RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 OR5T1Q8NG75 326 aa16.16■□□□□ 0.18
CLN3-212ENST00000564574 CHAC2Q8WUX2 184 aa16.16■□□□□ 0.18
CLN3-212ENST00000564574 RAB40CQ96S21 281 aa16.16■□□□□ 0.18
CLN3-212ENST00000564574 K7EPK0 472 aa16.15■□□□□ 0.18
CLN3-212ENST00000564574 IGLV1-40P01703 118 aa16.15■□□□□ 0.18
CLN3-212ENST00000564574 REG1AP05451 166 aa16.15■□□□□ 0.18
CLN3-212ENST00000564574 ELANEP08246 267 aa16.15■□□□□ 0.18
CLN3-212ENST00000564574 SNCAP37840 140 aa16.15■□□□□ 0.18
CLN3-212ENST00000564574 HTR2BP41595 481 aa16.15■□□□□ 0.18
CLN3-212ENST00000564574 SUB1P53999 127 aaKnown RBP eCLIP16.15■□□□□ 0.18
CLN3-212ENST00000564574 ATP5IP56385 69 aaPredicted RBP16.15■□□□□ 0.18
CLN3-212ENST00000564574 KLK9Q2XQG4 91 aa16.15■□□□□ 0.18
CLN3-212ENST00000564574 TEX38Q6PEX7 206 aa16.15■□□□□ 0.18
CLN3-212ENST00000564574 WIPF2Q8TF74 440 aaPredicted RBP16.15■□□□□ 0.18
CLN3-212ENST00000564574 C19orf24Q9BVV8 132 aa16.15■□□□□ 0.18
CLN3-212ENST00000564574 KLK9Q9UKQ9 250 aa16.15■□□□□ 0.18
CLN3-212ENST00000564574 RCL1Q9Y2P8 373 aaKnown RBP16.15■□□□□ 0.18
CLN3-212ENST00000564574 LSM5Q9Y4Y9 91 aaKnown RBP16.15■□□□□ 0.18
CLN3-212ENST00000564574 F11RQ9Y624 299 aaKnown RBP16.15■□□□□ 0.18
CLN3-212ENST00000564574 U3KQ87 197 aa16.15■□□□□ 0.18
CLN3-212ENST00000564574 hCG_2014768A0A024R1R8 64 aa16.14■□□□□ 0.17
CLN3-212ENST00000564574 SSSCA1O60232 199 aa16.14■□□□□ 0.17
CLN3-212ENST00000564574 SOX15O60248 233 aa16.14■□□□□ 0.17
CLN3-212ENST00000564574 RLN2P04090 185 aa16.14■□□□□ 0.17
CLN3-212ENST00000564574 PET100P0DJ07 73 aa16.14■□□□□ 0.17
CLN3-212ENST00000564574 IAPPP10997 89 aa16.14■□□□□ 0.17
CLN3-212ENST00000564574 HIST1H1BP16401 226 aaKnown RBP16.14■□□□□ 0.17
CLN3-212ENST00000564574 PVALBP20472 110 aaPredicted RBP16.14■□□□□ 0.17
CLN3-212ENST00000564574 TAS2R30P59541 319 aa16.14■□□□□ 0.17
CLN3-212ENST00000564574 S100A10P60903 97 aa16.14■□□□□ 0.17
CLN3-212ENST00000564574 RAP2BP61225 183 aa16.14■□□□□ 0.17
CLN3-212ENST00000564574 RPP30P78346 268 aaKnown RBP16.14■□□□□ 0.17
CLN3-212ENST00000564574 FOXE3Q13461 319 aa16.14■□□□□ 0.17
CLN3-212ENST00000564574 BSXQ3C1V8 233 aa16.14■□□□□ 0.17
CLN3-212ENST00000564574 NOXA1Q86UR1 476 aa16.14■□□□□ 0.17
CLN3-212ENST00000564574 OR1P1Q8NH06 330 aa16.14■□□□□ 0.17
CLN3-212ENST00000564574 PPP1R1CQ8WVI7 109 aa16.14■□□□□ 0.17
CLN3-212ENST00000564574 SMIM8Q96KF7 97 aa16.14■□□□□ 0.17
CLN3-212ENST00000564574 SLA2Q9H6Q3 261 aa16.14■□□□□ 0.17
CLN3-212ENST00000564574 RNASE2P10153 161 aaKnown RBP16.13■□□□□ 0.17
CLN3-212ENST00000564574 DEFA4P12838 97 aa16.13■□□□□ 0.17
CLN3-212ENST00000564574 BCAP31P51572 246 aa16.13■□□□□ 0.17
CLN3-212ENST00000564574 C2orf83Q53S99 150 aa16.13■□□□□ 0.17
CLN3-212ENST00000564574 ZNF329Q86UD4 541 aa16.13■□□□□ 0.17
CLN3-212ENST00000564574 SLC24A4Q8NFF2 622 aa16.13■□□□□ 0.17
CLN3-212ENST00000564574 OR5AU1Q8NGC0 362 aa16.13■□□□□ 0.17
CLN3-212ENST00000564574 OR4X2Q8NGF9 303 aa16.13■□□□□ 0.17
CLN3-212ENST00000564574 P2RX4Q99571 388 aa16.13■□□□□ 0.17
CLN3-212ENST00000564574 ZNF355PQ9NSJ1 428 aa16.13■□□□□ 0.17
CLN3-212ENST00000564574 L7N2F9 121 aa16.12■□□□□ 0.17
CLN3-212ENST00000564574 PSMB8P28062 276 aa16.12■□□□□ 0.17
CLN3-212ENST00000564574 RPL23AP62750 156 aaKnown RBP16.12■□□□□ 0.17
CLN3-212ENST00000564574 VAMP2P63027 116 aa16.12■□□□□ 0.17
CLN3-212ENST00000564574 FGL1Q08830 312 aa16.12■□□□□ 0.17
CLN3-212ENST00000564574 AWAT1Q58HT5 328 aa16.12■□□□□ 0.17
CLN3-212ENST00000564574 RNF152Q8N8N0 203 aa16.12■□□□□ 0.17
CLN3-212ENST00000564574 WDR89Q96FK6 387 aaPredicted RBP16.12■□□□□ 0.17
CLN3-212ENST00000564574 PSENENQ9NZ42 101 aa16.12■□□□□ 0.17
CLN3-212ENST00000564574 THYN1Q9P016 225 aa16.12■□□□□ 0.17
CLN3-212ENST00000564574 TRBV9A0A0B4J1U6 114 aa16.11■□□□□ 0.17
CLN3-212ENST00000564574 A0A1B0GVG6 124 aa16.11■□□□□ 0.17
CLN3-212ENST00000564574 HAX1O00165 279 aa16.11■□□□□ 0.17
CLN3-212ENST00000564574 CORTO00230 105 aa16.11■□□□□ 0.17
CLN3-212ENST00000564574 TSC22D2O75157 780 aa16.11■□□□□ 0.17
CLN3-212ENST00000564574 DEDDO75618 318 aa16.11■□□□□ 0.17
CLN3-212ENST00000564574 MPC2O95563 127 aa16.11■□□□□ 0.17
CLN3-212ENST00000564574 IFNA10P01566 189 aa16.11■□□□□ 0.17
CLN3-212ENST00000564574 PF4V1P10720 104 aa16.11■□□□□ 0.17
CLN3-212ENST00000564574 NPY1RP25929 384 aa16.11■□□□□ 0.17
CLN3-212ENST00000564574 LRRC37A5PQ49AS3 106 aa16.11■□□□□ 0.17
CLN3-212ENST00000564574 PVRIGQ6DKI7 326 aa16.11■□□□□ 0.17
CLN3-212ENST00000564574 TMEM65Q6PI78 240 aa16.11■□□□□ 0.17
CLN3-212ENST00000564574 C11orf1Q9H5F2 150 aa16.11■□□□□ 0.17
CLN3-212ENST00000564574 IGLV11-55A0A075B6I3 123 aa16.1■□□□□ 0.17
CLN3-212ENST00000564574 PAX9P55771 341 aa16.1■□□□□ 0.17
CLN3-212ENST00000564574 SLC25A24Q6NUK1 477 aa16.1■□□□□ 0.17
CLN3-212ENST00000564574 C10orf99Q6UWK7 81 aa16.1■□□□□ 0.17
CLN3-212ENST00000564574 FANCD2OSQ96PS1 177 aa16.1■□□□□ 0.17
CLN3-212ENST00000564574 STRAPQ9Y3F4 350 aaKnown RBP16.1■□□□□ 0.17
CLN3-212ENST00000564574 FAM223BA6NKX1 122 aa16.09■□□□□ 0.17
CLN3-212ENST00000564574 E5RGE8 158 aa16.09■□□□□ 0.17
CLN3-212ENST00000564574 TRGV3P03979 118 aa16.09■□□□□ 0.17
CLN3-212ENST00000564574 RAB9AP51151 201 aa16.09■□□□□ 0.17
CLN3-212ENST00000564574 RAB11AP62491 216 aa16.09■□□□□ 0.17
CLN3-212ENST00000564574 CD83Q01151 205 aa16.09■□□□□ 0.17
CLN3-212ENST00000564574 C11orf87Q6NUJ2 197 aa16.09■□□□□ 0.17
CLN3-212ENST00000564574 PRSS54Q6PEW0 395 aa16.09■□□□□ 0.17
CLN3-212ENST00000564574 C19orf35Q6ZS72 473 aa16.09■□□□□ 0.17
CLN3-212ENST00000564574 FAM223AQ8IWN6 122 aa16.09■□□□□ 0.17
CLN3-212ENST00000564574 NECAP1Q8NC96 275 aa16.09■□□□□ 0.17
CLN3-212ENST00000564574 MS4A10Q96PG2 267 aa16.09■□□□□ 0.17
CLN3-212ENST00000564574 TMEM50AO95807 157 aa16.08■□□□□ 0.16
CLN3-212ENST00000564574 PRH1P02810 166 aa16.08■□□□□ 0.16
CLN3-212ENST00000564574 MFAP2P55001 183 aa16.08■□□□□ 0.16
CLN3-212ENST00000564574 TPPP2P59282 170 aa16.08■□□□□ 0.16
CLN3-212ENST00000564574 SPANXN5Q5MJ07 72 aa16.08■□□□□ 0.16
CLN3-212ENST00000564574 SPATA3Q8NHX4 192 aa16.08■□□□□ 0.16
CLN3-212ENST00000564574 THAP6Q8TBB0 222 aa16.08■□□□□ 0.16
CLN3-212ENST00000564574 MYOZ3Q8TDC0 251 aa16.08■□□□□ 0.16
CLN3-212ENST00000564574 RNASEH2CQ8TDP1 164 aaKnown RBP16.08■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms