RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 PRR13Q9NZ81 148 aa10.49□□□□□ -0.73
SHMT2-228ENST00000557302 FBXL7Q9UJT9 491 aa10.49□□□□□ -0.73
SHMT2-228ENST00000557302 KLK9Q9UKQ9 250 aa10.49□□□□□ -0.73
SHMT2-228ENST00000557302 IGLV11-55A0A075B6I3 123 aa10.48□□□□□ -0.73
SHMT2-228ENST00000557302 PIGBOS1A0A0B4J2F0 54 aa10.48□□□□□ -0.73
SHMT2-228ENST00000557302 PLA2G10O15496 165 aa10.48□□□□□ -0.73
SHMT2-228ENST00000557302 ST8SIA3O43173 380 aa10.48□□□□□ -0.73
SHMT2-228ENST00000557302 LYRM1O43325 122 aa10.48□□□□□ -0.73
SHMT2-228ENST00000557302 IFNA17P01571 189 aa10.48□□□□□ -0.73
SHMT2-228ENST00000557302 UBE2MP61081 183 aaKnown RBP10.48□□□□□ -0.73
SHMT2-228ENST00000557302 SLC35G3Q8N808 338 aa10.48□□□□□ -0.73
SHMT2-228ENST00000557302 GPR61Q9BZJ8 451 aa10.48□□□□□ -0.73
SHMT2-228ENST00000557302 PLEKHA3Q9HB20 300 aa10.48□□□□□ -0.73
SHMT2-228ENST00000557302 PEF1Q9UBV8 284 aaKnown RBP10.48□□□□□ -0.73
SHMT2-228ENST00000557302 A0A0B4J2A0 478 aa10.47□□□□□ -0.73
SHMT2-228ENST00000557302 NDUFB8O95169 186 aa10.47□□□□□ -0.73
SHMT2-228ENST00000557302 SFT2D2O95562 160 aa10.47□□□□□ -0.73
SHMT2-228ENST00000557302 ZP3P21754 424 aa10.47□□□□□ -0.73
SHMT2-228ENST00000557302 SLURP1P55000 103 aa10.47□□□□□ -0.73
SHMT2-228ENST00000557302 PPP1R1AQ13522 171 aa10.47□□□□□ -0.73
SHMT2-228ENST00000557302 FAM209BQ5JX69 171 aa10.47□□□□□ -0.73
SHMT2-228ENST00000557302 Q6ZRM9 215 aa10.47□□□□□ -0.73
SHMT2-228ENST00000557302 OR2C3Q8N628 320 aa10.47□□□□□ -0.73
SHMT2-228ENST00000557302 OR1L6Q8NGR2 347 aa10.47□□□□□ -0.73
SHMT2-228ENST00000557302 DCUN1D4Q92564 292 aa10.47□□□□□ -0.73
SHMT2-228ENST00000557302 GPR146Q96CH1 333 aa10.47□□□□□ -0.73
SHMT2-228ENST00000557302 CTNNBIP1Q9NSA3 81 aaPredicted RBP10.47□□□□□ -0.73
SHMT2-228ENST00000557302 THYN1Q9P016 225 aa10.47□□□□□ -0.73
SHMT2-228ENST00000557302 CACNG5Q9UF02 275 aa10.47□□□□□ -0.73
SHMT2-228ENST00000557302 SHPKQ9UHJ6 478 aa10.47□□□□□ -0.73
SHMT2-228ENST00000557302 FLVCR2Q9UPI3 526 aa10.47□□□□□ -0.73
SHMT2-228ENST00000557302 F11RQ9Y624 299 aaKnown RBP10.47□□□□□ -0.73
SHMT2-228ENST00000557302 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP10.46□□□□□ -0.73
SHMT2-228ENST00000557302 WIPF1O43516 503 aa10.46□□□□□ -0.73
SHMT2-228ENST00000557302 SULT1A3P0DMM9 295 aa10.46□□□□□ -0.73
SHMT2-228ENST00000557302 SULT1A4P0DMN0 295 aa10.46□□□□□ -0.73
SHMT2-228ENST00000557302 HOXD3P31249 432 aaPredicted RBP10.46□□□□□ -0.73
SHMT2-228ENST00000557302 HOXA1P49639 335 aaPredicted RBP10.46□□□□□ -0.73
SHMT2-228ENST00000557302 ERHP84090 104 aaKnown RBP10.46□□□□□ -0.73
SHMT2-228ENST00000557302 BEAN1Q3B7T3 259 aa10.46□□□□□ -0.73
SHMT2-228ENST00000557302 AARDQ4LEZ3 155 aa10.46□□□□□ -0.73
SHMT2-228ENST00000557302 SPINK9Q5DT21 86 aa10.46□□□□□ -0.73
SHMT2-228ENST00000557302 SLC25A24Q6NUK1 477 aa10.46□□□□□ -0.73
SHMT2-228ENST00000557302 LYZL2Q7Z4W2 148 aa10.46□□□□□ -0.73
SHMT2-228ENST00000557302 OR1P1Q8NH06 330 aa10.46□□□□□ -0.73
SHMT2-228ENST00000557302 DLX4Q92988 240 aaPredicted RBP10.46□□□□□ -0.73
SHMT2-228ENST00000557302 EEF1AKMT3Q96AZ1 226 aa10.46□□□□□ -0.73
SHMT2-228ENST00000557302 CXorf58Q96LI9 332 aa10.46□□□□□ -0.73
SHMT2-228ENST00000557302 ENY2Q9NPA8 101 aa10.46□□□□□ -0.73
SHMT2-228ENST00000557302 DMRT1Q9Y5R6 373 aa10.46□□□□□ -0.73
SHMT2-228ENST00000557302 DUXBA0A1W2PPF3 345 aa10.45□□□□□ -0.74
SHMT2-228ENST00000557302 SEC14L6B5MCN3 397 aa10.45□□□□□ -0.74
SHMT2-228ENST00000557302 OVOL1O14753 267 aa10.45□□□□□ -0.74
SHMT2-228ENST00000557302 TRBV12-3P01733 135 aa10.45□□□□□ -0.74
SHMT2-228ENST00000557302 SPCS3P61009 180 aa10.45□□□□□ -0.74
SHMT2-228ENST00000557302 ANKRD55Q3KP44 614 aa10.45□□□□□ -0.74
SHMT2-228ENST00000557302 NMSQ5H8A3 153 aa10.45□□□□□ -0.74
SHMT2-228ENST00000557302 KPRPQ5T749 579 aaPredicted RBP10.45□□□□□ -0.74
SHMT2-228ENST00000557302 OR52E5Q8NH55 327 aa10.45□□□□□ -0.74
SHMT2-228ENST00000557302 CACFD1Q9UGQ2 172 aa10.45□□□□□ -0.74
SHMT2-228ENST00000557302 S4R3C0 116 aa10.45□□□□□ -0.74
SHMT2-228ENST00000557302 TRBV7-1A0A0A6YYK4 115 aa10.44□□□□□ -0.74
SHMT2-228ENST00000557302 MFSD2BA6NFX1 497 aa10.44□□□□□ -0.74
SHMT2-228ENST00000557302 INS-IGF2F8WCM5 200 aa10.44□□□□□ -0.74
SHMT2-228ENST00000557302 UPK1BO75841 260 aa10.44□□□□□ -0.74
SHMT2-228ENST00000557302 IGHV3-23P01764 117 aa10.44□□□□□ -0.74
SHMT2-228ENST00000557302 HLA-AP01891 365 aaKnown RBP10.44□□□□□ -0.74
SHMT2-228ENST00000557302 ANXA7P20073 488 aaKnown RBP10.44□□□□□ -0.74
SHMT2-228ENST00000557302 SNCAP37840 140 aa10.44□□□□□ -0.74
SHMT2-228ENST00000557302 MFAP2P55001 183 aa10.44□□□□□ -0.74
SHMT2-228ENST00000557302 ASAH1Q13510 395 aa10.44□□□□□ -0.74
SHMT2-228ENST00000557302 SMCO1Q147U7 214 aa10.44□□□□□ -0.74
SHMT2-228ENST00000557302 RPEL1Q2QD12 228 aa10.44□□□□□ -0.74
SHMT2-228ENST00000557302 C4orf46Q504U0 113 aa10.44□□□□□ -0.74
SHMT2-228ENST00000557302 C9orf66Q5T8R8 295 aa10.44□□□□□ -0.74
SHMT2-228ENST00000557302 MZT2BQ6NZ67 158 aa10.44□□□□□ -0.74
SHMT2-228ENST00000557302 LRTM2Q8N967 370 aa10.44□□□□□ -0.74
SHMT2-228ENST00000557302 ZNF114Q8NC26 417 aa10.44□□□□□ -0.74
SHMT2-228ENST00000557302 VN1R17PQ8TDU5 208 aa10.44□□□□□ -0.74
SHMT2-228ENST00000557302 CCDC140Q96MF4 163 aa10.44□□□□□ -0.74
SHMT2-228ENST00000557302 C20orf85Q9H1P6 137 aa10.44□□□□□ -0.74
SHMT2-228ENST00000557302 PLA2G2EQ9NZK7 142 aa10.44□□□□□ -0.74
SHMT2-228ENST00000557302 TBC1D24Q9ULP9 559 aa10.44□□□□□ -0.74
SHMT2-228ENST00000557302 FAM240BA0A1B0GVZ2 78 aa10.43□□□□□ -0.74
SHMT2-228ENST00000557302 C9orf170A2RU37 121 aa10.43□□□□□ -0.74
SHMT2-228ENST00000557302 BMPR1BO00238 502 aa10.43□□□□□ -0.74
SHMT2-228ENST00000557302 TCRBP04435 133 aa10.43□□□□□ -0.74
SHMT2-228ENST00000557302 OR4E1P0C645 316 aa10.43□□□□□ -0.74
SHMT2-228ENST00000557302 DEFA6Q01524 100 aa10.43□□□□□ -0.74
SHMT2-228ENST00000557302 DHRS2Q13268 280 aa10.43□□□□□ -0.74
SHMT2-228ENST00000557302 KLF5Q13887 457 aaPredicted RBP10.43□□□□□ -0.74
SHMT2-228ENST00000557302 CLEC19AQ6UXS0 136 aa10.43□□□□□ -0.74
SHMT2-228ENST00000557302 LYG2Q86SG7 212 aa10.43□□□□□ -0.74
SHMT2-228ENST00000557302 ZNF502Q8TBZ5 544 aa10.43□□□□□ -0.74
SHMT2-228ENST00000557302 TMED3Q9Y3Q3 217 aa10.43□□□□□ -0.74
SHMT2-228ENST00000557302 TGP01266 2768 aa10.43□□□□□ -0.74
SHMT2-228ENST00000557302 A0A1B0GU03 582 aa10.42□□□□□ -0.74
SHMT2-228ENST00000557302 CEBPZOSA8MTT3 80 aa10.42□□□□□ -0.74
SHMT2-228ENST00000557302 PPP5D1E7EU14 171 aa10.42□□□□□ -0.74
SHMT2-228ENST00000557302 ARL3P36405 182 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms