RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 KDF1Q8NAX2 398 aaPredicted RBP10.03□□□□□ -0.8
CCDC88C-211ENST00000556726 MRPL20Q9BYC9 149 aaKnown RBP10.03□□□□□ -0.8
CCDC88C-211ENST00000556726 MRPL18Q9H0U6 180 aaKnown RBP10.03□□□□□ -0.8
CCDC88C-211ENST00000556726 LRRC10Q5BKY1 277 aa10.03□□□□□ -0.8
CCDC88C-211ENST00000556726 LINC01551Q86U37 167 aa10.03□□□□□ -0.8
CCDC88C-211ENST00000556726 C11orf1Q9H5F2 150 aa10.03□□□□□ -0.8
CCDC88C-211ENST00000556726 TRAV1-1A0A0B4J248 108 aa10.02□□□□□ -0.8
CCDC88C-211ENST00000556726 A0A1B0GW64 132 aa10.02□□□□□ -0.8
CCDC88C-211ENST00000556726 IFITM10A6NMD0 228 aa10.02□□□□□ -0.8
CCDC88C-211ENST00000556726 SRRM5B3KS81 715 aa10.02□□□□□ -0.8
CCDC88C-211ENST00000556726 K7EM74 188 aa10.02□□□□□ -0.8
CCDC88C-211ENST00000556726 CSN3P07498 182 aa10.02□□□□□ -0.8
CCDC88C-211ENST00000556726 PYYP10082 97 aa10.02□□□□□ -0.8
CCDC88C-211ENST00000556726 CD24P25063 80 aa10.02□□□□□ -0.8
CCDC88C-211ENST00000556726 GLRXP35754 106 aa10.02□□□□□ -0.8
CCDC88C-211ENST00000556726 RND2P52198 227 aa10.02□□□□□ -0.8
CCDC88C-211ENST00000556726 TCTAP57738 103 aa10.02□□□□□ -0.8
CCDC88C-211ENST00000556726 LEMD1Q68G75 181 aa10.02□□□□□ -0.8
CCDC88C-211ENST00000556726 TGIF2LXQ8IUE1 241 aa10.02□□□□□ -0.8
CCDC88C-211ENST00000556726 CORO2AQ92828 525 aa10.02□□□□□ -0.8
CCDC88C-211ENST00000556726 LINC00479Q96M42 142 aa10.02□□□□□ -0.8
CCDC88C-211ENST00000556726 GP6Q9HCN6 339 aa10.02□□□□□ -0.8
CCDC88C-211ENST00000556726 TECRQ9NZ01 308 aaKnown RBP10.02□□□□□ -0.8
CCDC88C-211ENST00000556726 ZNF729A6NN14 1252 aaPredicted RBP10.02□□□□□ -0.81
CCDC88C-211ENST00000556726 C16orf97H3BN30 126 aa10.02□□□□□ -0.81
CCDC88C-211ENST00000556726 IGKV3-15P01624 115 aa10.02□□□□□ -0.81
CCDC88C-211ENST00000556726 EFNB3Q15768 340 aa10.02□□□□□ -0.81
CCDC88C-211ENST00000556726 MSMPQ1L6U9 139 aa10.02□□□□□ -0.81
CCDC88C-211ENST00000556726 RNASEKQ6P5S7 137 aaKnown RBP10.02□□□□□ -0.81
CCDC88C-211ENST00000556726 BORCS7Q96B45 105 aa10.02□□□□□ -0.81
CCDC88C-211ENST00000556726 YTHDF2Q9Y5A9 579 aaKnown RBP10.02□□□□□ -0.81
CCDC88C-211ENST00000556726 MFAP2P55001 183 aa10.02□□□□□ -0.81
CCDC88C-211ENST00000556726 LYZP61626 148 aa10.02□□□□□ -0.81
CCDC88C-211ENST00000556726 C1orf185Q5T7R7 199 aa10.02□□□□□ -0.81
CCDC88C-211ENST00000556726 MMD2Q8IY49 270 aa10.02□□□□□ -0.81
CCDC88C-211ENST00000556726 FAM19A2Q8N3H0 131 aa10.02□□□□□ -0.81
CCDC88C-211ENST00000556726 OR2D3Q8NGH3 330 aa10.02□□□□□ -0.81
CCDC88C-211ENST00000556726 ONECUT1Q9UBC0 465 aa10.02□□□□□ -0.81
CCDC88C-211ENST00000556726 MAP1AP78559 2803 aaPredicted RBP10.02□□□□□ -0.81
CCDC88C-211ENST00000556726 IGHV3-35A0A0C4DH35 117 aa10.01□□□□□ -0.81
CCDC88C-211ENST00000556726 KBTBD11-OT1A0A1B0GTJ5 212 aa10.01□□□□□ -0.81
CCDC88C-211ENST00000556726 HSBP1O75506 76 aa10.01□□□□□ -0.81
CCDC88C-211ENST00000556726 ADMP35318 185 aa10.01□□□□□ -0.81
CCDC88C-211ENST00000556726 TPPP2P59282 170 aa10.01□□□□□ -0.81
CCDC88C-211ENST00000556726 HLA-DRB5Q30154 266 aa10.01□□□□□ -0.81
CCDC88C-211ENST00000556726 KRTCAP3Q53RY4 240 aa10.01□□□□□ -0.81
CCDC88C-211ENST00000556726 SEBOXQ9HB31 216 aaPredicted RBP10.01□□□□□ -0.81
CCDC88C-211ENST00000556726 IDI2-AS1Q9NZ38 188 aa10.01□□□□□ -0.81
CCDC88C-211ENST00000556726 PRNDQ9UKY0 176 aa10.01□□□□□ -0.81
CCDC88C-211ENST00000556726 TIMM9Q9Y5J7 89 aa10.01□□□□□ -0.81
CCDC88C-211ENST00000556726 KIAA1549Q9HCM3 1950 aa10.01□□□□□ -0.81
CCDC88C-211ENST00000556726 ACACBO00763 2458 aa10.01□□□□□ -0.81
CCDC88C-211ENST00000556726 RBFOX2O43251 390 aaKnown RBP eCLIP10.01□□□□□ -0.81
CCDC88C-211ENST00000556726 GFRA3O60609 400 aa10.01□□□□□ -0.81
CCDC88C-211ENST00000556726 SAA1P0DJI8 122 aaPredicted RBP10.01□□□□□ -0.81
CCDC88C-211ENST00000556726 GPX4P36969 197 aaPredicted RBP10.01□□□□□ -0.81
CCDC88C-211ENST00000556726 C19orf35Q6ZS72 473 aa10.01□□□□□ -0.81
CCDC88C-211ENST00000556726 VAMP8Q9BV40 100 aa10.01□□□□□ -0.81
CCDC88C-211ENST00000556726 ZNF355PQ9NSJ1 428 aa10.01□□□□□ -0.81
CCDC88C-211ENST00000556726 CFAP47Q6ZTR5 3102 aa10.01□□□□□ -0.81
CCDC88C-211ENST00000556726 TRBV24-1A0A075B6N3 115 aa10.01□□□□□ -0.81
CCDC88C-211ENST00000556726 PPIAL4EA0A075B759 164 aa10.01□□□□□ -0.81
CCDC88C-211ENST00000556726 PPIAL4DF5H284 164 aa10.01□□□□□ -0.81
CCDC88C-211ENST00000556726 PPIAL4FP0DN26 164 aa10.01□□□□□ -0.81
CCDC88C-211ENST00000556726 CD40P25942 277 aa10.01□□□□□ -0.81
CCDC88C-211ENST00000556726 IGFBPL1Q8WX77 278 aa10.01□□□□□ -0.81
CCDC88C-211ENST00000556726 SPRY4Q9C004 299 aa10.01□□□□□ -0.81
CCDC88C-211ENST00000556726 GAL3ST2Q9H3Q3 398 aa10.01□□□□□ -0.81
CCDC88C-211ENST00000556726 ZNF586Q9NXT0 402 aa10.01□□□□□ -0.81
CCDC88C-211ENST00000556726 PPIAL4AQ9Y536 164 aa10.01□□□□□ -0.81
CCDC88C-211ENST00000556726 HCFC1P51610 2035 aa10□□□□□ -0.81
CCDC88C-211ENST00000556726 PPIHO43447 177 aaKnown RBP10□□□□□ -0.81
CCDC88C-211ENST00000556726 CRYABP02511 175 aaKnown RBP10□□□□□ -0.81
CCDC88C-211ENST00000556726 NPPCP23582 126 aa10□□□□□ -0.81
CCDC88C-211ENST00000556726 RPL8P62917 257 aaKnown RBP10□□□□□ -0.81
CCDC88C-211ENST00000556726 ZNF714Q96N38 554 aa10□□□□□ -0.81
CCDC88C-211ENST00000556726 IGHV3OR16-8A0A075B7F1 116 aa10□□□□□ -0.81
CCDC88C-211ENST00000556726 IGHV1-46P01743 117 aa10□□□□□ -0.81
CCDC88C-211ENST00000556726 PFN1P07737 140 aaKnown RBP10□□□□□ -0.81
CCDC88C-211ENST00000556726 SUB1P53999 127 aaKnown RBP eCLIP10□□□□□ -0.81
CCDC88C-211ENST00000556726 RELBQ01201 579 aa10□□□□□ -0.81
CCDC88C-211ENST00000556726 BSPH1Q075Z2 132 aa10□□□□□ -0.81
CCDC88C-211ENST00000556726 ASCL2Q99929 193 aa10□□□□□ -0.81
CCDC88C-211ENST00000556726 IFI27L2Q9H2X8 130 aa10□□□□□ -0.81
CCDC88C-211ENST00000556726 GSX1Q9H4S2 264 aaPredicted RBP10□□□□□ -0.81
CCDC88C-211ENST00000556726 IL19Q9UHD0 177 aa10□□□□□ -0.81
CCDC88C-211ENST00000556726 HILPDAQ9Y5L2 63 aa10□□□□□ -0.81
CCDC88C-211ENST00000556726 SLC25A15Q9Y619 301 aa10□□□□□ -0.81
CCDC88C-211ENST00000556726 IGHV2-70P01814 119 aa10□□□□□ -0.81
CCDC88C-211ENST00000556726 USF1P22415 310 aaPredicted RBP10□□□□□ -0.81
CCDC88C-211ENST00000556726 GPR6P46095 362 aaPredicted RBP10□□□□□ -0.81
CCDC88C-211ENST00000556726 BRWD1-AS2P59051 145 aa10□□□□□ -0.81
CCDC88C-211ENST00000556726 GNG5P63218 68 aa10□□□□□ -0.81
CCDC88C-211ENST00000556726 ARSJQ5FYB0 599 aaPredicted RBP10□□□□□ -0.81
CCDC88C-211ENST00000556726 TIMM23BQ5SRD1 257 aa10□□□□□ -0.81
CCDC88C-211ENST00000556726 OR1L8Q8NGR8 309 aa10□□□□□ -0.81
CCDC88C-211ENST00000556726 NEUROG1Q92886 237 aa10□□□□□ -0.81
CCDC88C-211ENST00000556726 LOXL4Q96JB6 756 aa10□□□□□ -0.81
CCDC88C-211ENST00000556726 DOPEY2Q9Y3R5 2298 aa10□□□□□ -0.81
CCDC88C-211ENST00000556726 TMSB15BA0A087X1C1 80 aa9.99□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms