RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 SMDT1Q9H4I9 107 aa8.98□□□□□ -0.97
USP3-218ENST00000560202 TPSG1Q9NRR2 321 aa8.98□□□□□ -0.97
USP3-218ENST00000560202 FKBP11Q9NYL4 201 aa8.98□□□□□ -0.97
USP3-218ENST00000560202 OR51B2Q9Y5P1 312 aa8.98□□□□□ -0.97
USP3-218ENST00000560202 SOX21Q9Y651 276 aaPredicted RBP8.98□□□□□ -0.97
USP3-218ENST00000560202 CCDC168Q8NDH2 2452 aa8.98□□□□□ -0.97
USP3-218ENST00000560202 CEBPZOSA8MTT3 80 aa8.97□□□□□ -0.97
USP3-218ENST00000560202 RRHO14718 337 aa8.97□□□□□ -0.97
USP3-218ENST00000560202 FSHBP01225 129 aa8.97□□□□□ -0.97
USP3-218ENST00000560202 MYOD1P15172 320 aa8.97□□□□□ -0.97
USP3-218ENST00000560202 RAB5AP20339 215 aa8.97□□□□□ -0.97
USP3-218ENST00000560202 RPL12P30050 165 aaKnown RBP8.97□□□□□ -0.97
USP3-218ENST00000560202 MMDQ15546 238 aa8.97□□□□□ -0.97
USP3-218ENST00000560202 MRGPRG-AS1Q2M3A8 158 aa8.97□□□□□ -0.97
USP3-218ENST00000560202 SPINK9Q5DT21 86 aa8.97□□□□□ -0.97
USP3-218ENST00000560202 OR2C3Q8N628 320 aa8.97□□□□□ -0.97
USP3-218ENST00000560202 Q8N6K4 173 aa8.97□□□□□ -0.97
USP3-218ENST00000560202 NPBQ8NG41 125 aa8.97□□□□□ -0.97
USP3-218ENST00000560202 DTD1Q8TEA8 209 aa8.97□□□□□ -0.97
USP3-218ENST00000560202 ZDHHC16Q969W1 377 aa8.97□□□□□ -0.97
USP3-218ENST00000560202 ZNF430Q9H8G1 570 aaPredicted RBP8.97□□□□□ -0.97
USP3-218ENST00000560202 CYTL1Q9NRR1 136 aa8.97□□□□□ -0.97
USP3-218ENST00000560202 TCF19Q9Y242 345 aa8.97□□□□□ -0.97
USP3-218ENST00000560202 ZNF257Q9Y2Q1 563 aa8.97□□□□□ -0.97
USP3-218ENST00000560202 SIGLEC9Q9Y336 463 aa8.97□□□□□ -0.97
USP3-218ENST00000560202 WSB1Q9Y6I7 421 aa8.97□□□□□ -0.97
USP3-218ENST00000560202 ITPR3Q14573 2671 aa8.97□□□□□ -0.97
USP3-218ENST00000560202 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.97□□□□□ -0.973e-13■■■■□ 23
USP3-218ENST00000560202 TEX50A0A1B0GTY4 177 aa8.97□□□□□ -0.97
USP3-218ENST00000560202 FAM24AA6NFZ4 105 aa8.97□□□□□ -0.97
USP3-218ENST00000560202 NBR2O15453 112 aa8.97□□□□□ -0.97
USP3-218ENST00000560202 GPR137BO60478 399 aa8.97□□□□□ -0.97
USP3-218ENST00000560202 NDUFA3O95167 84 aa8.97□□□□□ -0.97
USP3-218ENST00000560202 OPN1MWP04001 364 aa8.97□□□□□ -0.97
USP3-218ENST00000560202 OPN1MW2P0DN77 364 aa8.97□□□□□ -0.97
USP3-218ENST00000560202 OPN1MW3P0DN78 364 aa8.97□□□□□ -0.97
USP3-218ENST00000560202 TMEM11P17152 192 aa8.97□□□□□ -0.97
USP3-218ENST00000560202 SULT1A2P50226 295 aa8.97□□□□□ -0.97
USP3-218ENST00000560202 PPT1P50897 306 aa8.97□□□□□ -0.97
USP3-218ENST00000560202 DYNLT3P51808 116 aa8.97□□□□□ -0.97
USP3-218ENST00000560202 TAS2R30P59541 319 aa8.97□□□□□ -0.97
USP3-218ENST00000560202 RPL23AP62750 156 aaKnown RBP8.97□□□□□ -0.97
USP3-218ENST00000560202 PRSS8Q16651 343 aa8.97□□□□□ -0.97
USP3-218ENST00000560202 RBMS3Q6XE24 437 aaKnown RBP8.97□□□□□ -0.97
USP3-218ENST00000560202 PPP1R27Q86WC6 154 aa8.97□□□□□ -0.97
USP3-218ENST00000560202 MMD2Q8IY49 270 aa8.97□□□□□ -0.97
USP3-218ENST00000560202 OR5B3Q8NH48 314 aa8.97□□□□□ -0.97
USP3-218ENST00000560202 LYPD6BQ8NI32 183 aa8.97□□□□□ -0.97
USP3-218ENST00000560202 COMMD5Q9GZQ3 224 aa8.97□□□□□ -0.97
USP3-218ENST00000560202 FBXL15Q9H469 300 aa8.97□□□□□ -0.97
USP3-218ENST00000560202 LYRM2Q9NU23 88 aaPredicted RBP8.97□□□□□ -0.97
USP3-218ENST00000560202 PSENENQ9NZ42 101 aa8.97□□□□□ -0.97
USP3-218ENST00000560202 KIAA1456Q9P272 454 aa8.97□□□□□ -0.97
USP3-218ENST00000560202 ZANQ9Y493 2812 aa8.96□□□□□ -0.97
USP3-218ENST00000560202 CLN5O75503 358 aa8.96□□□□□ -0.98
USP3-218ENST00000560202 AKR1C1Q04828 323 aa8.96□□□□□ -0.98
USP3-218ENST00000560202 PLGLAQ15195 96 aa8.96□□□□□ -0.98
USP3-218ENST00000560202 BTNL8Q6UX41 500 aa8.96□□□□□ -0.98
USP3-218ENST00000560202 CIB3Q96Q77 187 aaPredicted RBP8.96□□□□□ -0.98
USP3-218ENST00000560202 PFDN5Q99471 154 aa8.96□□□□□ -0.98
USP3-218ENST00000560202 HINT2Q9BX68 163 aa8.96□□□□□ -0.98
USP3-218ENST00000560202 CREBBPQ92793 2442 aa8.96□□□□□ -0.98
USP3-218ENST00000560202 NCBP2LA6PVI3 153 aaKnown RBP8.95□□□□□ -0.98
USP3-218ENST00000560202 H3BP45 60 aa8.95□□□□□ -0.98
USP3-218ENST00000560202 LY86O95711 162 aa8.95□□□□□ -0.98
USP3-218ENST00000560202 OR8U8P0C7N1 319 aa8.95□□□□□ -0.98
USP3-218ENST00000560202 S100A2P29034 98 aa8.95□□□□□ -0.98
USP3-218ENST00000560202 VDAC2P45880 294 aaPredicted RBP8.95□□□□□ -0.98
USP3-218ENST00000560202 PRCDQ00LT1 54 aa8.95□□□□□ -0.98
USP3-218ENST00000560202 KRTAP1-1Q07627 177 aa8.95□□□□□ -0.98
USP3-218ENST00000560202 TMEM252Q8N6L7 170 aa8.95□□□□□ -0.98
USP3-218ENST00000560202 OR1L8Q8NGR8 309 aa8.95□□□□□ -0.98
USP3-218ENST00000560202 PIFOQ8TCI5 191 aa8.95□□□□□ -0.98
USP3-218ENST00000560202 TMED6Q8WW62 240 aa8.95□□□□□ -0.98
USP3-218ENST00000560202 CLCC1Q96S66 551 aa8.95□□□□□ -0.98
USP3-218ENST00000560202 SSX3Q99909 188 aa8.95□□□□□ -0.98
USP3-218ENST00000560202 SLC25A31Q9H0C2 315 aa8.95□□□□□ -0.98
USP3-218ENST00000560202 ZNF469Q96JG9 3925 aaPredicted RBP8.95□□□□□ -0.98
USP3-218ENST00000560202 CELSR1Q9NYQ6 3014 aa8.94□□□□□ -0.98
USP3-218ENST00000560202 IGSF23A1L1A6 192 aa8.94□□□□□ -0.98
USP3-218ENST00000560202 FCN1O00602 326 aa8.94□□□□□ -0.98
USP3-218ENST00000560202 CD5LO43866 347 aa8.94□□□□□ -0.98
USP3-218ENST00000560202 ACTL6BO94805 426 aa8.94□□□□□ -0.98
USP3-218ENST00000560202 BTF3P20290 206 aaKnown RBP8.94□□□□□ -0.98
USP3-218ENST00000560202 HOXA5P20719 270 aa8.94□□□□□ -0.98
USP3-218ENST00000560202 CDX1P47902 265 aaPredicted RBP8.94□□□□□ -0.98
USP3-218ENST00000560202 SRSF3P84103 164 aaKnown RBP8.94□□□□□ -0.98
USP3-218ENST00000560202 EWSR1Q01844 656 aaKnown RBP eCLIP8.94□□□□□ -0.98
USP3-218ENST00000560202 TNXAQ16473 311 aa8.94□□□□□ -0.98
USP3-218ENST00000560202 C5orf64Q2M2E5 130 aa8.94□□□□□ -0.98
USP3-218ENST00000560202 LRRC75BQ2VPJ9 315 aa8.94□□□□□ -0.98
USP3-218ENST00000560202 SPANXN5Q5MJ07 72 aa8.94□□□□□ -0.98
USP3-218ENST00000560202 C10orf55Q5SWW7 151 aa8.94□□□□□ -0.98
USP3-218ENST00000560202 CLEC9AQ6UXN8 241 aa8.94□□□□□ -0.98
USP3-218ENST00000560202 C9orf139Q6ZV77 190 aa8.94□□□□□ -0.98
USP3-218ENST00000560202 BCL6BQ8N143 479 aaPredicted RBP8.94□□□□□ -0.98
USP3-218ENST00000560202 C22orf15Q8WYQ4 148 aa8.94□□□□□ -0.98
USP3-218ENST00000560202 GGACTQ9BVM4 153 aa8.94□□□□□ -0.98
USP3-218ENST00000560202 HIPK2Q9H2X6 1198 aa8.94□□□□□ -0.98
USP3-218ENST00000560202 PLEKHA3Q9HB20 300 aa8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms