RNA–Protein interactions for RNA: ENST00000547687.1

CHMP1A-204, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 1 (best)

Gene CHMP1A, Length 2,007 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-204ENST00000547687 IFNA4P05014 189 aa13.37□□□□□ -0.27
CHMP1A-204ENST00000547687 PPIAL4GP0DN37 164 aa13.37□□□□□ -0.27
CHMP1A-204ENST00000547687 IGHV1-8P0DP01 117 aa13.37□□□□□ -0.27
CHMP1A-204ENST00000547687 BCL2P10415 239 aa13.37□□□□□ -0.27
CHMP1A-204ENST00000547687 TMEM249Q2WGJ8 235 aa13.37□□□□□ -0.27
CHMP1A-204ENST00000547687 CYB561D1Q8N8Q1 229 aa13.37□□□□□ -0.27
CHMP1A-204ENST00000547687 TMEM170AQ8WVE7 144 aa13.37□□□□□ -0.27
CHMP1A-204ENST00000547687 LHX4Q969G2 390 aa13.37□□□□□ -0.27
CHMP1A-204ENST00000547687 MXRA5Q9NR99 2828 aa13.37□□□□□ -0.27
CHMP1A-204ENST00000547687 IGHV4-61A0A0C4DH41 118 aa13.37□□□□□ -0.27
CHMP1A-204ENST00000547687 PRSS46E5RG02 174 aa13.37□□□□□ -0.27
CHMP1A-204ENST00000547687 H0YJW9 148 aa13.37□□□□□ -0.27
CHMP1A-204ENST00000547687 EIF3GO75821 320 aaKnown RBP eCLIP13.37□□□□□ -0.27
CHMP1A-204ENST00000547687 MYOD1P15172 320 aa13.37□□□□□ -0.27
CHMP1A-204ENST00000547687 SLC25A16P16260 332 aa13.37□□□□□ -0.27
CHMP1A-204ENST00000547687 REG1BP48304 166 aa13.37□□□□□ -0.27
CHMP1A-204ENST00000547687 OR5AN1Q8NGI8 311 aa13.37□□□□□ -0.27
CHMP1A-204ENST00000547687 C8orf46Q8TAG6 207 aa13.37□□□□□ -0.27
CHMP1A-204ENST00000547687 OSR1Q8TAX0 266 aaPredicted RBP13.37□□□□□ -0.27
CHMP1A-204ENST00000547687 TMEM186Q96B77 213 aa13.37□□□□□ -0.27
CHMP1A-204ENST00000547687 PIMREGQ9BSJ6 248 aa13.37□□□□□ -0.27
CHMP1A-204ENST00000547687 HINT2Q9BX68 163 aa13.37□□□□□ -0.27
CHMP1A-204ENST00000547687 ACTR3CQ9C0K3 210 aaPredicted RBP13.37□□□□□ -0.27
CHMP1A-204ENST00000547687 YAE1D1Q9NRH1 226 aa13.37□□□□□ -0.27
CHMP1A-204ENST00000547687 ZNF257Q9Y2Q1 563 aa13.37□□□□□ -0.27
CHMP1A-204ENST00000547687 A0A087X0M5 115 aa13.36□□□□□ -0.27
CHMP1A-204ENST00000547687 CTXND1A0A1B0GTU2 59 aa13.36□□□□□ -0.27
CHMP1A-204ENST00000547687 A0A1B0GX30 115 aa13.36□□□□□ -0.27
CHMP1A-204ENST00000547687 VWC2LB2RUY7 222 aa13.36□□□□□ -0.27
CHMP1A-204ENST00000547687 C22orf46C9J442 243 aa13.36□□□□□ -0.27
CHMP1A-204ENST00000547687 KBTBD11O94819 623 aa13.36□□□□□ -0.27
CHMP1A-204ENST00000547687 DLK1P80370 383 aa13.36□□□□□ -0.27
CHMP1A-204ENST00000547687 RHEBQ15382 184 aa13.36□□□□□ -0.27
CHMP1A-204ENST00000547687 FAM71F2Q6NXP2 309 aa13.36□□□□□ -0.27
CHMP1A-204ENST00000547687 SLC24A4Q8NFF2 622 aa13.36□□□□□ -0.27
CHMP1A-204ENST00000547687 BET1LQ9NYM9 111 aa13.36□□□□□ -0.27
CHMP1A-204ENST00000547687 H3BQ15 152 aa13.35□□□□□ -0.27
CHMP1A-204ENST00000547687 MPDU1O75352 247 aa13.35□□□□□ -0.27
CHMP1A-204ENST00000547687 IFNA1P01562 189 aa13.35□□□□□ -0.27
CHMP1A-204ENST00000547687 USF1P22415 310 aaPredicted RBP13.35□□□□□ -0.27
CHMP1A-204ENST00000547687 NPY1RP25929 384 aa13.35□□□□□ -0.27
CHMP1A-204ENST00000547687 DLX1P56177 255 aa13.35□□□□□ -0.27
CHMP1A-204ENST00000547687 PMS2P11Q13670 270 aa13.35□□□□□ -0.27
CHMP1A-204ENST00000547687 ACOT6Q3I5F7 207 aaPredicted RBP13.35□□□□□ -0.27
CHMP1A-204ENST00000547687 Q8N7P7 452 aa13.35□□□□□ -0.27
CHMP1A-204ENST00000547687 OR9G1Q8NH87 305 aa13.35□□□□□ -0.27
CHMP1A-204ENST00000547687 SSBP3Q9BWW4 388 aaPredicted RBP13.35□□□□□ -0.27
CHMP1A-204ENST00000547687 SLC25A22Q9H936 323 aa13.35□□□□□ -0.27
CHMP1A-204ENST00000547687 FKBP11Q9NYL4 201 aa13.35□□□□□ -0.27
CHMP1A-204ENST00000547687 ATRQ13535 2644 aa13.35□□□□□ -0.27
CHMP1A-204ENST00000547687 COLCA2A8K830 154 aa13.35□□□□□ -0.27
CHMP1A-204ENST00000547687 CYB5BO43169 146 aa13.35□□□□□ -0.27
CHMP1A-204ENST00000547687 SAA1P0DJI8 122 aaPredicted RBP13.35□□□□□ -0.27
CHMP1A-204ENST00000547687 LOXL1Q08397 574 aaPredicted RBP13.35□□□□□ -0.27
CHMP1A-204ENST00000547687 TMEM177Q53S58 311 aa13.35□□□□□ -0.27
CHMP1A-204ENST00000547687 TREML4Q6UXN2 200 aa13.35□□□□□ -0.27
CHMP1A-204ENST00000547687 RBMS3Q6XE24 437 aaKnown RBP13.35□□□□□ -0.27
CHMP1A-204ENST00000547687 LY6G5BQ8NDX9 201 aa13.35□□□□□ -0.27
CHMP1A-204ENST00000547687 ST6GALNAC6Q969X2 333 aa13.35□□□□□ -0.27
CHMP1A-204ENST00000547687 FLYWCH2Q96CP2 140 aaKnown RBP13.35□□□□□ -0.27
CHMP1A-204ENST00000547687 HARBI1Q96MB7 349 aa13.35□□□□□ -0.27
CHMP1A-204ENST00000547687 NABP2Q9BQ15 211 aa13.35□□□□□ -0.27
CHMP1A-204ENST00000547687 VAX2Q9UIW0 290 aa13.35□□□□□ -0.27
CHMP1A-204ENST00000547687 TEX50A0A1B0GTY4 177 aa13.34□□□□□ -0.27
CHMP1A-204ENST00000547687 A0A1W2PPH5 198 aa13.34□□□□□ -0.27
CHMP1A-204ENST00000547687 HMGB3O15347 200 aaKnown RBP13.34□□□□□ -0.27
CHMP1A-204ENST00000547687 CD5LO43866 347 aa13.34□□□□□ -0.27
CHMP1A-204ENST00000547687 CA2P00918 260 aa13.34□□□□□ -0.27
CHMP1A-204ENST00000547687 OPN1MWP04001 364 aa13.34□□□□□ -0.27
CHMP1A-204ENST00000547687 OPN1MW2P0DN77 364 aa13.34□□□□□ -0.27
CHMP1A-204ENST00000547687 OPN1MW3P0DN78 364 aa13.34□□□□□ -0.27
CHMP1A-204ENST00000547687 PRCDQ00LT1 54 aa13.34□□□□□ -0.27
CHMP1A-204ENST00000547687 DIAPH2-AS1Q14236 149 aa13.34□□□□□ -0.27
CHMP1A-204ENST00000547687 C15orf54Q8N8G6 183 aa13.34□□□□□ -0.27
CHMP1A-204ENST00000547687 TMEM133Q9H2Q1 129 aa13.34□□□□□ -0.27
CHMP1A-204ENST00000547687 PLEKHA3Q9HB20 300 aa13.34□□□□□ -0.27
CHMP1A-204ENST00000547687 TET2Q6N021 2002 aaPredicted RBP13.34□□□□□ -0.27
CHMP1A-204ENST00000547687 LIPFP07098 398 aa13.34□□□□□ -0.27
CHMP1A-204ENST00000547687 PRB3Q04118 309 aaPredicted RBP13.34□□□□□ -0.27
CHMP1A-204ENST00000547687 RAB24Q969Q5 203 aa13.34□□□□□ -0.27
CHMP1A-204ENST00000547687 P2RX4Q99571 388 aa13.34□□□□□ -0.27
CHMP1A-204ENST00000547687 TUBA4BQ9H853 241 aa13.34□□□□□ -0.27
CHMP1A-204ENST00000547687 NPVFQ9HCQ7 196 aa13.34□□□□□ -0.27
CHMP1A-204ENST00000547687 SOX15O60248 233 aa13.33□□□□□ -0.28
CHMP1A-204ENST00000547687 IGHV4-31P0DP07 118 aa13.33□□□□□ -0.28
CHMP1A-204ENST00000547687 ZNF137PP52743 207 aa13.33□□□□□ -0.28
CHMP1A-204ENST00000547687 PDPNQ86YL7 162 aa13.33□□□□□ -0.28
CHMP1A-204ENST00000547687 LOC105371242A0A075B767 164 aa13.32□□□□□ -0.28
CHMP1A-204ENST00000547687 PAX6P26367 422 aa13.32□□□□□ -0.28
CHMP1A-204ENST00000547687 OPRK1P41145 380 aa13.32□□□□□ -0.28
CHMP1A-204ENST00000547687 OR4C13Q8NGP0 309 aa13.32□□□□□ -0.28
CHMP1A-204ENST00000547687 OR5B3Q8NH48 314 aa13.32□□□□□ -0.28
CHMP1A-204ENST00000547687 TVP23CQ96ET8 276 aa13.32□□□□□ -0.28
CHMP1A-204ENST00000547687 MGST2Q99735 147 aa13.32□□□□□ -0.28
CHMP1A-204ENST00000547687 NIPSNAP3BQ9BS92 247 aa13.32□□□□□ -0.28
CHMP1A-204ENST00000547687 TMPRSS5Q9H3S3 457 aa13.32□□□□□ -0.28
CHMP1A-204ENST00000547687 ONECUT1Q9UBC0 465 aa13.32□□□□□ -0.28
CHMP1A-204ENST00000547687 WNK2Q9Y3S1 2297 aa13.32□□□□□ -0.28
CHMP1A-204ENST00000547687 FBN1P35555 2871 aaKnown RBP13.32□□□□□ -0.28
CHMP1A-204ENST00000547687 NDUFS8O00217 210 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms