RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 RPL29P47914 159 aaKnown RBP12.31□□□□□ -0.44
USP28-214ENST00000545540 MBNL2Q5VZF2 373 aaKnown RBP12.31□□□□□ -0.44
USP28-214ENST00000545540 MRPL54Q6P161 138 aaKnown RBP12.31□□□□□ -0.44
USP28-214ENST00000545540 PARD6AQ9NPB6 346 aa12.31□□□□□ -0.44
USP28-214ENST00000545540 MALRD1Q5VYJ5 2156 aa12.31□□□□□ -0.44
USP28-214ENST00000545540 IGHV3-72A0A0B4J1Y9 119 aa12.31□□□□□ -0.44
USP28-214ENST00000545540 CHRNB4P30926 498 aa12.31□□□□□ -0.44
USP28-214ENST00000545540 TNFAIP6P98066 277 aaPredicted RBP12.31□□□□□ -0.44
USP28-214ENST00000545540 TP53TG3Q9ULZ0 132 aa12.31□□□□□ -0.44
USP28-214ENST00000545540 MUC6Q6W4X9 2439 aa12.3□□□□□ -0.44
USP28-214ENST00000545540 SERF1AO75920 110 aa12.3□□□□□ -0.44
USP28-214ENST00000545540 HSPE1P61604 102 aaKnown RBP12.3□□□□□ -0.44
USP28-214ENST00000545540 OR5R1Q8NH85 324 aa12.3□□□□□ -0.44
USP28-214ENST00000545540 TBX15Q96SF7 602 aa12.3□□□□□ -0.44
USP28-214ENST00000545540 RYDENQ9NUL5 291 aaKnown RBP12.3□□□□□ -0.44
USP28-214ENST00000545540 SNURFLB1AK76 121 aa12.3□□□□□ -0.44
USP28-214ENST00000545540 BATFQ16520 125 aa12.3□□□□□ -0.44
USP28-214ENST00000545540 TOMM20LQ6UXN7 152 aa12.3□□□□□ -0.44
USP28-214ENST00000545540 TMEM144Q7Z5S9 345 aa12.3□□□□□ -0.44
USP28-214ENST00000545540 OR1L6Q8NGR2 347 aa12.3□□□□□ -0.44
USP28-214ENST00000545540 PPP1R35Q8TAP8 253 aa12.3□□□□□ -0.44
USP28-214ENST00000545540 DDB2Q92466 427 aa12.3□□□□□ -0.44
USP28-214ENST00000545540 NABP2Q9BQ15 211 aa12.3□□□□□ -0.44
USP28-214ENST00000545540 MRPL18Q9H0U6 180 aaKnown RBP12.3□□□□□ -0.44
USP28-214ENST00000545540 PAM16Q9Y3D7 125 aa12.3□□□□□ -0.44
USP28-214ENST00000545540 LSM4Q9Y4Z0 139 aaKnown RBP12.3□□□□□ -0.44
USP28-214ENST00000545540 RNF114Q9Y508 228 aa12.3□□□□□ -0.44
USP28-214ENST00000545540 TRGV10A0A0A0MS01 117 aa12.3□□□□□ -0.44
USP28-214ENST00000545540 TRAV34A0A0B4J273 112 aa12.3□□□□□ -0.44
USP28-214ENST00000545540 KBTBD11-OT1A0A1B0GTJ5 212 aa12.3□□□□□ -0.44
USP28-214ENST00000545540 H3BTX0 84 aa12.3□□□□□ -0.44
USP28-214ENST00000545540 RPP30P78346 268 aaKnown RBP12.3□□□□□ -0.44
USP28-214ENST00000545540 CENPWQ5EE01 88 aa12.3□□□□□ -0.44
USP28-214ENST00000545540 BAGE3Q86Y29 109 aa12.3□□□□□ -0.44
USP28-214ENST00000545540 BAGE2Q86Y30 109 aa12.3□□□□□ -0.44
USP28-214ENST00000545540 POLR3KQ9Y2Y1 108 aaPredicted RBP12.3□□□□□ -0.44
USP28-214ENST00000545540 COL6A6A6NMZ7 2263 aa12.29□□□□□ -0.44
USP28-214ENST00000545540 ST6GALNAC3Q8NDV1 305 aa12.29□□□□□ -0.44
USP28-214ENST00000545540 H1FXQ92522 213 aaKnown RBP12.29□□□□□ -0.44
USP28-214ENST00000545540 DIRC2Q96SL1 478 aa12.29□□□□□ -0.44
USP28-214ENST00000545540 ASCL3Q9NQ33 180 aa12.29□□□□□ -0.44
USP28-214ENST00000545540 FAM215AQ9Y5M1 114 aa12.29□□□□□ -0.44
USP28-214ENST00000545540 CT45A6P0DMU7 189 aa12.29□□□□□ -0.44
USP28-214ENST00000545540 CT45A5P0DMU8 189 aa12.29□□□□□ -0.44
USP28-214ENST00000545540 CT45A7P0DMV0 189 aa12.29□□□□□ -0.44
USP28-214ENST00000545540 RHOBP62745 196 aa12.29□□□□□ -0.44
USP28-214ENST00000545540 ZNF705AQ6ZN79 300 aaPredicted RBP12.29□□□□□ -0.44
USP28-214ENST00000545540 VN1R17PQ8TDU5 208 aa12.29□□□□□ -0.44
USP28-214ENST00000545540 HSPB9Q9BQS6 159 aa12.29□□□□□ -0.44
USP28-214ENST00000545540 LINC00310P59036 64 aa12.28□□□□□ -0.44
USP28-214ENST00000545540 CMTM2Q8TAZ6 248 aa12.28□□□□□ -0.44
USP28-214ENST00000545540 PLEKHA3Q9HB20 300 aa12.28□□□□□ -0.44
USP28-214ENST00000545540 SLC35D1Q9NTN3 355 aa12.28□□□□□ -0.44
USP28-214ENST00000545540 RPH3ALQ9UNE2 315 aa12.28□□□□□ -0.44
USP28-214ENST00000545540 ARHGAP32A7KAX9 2087 aa12.28□□□□□ -0.44
USP28-214ENST00000545540 IGHV1-46P01743 117 aa12.28□□□□□ -0.44
USP28-214ENST00000545540 LINC00869P0C866 280 aa12.28□□□□□ -0.44
USP28-214ENST00000545540 PYYP10082 97 aa12.28□□□□□ -0.44
USP28-214ENST00000545540 Q6ZWC4 215 aa12.28□□□□□ -0.44
USP28-214ENST00000545540 WFDC8Q8IUA0 241 aa12.28□□□□□ -0.44
USP28-214ENST00000545540 F2RL2O00254 374 aa12.28□□□□□ -0.44
USP28-214ENST00000545540 COA6Q5JTJ3 125 aaKnown RBP12.28□□□□□ -0.44
USP28-214ENST00000545540 PRR27Q6MZM9 219 aa12.28□□□□□ -0.44
USP28-214ENST00000545540 MMD2Q8IY49 270 aa12.28□□□□□ -0.44
USP28-214ENST00000545540 RNASEH2CQ8TDP1 164 aaKnown RBP12.28□□□□□ -0.44
USP28-214ENST00000545540 FAM168AQ92567 244 aa12.28□□□□□ -0.44
USP28-214ENST00000545540 ZNF503Q96F45 646 aa12.28□□□□□ -0.44
USP28-214ENST00000545540 EAF1Q96JC9 268 aaPredicted RBP12.28□□□□□ -0.44
USP28-214ENST00000545540 DSCAML1Q8TD84 2053 aa12.27□□□□□ -0.44
USP28-214ENST00000545540 HELTA6NFD8 242 aa12.27□□□□□ -0.44
USP28-214ENST00000545540 SAA1P0DJI8 122 aaPredicted RBP12.27□□□□□ -0.44
USP28-214ENST00000545540 CRISP2P16562 243 aa12.27□□□□□ -0.44
USP28-214ENST00000545540 IGFBPL1Q8WX77 278 aa12.27□□□□□ -0.44
USP28-214ENST00000545540 CCL17Q92583 94 aa12.27□□□□□ -0.44
USP28-214ENST00000545540 MRPL20Q9BYC9 149 aaKnown RBP12.27□□□□□ -0.44
USP28-214ENST00000545540 IGF2RP11717 2491 aa12.27□□□□□ -0.44
USP28-214ENST00000545540 TYMSP04818 313 aa12.27□□□□□ -0.45
USP28-214ENST00000545540 RUSC1-AS1Q66K80 236 aa12.27□□□□□ -0.45
USP28-214ENST00000545540 TCTEX1D1Q8N7M0 179 aa12.27□□□□□ -0.45
USP28-214ENST00000545540 SNHG12Q9BXW3 62 aa12.27□□□□□ -0.45
USP28-214ENST00000545540 SAMD10Q9BYL1 202 aa12.27□□□□□ -0.45
USP28-214ENST00000545540 TMEM14BQ9NUH8 114 aa12.27□□□□□ -0.45
USP28-214ENST00000545540 RNF7Q9UBF6 113 aa12.27□□□□□ -0.45
USP28-214ENST00000545540 NAGKQ9UJ70 344 aa12.27□□□□□ -0.45
USP28-214ENST00000545540 GGTLC3B5MD39 225 aa12.27□□□□□ -0.45
USP28-214ENST00000545540 GNG4P50150 75 aa12.27□□□□□ -0.45
USP28-214ENST00000545540 PDLIM4P50479 330 aa12.27□□□□□ -0.45
USP28-214ENST00000545540 GAFA1Q96PS6 74 aa12.27□□□□□ -0.45
USP28-214ENST00000545540 RAI1Q7Z5J4 1906 aaPredicted RBP12.26□□□□□ -0.45
USP28-214ENST00000545540 TEX50A0A1B0GTY4 177 aa12.26□□□□□ -0.45
USP28-214ENST00000545540 A6NNC1 897 aa12.26□□□□□ -0.45
USP28-214ENST00000545540 RAB1CQ92928 201 aa12.26□□□□□ -0.45
USP28-214ENST00000545540 NAT8BQ9UHF3 227 aa12.26□□□□□ -0.45
USP28-214ENST00000545540 ZNF891A8MT65 544 aaPredicted RBP12.26□□□□□ -0.45
USP28-214ENST00000545540 MPDU1O75352 247 aa12.26□□□□□ -0.45
USP28-214ENST00000545540 GCGP01275 180 aa12.26□□□□□ -0.45
USP28-214ENST00000545540 CGB3P0DN86 165 aa12.26□□□□□ -0.45
USP28-214ENST00000545540 CGB7P0DN87 165 aa12.26□□□□□ -0.45
USP28-214ENST00000545540 LCN2P80188 198 aa12.26□□□□□ -0.45
USP28-214ENST00000545540 FOXL1Q12952 345 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms