RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 CXorf65A6NEN9 183 aa8.23□□□□□ -1.09
CCDC88C-213ENST00000557455 K7EMT4 169 aa8.23□□□□□ -1.09
CCDC88C-213ENST00000557455 SPRY2O43597 315 aa8.23□□□□□ -1.09
CCDC88C-213ENST00000557455 ZNF207O43670 478 aaKnown RBP8.23□□□□□ -1.09
CCDC88C-213ENST00000557455 NAT1P18440 290 aa8.23□□□□□ -1.09
CCDC88C-213ENST00000557455 PRSS3P35030 304 aa8.23□□□□□ -1.09
CCDC88C-213ENST00000557455 BMI1P35226 326 aa8.23□□□□□ -1.09
CCDC88C-213ENST00000557455 RPS19P39019 145 aaKnown RBP8.23□□□□□ -1.09
CCDC88C-213ENST00000557455 PMS2P11Q13670 270 aa8.23□□□□□ -1.09
CCDC88C-213ENST00000557455 DEFB135Q30KP9 77 aa8.23□□□□□ -1.09
CCDC88C-213ENST00000557455 Q56UQ5 140 aa8.23□□□□□ -1.09
CCDC88C-213ENST00000557455 Q6ZWC4 215 aa8.23□□□□□ -1.09
CCDC88C-213ENST00000557455 WFDC3Q8IUB2 231 aa8.23□□□□□ -1.09
CCDC88C-213ENST00000557455 TSC22D3Q99576 134 aa8.23□□□□□ -1.09
CCDC88C-213ENST00000557455 FXYD6Q9H0Q3 95 aa8.23□□□□□ -1.09
CCDC88C-213ENST00000557455 FKBP11Q9NYL4 201 aa8.23□□□□□ -1.09
CCDC88C-213ENST00000557455 PRNDQ9UKY0 176 aa8.23□□□□□ -1.09
CCDC88C-213ENST00000557455 OR4C46A6NHA9 309 aa8.22□□□□□ -1.09
CCDC88C-213ENST00000557455 F8W735 103 aaPredicted RBP8.22□□□□□ -1.09
CCDC88C-213ENST00000557455 K7EIM0 57 aa8.22□□□□□ -1.09
CCDC88C-213ENST00000557455 UBE2CO00762 179 aa8.22□□□□□ -1.09
CCDC88C-213ENST00000557455 HLA-DMAP28067 261 aa8.22□□□□□ -1.09
CCDC88C-213ENST00000557455 S100GP29377 79 aa8.22□□□□□ -1.09
CCDC88C-213ENST00000557455 ADMP35318 185 aa8.22□□□□□ -1.09
CCDC88C-213ENST00000557455 HRH1P35367 487 aa8.22□□□□□ -1.09
CCDC88C-213ENST00000557455 TSPAN5P62079 268 aa8.22□□□□□ -1.09
CCDC88C-213ENST00000557455 LSM3P62310 102 aaKnown RBP8.22□□□□□ -1.09
CCDC88C-213ENST00000557455 TNFRSF9Q07011 255 aa8.22□□□□□ -1.09
CCDC88C-213ENST00000557455 ODF3L2Q3SX64 289 aa8.22□□□□□ -1.09
CCDC88C-213ENST00000557455 PHLDA2Q53GA4 152 aa8.22□□□□□ -1.09
CCDC88C-213ENST00000557455 LPCAT3Q6P1A2 487 aa8.22□□□□□ -1.09
CCDC88C-213ENST00000557455 LYG2Q86SG7 212 aa8.22□□□□□ -1.09
CCDC88C-213ENST00000557455 STPG3Q8N7X2 389 aa8.22□□□□□ -1.09
CCDC88C-213ENST00000557455 OR5B3Q8NH48 314 aa8.22□□□□□ -1.09
CCDC88C-213ENST00000557455 KIR2DL5BA0A0G2JN68 375 aa8.21□□□□□ -1.1
CCDC88C-213ENST00000557455 KIR2DL5BA0A0G2JPC4 375 aa8.21□□□□□ -1.1
CCDC88C-213ENST00000557455 NUPR2A6NF83 97 aa8.21□□□□□ -1.1
CCDC88C-213ENST00000557455 CCDC160A6NGH7 325 aa8.21□□□□□ -1.1
CCDC88C-213ENST00000557455 DBX1A6NMT0 343 aa8.21□□□□□ -1.1
CCDC88C-213ENST00000557455 C15orf61A6NNL5 157 aa8.21□□□□□ -1.1
CCDC88C-213ENST00000557455 C15orf62A8K5M9 175 aa8.21□□□□□ -1.1
CCDC88C-213ENST00000557455 LY6G6CO95867 125 aa8.21□□□□□ -1.1
CCDC88C-213ENST00000557455 CTSDP07339 412 aaPredicted RBP8.21□□□□□ -1.1
CCDC88C-213ENST00000557455 CTSGP08311 255 aa8.21□□□□□ -1.1
CCDC88C-213ENST00000557455 ALDH3B2P48448 385 aa8.21□□□□□ -1.1
CCDC88C-213ENST00000557455 RELQ04864 619 aaPredicted RBP8.21□□□□□ -1.1
CCDC88C-213ENST00000557455 GPR141Q7Z602 305 aa8.21□□□□□ -1.1
CCDC88C-213ENST00000557455 LYSMD2Q8IV50 215 aa8.21□□□□□ -1.1
CCDC88C-213ENST00000557455 KIR2DL5AQ8N109 375 aa8.21□□□□□ -1.1
CCDC88C-213ENST00000557455 OR1P1Q8NH06 330 aa8.21□□□□□ -1.1
CCDC88C-213ENST00000557455 OR4A16Q8NH70 328 aa8.21□□□□□ -1.1
CCDC88C-213ENST00000557455 KIR2DL5BQ8NHK3 375 aa8.21□□□□□ -1.1
CCDC88C-213ENST00000557455 LINC00476Q8WZB0 136 aa8.21□□□□□ -1.1
CCDC88C-213ENST00000557455 TMEM14BQ9NUH8 114 aa8.21□□□□□ -1.1
CCDC88C-213ENST00000557455 NUPL2O15504 423 aaKnown RBP8.2□□□□□ -1.1
CCDC88C-213ENST00000557455 NOL3O60936 208 aaKnown RBP8.2□□□□□ -1.1
CCDC88C-213ENST00000557455 YIF1AO95070 293 aa8.2□□□□□ -1.1
CCDC88C-213ENST00000557455 RPL35AP18077 110 aaKnown RBP8.2□□□□□ -1.1
CCDC88C-213ENST00000557455 MFAP4P55083 255 aa8.2□□□□□ -1.1
CCDC88C-213ENST00000557455 EWSR1Q01844 656 aaKnown RBP eCLIP8.2□□□□□ -1.1
CCDC88C-213ENST00000557455 H2BFWTQ7Z2G1 175 aa8.2□□□□□ -1.1
CCDC88C-213ENST00000557455 TBC1D26Q86UD7 250 aa8.2□□□□□ -1.1
CCDC88C-213ENST00000557455 GPX8Q8TED1 209 aa8.2□□□□□ -1.1
CCDC88C-213ENST00000557455 SLC25A46Q96AG3 418 aa8.2□□□□□ -1.1
CCDC88C-213ENST00000557455 RNF183Q96D59 192 aa8.2□□□□□ -1.1
CCDC88C-213ENST00000557455 YIPF6Q96EC8 236 aa8.2□□□□□ -1.1
CCDC88C-213ENST00000557455 MISP3Q96FF7 219 aa8.2□□□□□ -1.1
CCDC88C-213ENST00000557455 GALNT14Q96FL9 552 aa8.2□□□□□ -1.1
CCDC88C-213ENST00000557455 RNF2Q99496 336 aa8.2□□□□□ -1.1
CCDC88C-213ENST00000557455 C6orf62Q9GZU0 229 aaPredicted RBP8.2□□□□□ -1.1
CCDC88C-213ENST00000557455 FAM212BQ9NTI7 297 aaPredicted RBP8.2□□□□□ -1.1
CCDC88C-213ENST00000557455 COMMD3Q9UBI1 195 aa8.2□□□□□ -1.1
CCDC88C-213ENST00000557455 SMPXQ9UHP9 88 aa8.2□□□□□ -1.1
CCDC88C-213ENST00000557455 IGHV7-4-1A0A0J9YVY3 117 aa8.19□□□□□ -1.1
CCDC88C-213ENST00000557455 CHEK1O14757 476 aa8.19□□□□□ -1.1
CCDC88C-213ENST00000557455 EIF4EP06730 217 aaKnown RBP8.19□□□□□ -1.1
CCDC88C-213ENST00000557455 FCGR2BP31994 310 aaPredicted RBP8.19□□□□□ -1.1
CCDC88C-213ENST00000557455 APRG1Q8IVJ8 170 aa8.19□□□□□ -1.1
CCDC88C-213ENST00000557455 TMEM217Q8N7C4 229 aa8.19□□□□□ -1.1
CCDC88C-213ENST00000557455 TMEM116Q8NCL8 245 aa8.19□□□□□ -1.1
CCDC88C-213ENST00000557455 SEC22AQ96IW7 307 aa8.19□□□□□ -1.1
CCDC88C-213ENST00000557455 CMTM3Q96MX0 182 aa8.19□□□□□ -1.1
CCDC88C-213ENST00000557455 TXN2Q99757 166 aa8.19□□□□□ -1.1
CCDC88C-213ENST00000557455 RHPN1-AS1Q9BWJ2 59 aa8.19□□□□□ -1.1
CCDC88C-213ENST00000557455 MAP6D1Q9H9H5 199 aa8.19□□□□□ -1.1
CCDC88C-213ENST00000557455 KLK5Q9Y337 293 aaPredicted RBP8.19□□□□□ -1.1
CCDC88C-213ENST00000557455 KMT2AQ03164 3969 aa8.18□□□□□ -1.1
CCDC88C-213ENST00000557455 IGHV3-49A0A0A0MS15 119 aa8.18□□□□□ -1.1
CCDC88C-213ENST00000557455 TRAV14DV4A0A0A6YYC5 116 aa8.18□□□□□ -1.1
CCDC88C-213ENST00000557455 I3L2K1 104 aa8.18□□□□□ -1.1
CCDC88C-213ENST00000557455 GNG7O60262 68 aa8.18□□□□□ -1.1
CCDC88C-213ENST00000557455 MT-CO2P00403 227 aa8.18□□□□□ -1.1
CCDC88C-213ENST00000557455 IGKV1-39P01597 117 aa8.18□□□□□ -1.1
CCDC88C-213ENST00000557455 APOA1P02647 267 aa8.18□□□□□ -1.1
CCDC88C-213ENST00000557455 IGKV1D-39P04432 117 aa8.18□□□□□ -1.1
CCDC88C-213ENST00000557455 ATF4P18848 351 aaPredicted RBP8.18□□□□□ -1.1
CCDC88C-213ENST00000557455 RCVRNP35243 200 aa8.18□□□□□ -1.1
CCDC88C-213ENST00000557455 TFPI2P48307 235 aa8.18□□□□□ -1.1
CCDC88C-213ENST00000557455 CMC4P56277 68 aaPredicted RBP8.18□□□□□ -1.1
CCDC88C-213ENST00000557455 ERHP84090 104 aaKnown RBP8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms