RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 HSBP1O75506 76 aa11.02□□□□□ -0.65
CLK3-206ENST00000562078 MT-CO2P00403 227 aa11.02□□□□□ -0.65
CLK3-206ENST00000562078 STAG3L3P0CL85 134 aa11.02□□□□□ -0.65
CLK3-206ENST00000562078 CX3CL1P78423 397 aa11.02□□□□□ -0.65
CLK3-206ENST00000562078 GABRA6Q16445 453 aa11.02□□□□□ -0.65
CLK3-206ENST00000562078 SLC25A34Q6PIV7 304 aa11.02□□□□□ -0.65
CLK3-206ENST00000562078 LHFPL2Q6ZUX7 228 aa11.02□□□□□ -0.65
CLK3-206ENST00000562078 NINJ1Q92982 152 aa11.02□□□□□ -0.65
CLK3-206ENST00000562078 NAA38Q9BRA0 125 aaKnown RBP11.02□□□□□ -0.65
CLK3-206ENST00000562078 C1QTNF5Q9BXJ0 243 aa11.02□□□□□ -0.65
CLK3-206ENST00000562078 CHODLQ9H9P2 273 aa11.02□□□□□ -0.65
CLK3-206ENST00000562078 C5orf49A4QMS7 147 aa11.01□□□□□ -0.65
CLK3-206ENST00000562078 COL8A2P25067 703 aa11.01□□□□□ -0.65
CLK3-206ENST00000562078 PPOXP50336 477 aa11.01□□□□□ -0.65
CLK3-206ENST00000562078 FOXE3Q13461 319 aa11.01□□□□□ -0.65
CLK3-206ENST00000562078 FXYD3Q14802 87 aa11.01□□□□□ -0.65
CLK3-206ENST00000562078 ATP6V0BQ99437 205 aa11.01□□□□□ -0.65
CLK3-206ENST00000562078 PRDM14Q9GZV8 571 aa11.01□□□□□ -0.65
CLK3-206ENST00000562078 SPRR3Q9UBC9 169 aa11.01□□□□□ -0.65
CLK3-206ENST00000562078 PPP1R3CQ9UQK1 317 aa11.01□□□□□ -0.65
CLK3-206ENST00000562078 OR51B2Q9Y5P1 312 aa11.01□□□□□ -0.65
CLK3-206ENST00000562078 ARL14EPLP0DKL9 152 aa11.01□□□□□ -0.65
CLK3-206ENST00000562078 CEACAM3P40198 252 aa11.01□□□□□ -0.65
CLK3-206ENST00000562078 RPL31P62899 125 aaKnown RBP11.01□□□□□ -0.65
CLK3-206ENST00000562078 SLAQ13239 276 aa11.01□□□□□ -0.65
CLK3-206ENST00000562078 NEGR1Q7Z3B1 354 aa11.01□□□□□ -0.65
CLK3-206ENST00000562078 LSM10Q969L4 123 aaKnown RBP11.01□□□□□ -0.65
CLK3-206ENST00000562078 JMJD8Q96S16 334 aa11.01□□□□□ -0.65
CLK3-206ENST00000562078 ST20Q9HBF5 79 aa11.01□□□□□ -0.65
CLK3-206ENST00000562078 THYN1Q9P016 225 aa11.01□□□□□ -0.65
CLK3-206ENST00000562078 MSRB2Q9Y3D2 182 aa11.01□□□□□ -0.65
CLK3-206ENST00000562078 TRGV5A0A0B4J1U4 118 aa11□□□□□ -0.65
CLK3-206ENST00000562078 J3KRW8 73 aa11□□□□□ -0.65
CLK3-206ENST00000562078 RAB9AP51151 201 aa11□□□□□ -0.65
CLK3-206ENST00000562078 OR10W1Q8NGF6 305 aa11□□□□□ -0.65
CLK3-206ENST00000562078 SPSB4Q96A44 273 aa11□□□□□ -0.65
CLK3-206ENST00000562078 RNASE7Q9H1E1 156 aaKnown RBP11□□□□□ -0.65
CLK3-206ENST00000562078 PLSCR4Q9NRQ2 329 aa11□□□□□ -0.65
CLK3-206ENST00000562078 YTHDF2Q9Y5A9 579 aaKnown RBP11□□□□□ -0.65
CLK3-206ENST00000562078 RRHO14718 337 aa11□□□□□ -0.65
CLK3-206ENST00000562078 APCSP02743 223 aa11□□□□□ -0.65
CLK3-206ENST00000562078 EDDM3BP56851 147 aa11□□□□□ -0.65
CLK3-206ENST00000562078 IGFL2Q6UWQ7 119 aa11□□□□□ -0.65
CLK3-206ENST00000562078 COLCA1Q6ZS62 124 aa11□□□□□ -0.65
CLK3-206ENST00000562078 STXBP6Q8NFX7 210 aa11□□□□□ -0.65
CLK3-206ENST00000562078 COMMD5Q9GZQ3 224 aa11□□□□□ -0.65
CLK3-206ENST00000562078 TECRQ9NZ01 308 aaKnown RBP11□□□□□ -0.65
CLK3-206ENST00000562078 APC2O95996 2303 aa11□□□□□ -0.65
CLK3-206ENST00000562078 DSPP15924 2871 aaKnown RBP11□□□□□ -0.65
CLK3-206ENST00000562078 TRAV26-1A0A087WT03 109 aa10.99□□□□□ -0.65
CLK3-206ENST00000562078 A0A1W2PPV4 95 aa10.99□□□□□ -0.65
CLK3-206ENST00000562078 CEACAM4O75871 244 aa10.99□□□□□ -0.65
CLK3-206ENST00000562078 RNASEKQ6P5S7 137 aaKnown RBP10.99□□□□□ -0.65
CLK3-206ENST00000562078 PCSK4Q6UW60 755 aa10.99□□□□□ -0.65
CLK3-206ENST00000562078 OR4A5Q8NH83 315 aa10.99□□□□□ -0.65
CLK3-206ENST00000562078 EAF1Q96JC9 268 aaPredicted RBP10.99□□□□□ -0.65
CLK3-206ENST00000562078 HS3ST6Q96QI5 342 aa10.99□□□□□ -0.65
CLK3-206ENST00000562078 OR2D2Q9H210 308 aa10.99□□□□□ -0.65
CLK3-206ENST00000562078 ACACAQ13085 2346 aa10.99□□□□□ -0.65
CLK3-206ENST00000562078 BOD1L1Q8NFC6 3051 aa10.99□□□□□ -0.65
CLK3-206ENST00000562078 TRAV17A0A0B4J275 112 aa10.99□□□□□ -0.65
CLK3-206ENST00000562078 PMS2P5A8MQ11 134 aa10.99□□□□□ -0.65
CLK3-206ENST00000562078 AMY1AP04745 511 aa10.99□□□□□ -0.65
CLK3-206ENST00000562078 ZNF585BQ52M93 769 aa10.99□□□□□ -0.65
CLK3-206ENST00000562078 GTF2H5Q6ZYL4 71 aa10.99□□□□□ -0.65
CLK3-206ENST00000562078 Q8N7P7 452 aa10.99□□□□□ -0.65
CLK3-206ENST00000562078 SPENQ96T58 3664 aaKnown RBP10.99□□□□□ -0.65
CLK3-206ENST00000562078 DMXL2Q8TDJ6 3036 aa10.98□□□□□ -0.65
CLK3-206ENST00000562078 SH2D7A6NKC9 451 aaPredicted RBP10.98□□□□□ -0.65
CLK3-206ENST00000562078 CRYBA4P53673 196 aa10.98□□□□□ -0.65
CLK3-206ENST00000562078 Q6ZS49 121 aa10.98□□□□□ -0.65
CLK3-206ENST00000562078 DOLPP1Q86YN1 238 aa10.98□□□□□ -0.65
CLK3-206ENST00000562078 SPACA3Q8IXA5 215 aa10.98□□□□□ -0.65
CLK3-206ENST00000562078 ZADH2Q8N4Q0 377 aa10.98□□□□□ -0.65
CLK3-206ENST00000562078 STPG3Q8N7X2 389 aa10.98□□□□□ -0.65
CLK3-206ENST00000562078 OR2T6Q8NHC8 308 aa10.98□□□□□ -0.65
CLK3-206ENST00000562078 CLCF1Q9UBD9 225 aa10.98□□□□□ -0.65
CLK3-206ENST00000562078 IL36RNQ9UBH0 155 aa10.98□□□□□ -0.65
CLK3-206ENST00000562078 CACNA1GO43497 2377 aa10.98□□□□□ -0.65
CLK3-206ENST00000562078 INTS1Q8N201 2190 aaKnown RBP10.98□□□□□ -0.65
CLK3-206ENST00000562078 HLA-DQA1P01909 254 aa10.98□□□□□ -0.65
CLK3-206ENST00000562078 UQCRFS1P47985 274 aa10.98□□□□□ -0.65
CLK3-206ENST00000562078 WDR82Q6UXN9 313 aa10.98□□□□□ -0.65
CLK3-206ENST00000562078 C20orf204Q6ZNR8 217 aa10.98□□□□□ -0.65
CLK3-206ENST00000562078 MRPL21Q7Z2W9 205 aaKnown RBP10.98□□□□□ -0.65
CLK3-206ENST00000562078 ZNF611Q8N823 705 aa10.98□□□□□ -0.65
CLK3-206ENST00000562078 TMEM70Q9BUB7 260 aa10.98□□□□□ -0.65
CLK3-206ENST00000562078 OR2W1Q9Y3N9 320 aa10.98□□□□□ -0.65
CLK3-206ENST00000562078 MGAQ8IWI9 3026 aa10.98□□□□□ -0.65
CLK3-206ENST00000562078 PRR14LQ5THK1 2151 aa10.97□□□□□ -0.65
CLK3-206ENST00000562078 ANKRD11Q6UB99 2663 aaPredicted RBP10.97□□□□□ -0.65
CLK3-206ENST00000562078 NGFP01138 241 aa10.97□□□□□ -0.65
CLK3-206ENST00000562078 CGAP01215 116 aa10.97□□□□□ -0.65
CLK3-206ENST00000562078 IGLV2-14P01704 120 aa10.97□□□□□ -0.65
CLK3-206ENST00000562078 SCGB1A1P11684 91 aa10.97□□□□□ -0.65
CLK3-206ENST00000562078 SPINK9Q5DT21 86 aa10.97□□□□□ -0.65
CLK3-206ENST00000562078 PRR31Q5SQ13 230 aa10.97□□□□□ -0.65
CLK3-206ENST00000562078 SNAI2O43623 268 aa10.97□□□□□ -0.65
CLK3-206ENST00000562078 SLC25A17O43808 307 aa10.97□□□□□ -0.65
CLK3-206ENST00000562078 CRYBB3P26998 211 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms