -0.64
CLN3-213ENST00000565047 SLC16A13Q7RTY0 426 aa11.08□□□□□ -0.64
CLN3-213ENST00000565047 CLVS1Q8IUQ0 354 aaPredicted RBP11.08□□□□□ -0.64
CLN3-213ENST00000565047 OR52B4Q8NGK2 314 aa11.08□□□□□ -0.64
CLN3-213ENST00000565047 MARCH1Q8TCQ1 289 aa11.08□□□□□ -0.64
CLN3-213ENST00000565047 RAB2BQ8WUD1 216 aa11.08□□□□□ -0.64
CLN3-213ENST00000565047 TXN2Q99757 166 aa11.08□□□□□ -0.64
CLN3-213ENST00000565047 BCL7BQ9BQE9 202 aa11.08□□□□□ -0.64
CLN3-213ENST00000565047 SLIRPQ9GZT3 109 aaKnown RBP11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms