RNA–Protein interactions for RNA: ENST00000555995.1

CCDC88C-210, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 689 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-210ENST00000555995 OR51S1Q8NGJ8 323 aa15.75■□□□□ 0.11
CCDC88C-210ENST00000555995 THAP7Q9BT49 309 aaPredicted RBP15.75■□□□□ 0.11
CCDC88C-210ENST00000555995 NAA60Q9H7X0 242 aa15.75■□□□□ 0.11
CCDC88C-210ENST00000555995 PPP5D1E7EU14 171 aa15.74■□□□□ 0.11
CCDC88C-210ENST00000555995 SPANXN2Q5MJ10 180 aa15.74■□□□□ 0.11
CCDC88C-210ENST00000555995 OR1P1Q8NH06 330 aa15.74■□□□□ 0.11
CCDC88C-210ENST00000555995 ZNF502Q8TBZ5 544 aa15.74■□□□□ 0.11
CCDC88C-210ENST00000555995 TMEM222Q9H0R3 208 aa15.74■□□□□ 0.11
CCDC88C-210ENST00000555995 PLEKHA3Q9HB20 300 aa15.74■□□□□ 0.11
CCDC88C-210ENST00000555995 MCUBQ9NWR8 336 aa15.74■□□□□ 0.11
CCDC88C-210ENST00000555995 GAR1Q9NY12 217 aaKnown RBP15.74■□□□□ 0.11
CCDC88C-210ENST00000555995 NDUFA13Q9P0J0 144 aa15.74■□□□□ 0.11
CCDC88C-210ENST00000555995 GPR132Q9UNW8 380 aa15.74■□□□□ 0.11
CCDC88C-210ENST00000555995 PIGBOS1A0A0B4J2F0 54 aa15.73■□□□□ 0.11
CCDC88C-210ENST00000555995 MFSD2BA6NFX1 497 aa15.73■□□□□ 0.11
CCDC88C-210ENST00000555995 CSN3P07498 182 aa15.73■□□□□ 0.11
CCDC88C-210ENST00000555995 ERHP84090 104 aaKnown RBP15.73■□□□□ 0.11
CCDC88C-210ENST00000555995 IL34Q6ZMJ4 242 aa15.73■□□□□ 0.11
CCDC88C-210ENST00000555995 TOMM5Q8N4H5 51 aa15.73■□□□□ 0.11
CCDC88C-210ENST00000555995 ZNF114Q8NC26 417 aa15.73■□□□□ 0.11
CCDC88C-210ENST00000555995 PALMDQ9NP74 551 aa15.73■□□□□ 0.11
CCDC88C-210ENST00000555995 KCNIP3Q9Y2W7 256 aa15.73■□□□□ 0.11
CCDC88C-210ENST00000555995 DMRT1Q9Y5R6 373 aa15.73■□□□□ 0.11
CCDC88C-210ENST00000555995 CRYM-AS1A6NIL9 109 aa15.72■□□□□ 0.11
CCDC88C-210ENST00000555995 IGKV1-5P01602 117 aa15.72■□□□□ 0.11
CCDC88C-210ENST00000555995 IGHV3-23P01764 117 aa15.72■□□□□ 0.11
CCDC88C-210ENST00000555995 NHLRC4P0CG21 123 aaPredicted RBP15.72■□□□□ 0.11
CCDC88C-210ENST00000555995 SPSB3Q6PJ21 355 aa15.72■□□□□ 0.11
CCDC88C-210ENST00000555995 PLET1Q6UQ28 207 aa15.72■□□□□ 0.11
CCDC88C-210ENST00000555995 CCDC190Q86UF4 302 aa15.72■□□□□ 0.11
CCDC88C-210ENST00000555995 SGPP2Q8IWX5 399 aa15.72■□□□□ 0.11
CCDC88C-210ENST00000555995 OR2C3Q8N628 320 aa15.72■□□□□ 0.11
CCDC88C-210ENST00000555995 SLC35G3Q8N808 338 aa15.72■□□□□ 0.11
CCDC88C-210ENST00000555995 DYNLRB2Q8TF09 96 aa15.72■□□□□ 0.11
CCDC88C-210ENST00000555995 RBPMSQ93062 196 aaKnown RBP15.72■□□□□ 0.11
CCDC88C-210ENST00000555995 BSCL2Q96G97 398 aaPredicted RBP15.72■□□□□ 0.11
CCDC88C-210ENST00000555995 RTBDNQ9BSG5 229 aaPredicted RBP15.72■□□□□ 0.11
CCDC88C-210ENST00000555995 C5orf66Q9H5L9 145 aa15.72■□□□□ 0.11
CCDC88C-210ENST00000555995 CACFD1Q9UGQ2 172 aa15.72■□□□□ 0.11
CCDC88C-210ENST00000555995 V9GYH0 126 aa15.72■□□□□ 0.11
CCDC88C-210ENST00000555995 DBX1A6NMT0 343 aa15.71■□□□□ 0.11
CCDC88C-210ENST00000555995 A8MWP6 167 aa15.71■□□□□ 0.11
CCDC88C-210ENST00000555995 OR2C1O95371 312 aa15.71■□□□□ 0.11
CCDC88C-210ENST00000555995 CDS2O95674 445 aa15.71■□□□□ 0.11
CCDC88C-210ENST00000555995 CLEC3BP05452 202 aa15.71■□□□□ 0.11
CCDC88C-210ENST00000555995 OR5AC1P0C628 307 aa15.71■□□□□ 0.11
CCDC88C-210ENST00000555995 P0C879 139 aa15.71■□□□□ 0.11
CCDC88C-210ENST00000555995 GPR183P32249 361 aa15.71■□□□□ 0.11
CCDC88C-210ENST00000555995 SP6Q3SY56 376 aa15.71■□□□□ 0.11
CCDC88C-210ENST00000555995 TRIM63Q969Q1 353 aa15.71■□□□□ 0.11
CCDC88C-210ENST00000555995 TECRQ9NZ01 308 aaKnown RBP15.71■□□□□ 0.11
CCDC88C-210ENST00000555995 S4R3C0 116 aa15.71■□□□□ 0.11
CCDC88C-210ENST00000555995 INS-IGF2F8WCM5 200 aa15.7■□□□□ 0.1
CCDC88C-210ENST00000555995 IFNA17P01571 189 aa15.7■□□□□ 0.1
CCDC88C-210ENST00000555995 ETV6P41212 452 aa15.7■□□□□ 0.1
CCDC88C-210ENST00000555995 GTSCR1Q86UQ5 136 aa15.7■□□□□ 0.1
CCDC88C-210ENST00000555995 IL22RA2Q969J5 263 aa15.7■□□□□ 0.1
CCDC88C-210ENST00000555995 GALNT14Q96FL9 552 aa15.7■□□□□ 0.1
CCDC88C-210ENST00000555995 ENY2Q9NPA8 101 aa15.7■□□□□ 0.1
CCDC88C-210ENST00000555995 C21orf62Q9NYP8 219 aa15.7■□□□□ 0.1
CCDC88C-210ENST00000555995 C2orf70A6NJV1 201 aa15.69■□□□□ 0.1
CCDC88C-210ENST00000555995 TGOLN2O43493 480 aa15.69■□□□□ 0.1
CCDC88C-210ENST00000555995 HLA-AP01891 365 aaKnown RBP15.69■□□□□ 0.1
CCDC88C-210ENST00000555995 ANXA3P12429 323 aa15.69■□□□□ 0.1
CCDC88C-210ENST00000555995 SNCAP37840 140 aa15.69■□□□□ 0.1
CCDC88C-210ENST00000555995 SRPXP78539 464 aa15.69■□□□□ 0.1
CCDC88C-210ENST00000555995 KLF9Q13886 244 aaPredicted RBP15.69■□□□□ 0.1
CCDC88C-210ENST00000555995 HAPLN4Q86UW8 402 aa15.69■□□□□ 0.1
CCDC88C-210ENST00000555995 GLYATL2Q8WU03 294 aa15.69■□□□□ 0.1
CCDC88C-210ENST00000555995 MARC2Q969Z3 335 aa15.69■□□□□ 0.1
CCDC88C-210ENST00000555995 UFC1Q9Y3C8 167 aa15.69■□□□□ 0.1
CCDC88C-210ENST00000555995 ZNF320A2RRD8 509 aa15.68■□□□□ 0.1
CCDC88C-210ENST00000555995 CORTO00230 105 aa15.68■□□□□ 0.1
CCDC88C-210ENST00000555995 SUB1P53999 127 aaKnown RBP eCLIP15.68■□□□□ 0.1
CCDC88C-210ENST00000555995 ELLP55199 621 aaPredicted RBP15.68■□□□□ 0.1
CCDC88C-210ENST00000555995 ZNF79Q15937 498 aa15.68■□□□□ 0.1
CCDC88C-210ENST00000555995 A0A0B4J293 547 aa15.67■□□□□ 0.1
CCDC88C-210ENST00000555995 K7EIM0 57 aa15.67■□□□□ 0.1
CCDC88C-210ENST00000555995 ST8SIA3O43173 380 aa15.67■□□□□ 0.1
CCDC88C-210ENST00000555995 FOLR2P14207 255 aa15.67■□□□□ 0.1
CCDC88C-210ENST00000555995 INPP1P49441 399 aa15.67■□□□□ 0.1
CCDC88C-210ENST00000555995 HOXA1P49639 335 aaPredicted RBP15.67■□□□□ 0.1
CCDC88C-210ENST00000555995 MFAP2P55001 183 aa15.67■□□□□ 0.1
CCDC88C-210ENST00000555995 TMEM268Q5VZI3 342 aa15.67■□□□□ 0.1
CCDC88C-210ENST00000555995 SCARB1Q8WTV0 552 aa15.67■□□□□ 0.1
CCDC88C-210ENST00000555995 MISP3Q96FF7 219 aa15.67■□□□□ 0.1
CCDC88C-210ENST00000555995 TXN2Q99757 166 aa15.67■□□□□ 0.1
CCDC88C-210ENST00000555995 SLC25A21Q9BQT8 299 aaPredicted RBP15.67■□□□□ 0.1
CCDC88C-210ENST00000555995 ZNF436Q9C0F3 470 aaPredicted RBP15.67■□□□□ 0.1
CCDC88C-210ENST00000555995 CTNNBIP1Q9NSA3 81 aaPredicted RBP15.67■□□□□ 0.1
CCDC88C-210ENST00000555995 TMEM56-RWDD3S4R434 201 aa15.67■□□□□ 0.1
CCDC88C-210ENST00000555995 FCGR2BP31994 310 aaPredicted RBP15.66■□□□□ 0.1
CCDC88C-210ENST00000555995 MFAP4P55083 255 aa15.66■□□□□ 0.1
CCDC88C-210ENST00000555995 IZUMO4Q1ZYL8 232 aa15.66■□□□□ 0.1
CCDC88C-210ENST00000555995 AARDQ4LEZ3 155 aa15.66■□□□□ 0.1
CCDC88C-210ENST00000555995 Q56UQ5 140 aa15.66■□□□□ 0.1
CCDC88C-210ENST00000555995 OR52E5Q8NH55 327 aa15.66■□□□□ 0.1
CCDC88C-210ENST00000555995 OR2T8A6NH00 312 aa15.65■□□□□ 0.1
CCDC88C-210ENST00000555995 NDUFA4O00483 81 aa15.65■□□□□ 0.1
CCDC88C-210ENST00000555995 CBLN1P23435 193 aa15.65■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms