RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 PARLQ9H300 379 aa11.58□□□□□ -0.56
VPS33A-209ENST00000544349 PAGE4O60829 102 aa11.57□□□□□ -0.56
VPS33A-209ENST00000544349 IFNA10P01566 189 aa11.57□□□□□ -0.56
VPS33A-209ENST00000544349 MBP02144 154 aa11.57□□□□□ -0.56
VPS33A-209ENST00000544349 CD1BP29016 333 aa11.57□□□□□ -0.56
VPS33A-209ENST00000544349 CDC34P49427 236 aaPredicted RBP11.57□□□□□ -0.56
VPS33A-209ENST00000544349 SPCS3P61009 180 aa11.57□□□□□ -0.56
VPS33A-209ENST00000544349 ARF6P62330 175 aa11.57□□□□□ -0.56
VPS33A-209ENST00000544349 TGIF2LXQ8IUE1 241 aa11.57□□□□□ -0.56
VPS33A-209ENST00000544349 ZNF709Q8N972 641 aa11.57□□□□□ -0.56
VPS33A-209ENST00000544349 OR52E5Q8NH55 327 aa11.57□□□□□ -0.56
VPS33A-209ENST00000544349 BPESC1Q9GZL8 116 aa11.57□□□□□ -0.56
VPS33A-209ENST00000544349 DOK5Q9P104 306 aa11.57□□□□□ -0.56
VPS33A-209ENST00000544349 NAT8Q9UHE5 227 aa11.57□□□□□ -0.56
VPS33A-209ENST00000544349 SRRM4A7MD48 611 aaKnown RBP11.57□□□□□ -0.56
VPS33A-209ENST00000544349 CLDN34H7C241 214 aa11.57□□□□□ -0.56
VPS33A-209ENST00000544349 M0R1W7 72 aa11.57□□□□□ -0.56
VPS33A-209ENST00000544349 IL6RP08887 468 aaPredicted RBP11.57□□□□□ -0.56
VPS33A-209ENST00000544349 PSMB3P49720 205 aa11.57□□□□□ -0.56
VPS33A-209ENST00000544349 NDUFA6P56556 154 aa11.57□□□□□ -0.56
VPS33A-209ENST00000544349 TREML4Q6UXN2 200 aa11.57□□□□□ -0.56
VPS33A-209ENST00000544349 C16orf82Q7Z2V1 217 aa11.57□□□□□ -0.56
VPS33A-209ENST00000544349 OSR1Q8TAX0 266 aaPredicted RBP11.57□□□□□ -0.56
VPS33A-209ENST00000544349 FAM210BQ96KR6 192 aa11.57□□□□□ -0.56
VPS33A-209ENST00000544349 PCGF1Q9BSM1 259 aa11.57□□□□□ -0.56
VPS33A-209ENST00000544349 HEYLQ9NQ87 328 aaPredicted RBP11.57□□□□□ -0.56
VPS33A-209ENST00000544349 TCF19Q9Y242 345 aa11.57□□□□□ -0.56
VPS33A-209ENST00000544349 C15orf61A6NNL5 157 aa11.56□□□□□ -0.56
VPS33A-209ENST00000544349 C17orf112F2Z3M2 114 aa11.56□□□□□ -0.56
VPS33A-209ENST00000544349 BUB1B-PAK6H3BSN5 160 aa11.56□□□□□ -0.56
VPS33A-209ENST00000544349 COX7A1P24310 79 aa11.56□□□□□ -0.56
VPS33A-209ENST00000544349 ZFP36P26651 326 aaKnown RBP11.56□□□□□ -0.56
VPS33A-209ENST00000544349 PDLIM4P50479 330 aa11.56□□□□□ -0.56
VPS33A-209ENST00000544349 RPL23P62829 140 aaKnown RBP11.56□□□□□ -0.56
VPS33A-209ENST00000544349 PDLIM3Q53GG5 364 aaPredicted RBP11.56□□□□□ -0.56
VPS33A-209ENST00000544349 TMEM177Q53S58 311 aa11.56□□□□□ -0.56
VPS33A-209ENST00000544349 PDPNQ86YL7 162 aa11.56□□□□□ -0.56
VPS33A-209ENST00000544349 MGST2Q99735 147 aa11.56□□□□□ -0.56
VPS33A-209ENST00000544349 MANBALQ9NQG1 85 aa11.56□□□□□ -0.56
VPS33A-209ENST00000544349 TMEM242Q9NWH2 141 aa11.56□□□□□ -0.56
VPS33A-209ENST00000544349 TMEM250H0YL14 139 aa11.56□□□□□ -0.56
VPS33A-209ENST00000544349 NPPCP23582 126 aa11.56□□□□□ -0.56
VPS33A-209ENST00000544349 GFI1BQ5VTD9 330 aa11.56□□□□□ -0.56
VPS33A-209ENST00000544349 OR4P4Q8NGL7 312 aa11.56□□□□□ -0.56
VPS33A-209ENST00000544349 FRZBQ92765 325 aa11.56□□□□□ -0.56
VPS33A-209ENST00000544349 FLYWCH2Q96CP2 140 aaKnown RBP11.56□□□□□ -0.56
VPS33A-209ENST00000544349 C1orf159Q96HA4 380 aa11.56□□□□□ -0.56
VPS33A-209ENST00000544349 ELOVL1Q9BW60 279 aa11.56□□□□□ -0.56
VPS33A-209ENST00000544349 ZNF462Q96JM2 2506 aa11.55□□□□□ -0.56
VPS33A-209ENST00000544349 SEC14L6B5MCN3 397 aa11.55□□□□□ -0.56
VPS33A-209ENST00000544349 PHOX2AO14813 284 aa11.55□□□□□ -0.56
VPS33A-209ENST00000544349 HOXA5P20719 270 aa11.55□□□□□ -0.56
VPS33A-209ENST00000544349 ATP5G3P48201 142 aa11.55□□□□□ -0.56
VPS33A-209ENST00000544349 PNKDQ8N490 385 aa11.55□□□□□ -0.56
VPS33A-209ENST00000544349 NECAP1Q8NC96 275 aa11.55□□□□□ -0.56
VPS33A-209ENST00000544349 OR4C13Q8NGP0 309 aa11.55□□□□□ -0.56
VPS33A-209ENST00000544349 TMEM14BQ9NUH8 114 aa11.55□□□□□ -0.56
VPS33A-209ENST00000544349 FOXA2Q9Y261 457 aaPredicted RBP11.55□□□□□ -0.56
VPS33A-209ENST00000544349 WASHC3Q9Y3C0 194 aa11.55□□□□□ -0.56
VPS33A-209ENST00000544349 USP9XQ93008 2570 aaPredicted RBP11.54□□□□□ -0.56
VPS33A-209ENST00000544349 UPK2O00526 184 aa11.54□□□□□ -0.56
VPS33A-209ENST00000544349 S100A9P06702 114 aaKnown RBP11.54□□□□□ -0.56
VPS33A-209ENST00000544349 MC5RP33032 325 aa11.54□□□□□ -0.56
VPS33A-209ENST00000544349 UBE2G2P60604 165 aa11.54□□□□□ -0.56
VPS33A-209ENST00000544349 LMO4P61968 165 aa11.54□□□□□ -0.56
VPS33A-209ENST00000544349 TMEM241Q24JQ0 296 aa11.54□□□□□ -0.56
VPS33A-209ENST00000544349 ACOT6Q3I5F7 207 aaPredicted RBP11.54□□□□□ -0.56
VPS33A-209ENST00000544349 MIC13Q5XKP0 118 aa11.54□□□□□ -0.56
VPS33A-209ENST00000544349 C1orf122Q6ZSJ8 110 aa11.54□□□□□ -0.56
VPS33A-209ENST00000544349 OR51G1Q8NGK1 321 aa11.54□□□□□ -0.56
VPS33A-209ENST00000544349 ABHD5Q8WTS1 349 aa11.54□□□□□ -0.56
VPS33A-209ENST00000544349 HARBI1Q96MB7 349 aa11.54□□□□□ -0.56
VPS33A-209ENST00000544349 GGTLC1Q9BX51 225 aa11.54□□□□□ -0.56
VPS33A-209ENST00000544349 NIT2Q9NQR4 276 aa11.54□□□□□ -0.56
VPS33A-209ENST00000544349 BET1LQ9NYM9 111 aa11.54□□□□□ -0.56
VPS33A-209ENST00000544349 AMMECR1Q9Y4X0 333 aaPredicted RBP11.54□□□□□ -0.56
VPS33A-209ENST00000544349 C11orf94C9JXX5 98 aa11.54□□□□□ -0.56
VPS33A-209ENST00000544349 ENSAO43768 121 aaKnown RBP11.54□□□□□ -0.56
VPS33A-209ENST00000544349 LY86O95711 162 aa11.54□□□□□ -0.56
VPS33A-209ENST00000544349 TRGC1P0CF51 173 aa11.54□□□□□ -0.56
VPS33A-209ENST00000544349 SAA1P0DJI8 122 aaPredicted RBP11.54□□□□□ -0.56
VPS33A-209ENST00000544349 COX6B1P14854 86 aa11.54□□□□□ -0.56
VPS33A-209ENST00000544349 PRTN3P24158 256 aa11.54□□□□□ -0.56
VPS33A-209ENST00000544349 BSXQ3C1V8 233 aa11.54□□□□□ -0.56
VPS33A-209ENST00000544349 OR11H6Q8NGC7 330 aa11.54□□□□□ -0.56
VPS33A-209ENST00000544349 SPTAN1Q13813 2472 aaKnown RBP11.54□□□□□ -0.56
VPS33A-209ENST00000544349 AKAP6Q13023 2319 aa11.53□□□□□ -0.56
VPS33A-209ENST00000544349 TRBV24-1A0A075B6N3 115 aa11.53□□□□□ -0.56
VPS33A-209ENST00000544349 A1L4Q6 167 aa11.53□□□□□ -0.56
VPS33A-209ENST00000544349 LY6LH3BQJ8 138 aa11.53□□□□□ -0.56
VPS33A-209ENST00000544349 HSPE1P61604 102 aaKnown RBP11.53□□□□□ -0.56
VPS33A-209ENST00000544349 PAX2Q02962 417 aa11.53□□□□□ -0.56
VPS33A-209ENST00000544349 ARSJQ5FYB0 599 aaPredicted RBP11.53□□□□□ -0.56
VPS33A-209ENST00000544349 KIR3DL3Q8N743 410 aa11.53□□□□□ -0.56
VPS33A-209ENST00000544349 TCEAL7Q9BRU2 100 aa11.53□□□□□ -0.56
VPS33A-209ENST00000544349 DERL1Q9BUN8 251 aa11.53□□□□□ -0.56
VPS33A-209ENST00000544349 CTDSP1Q9GZU7 261 aa11.53□□□□□ -0.56
VPS33A-209ENST00000544349 PRNDQ9UKY0 176 aa11.53□□□□□ -0.56
VPS33A-209ENST00000544349 IGHV1-3A0A0C4DH29 117 aa11.53□□□□□ -0.56
VPS33A-209ENST00000544349 OPN1MWP04001 364 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms