RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-213ENST00000542641 FAM110DQ8TAY7 271 aaPredicted RBP9.07□□□□□ -0.96
YBX3-213ENST00000542641 WIPF2Q8TF74 440 aaPredicted RBP9.07□□□□□ -0.96
YBX3-213ENST00000542641 WFDC12Q8WWY7 111 aa9.07□□□□□ -0.96
YBX3-213ENST00000542641 C2orf50Q96LR7 162 aa9.07□□□□□ -0.96
YBX3-213ENST00000542641 MS4A10Q96PG2 267 aa9.07□□□□□ -0.96
YBX3-213ENST00000542641 MDFIQ99750 246 aa9.07□□□□□ -0.96
YBX3-213ENST00000542641 MAGT1Q9H0U3 335 aa9.07□□□□□ -0.96
YBX3-213ENST00000542641 HIPK2Q9H2X6 1198 aa9.07□□□□□ -0.96
YBX3-213ENST00000542641 RBKSQ9H477 322 aa9.07□□□□□ -0.96
YBX3-213ENST00000542641 HEYLQ9NQ87 328 aaPredicted RBP9.07□□□□□ -0.96
YBX3-213ENST00000542641 INS-IGF2F8WCM5 200 aa9.06□□□□□ -0.96
YBX3-213ENST00000542641 WRBO00258 174 aa9.06□□□□□ -0.96
YBX3-213ENST00000542641 FBXO24O75426 580 aa9.06□□□□□ -0.96
YBX3-213ENST00000542641 MED6O75586 246 aa9.06□□□□□ -0.96
YBX3-213ENST00000542641 SCGB1D2O95969 90 aa9.06□□□□□ -0.96
YBX3-213ENST00000542641 ELANEP08246 267 aa9.06□□□□□ -0.96
YBX3-213ENST00000542641 CD28P10747 220 aa9.06□□□□□ -0.96
YBX3-213ENST00000542641 CTRB1P17538 263 aa9.06□□□□□ -0.96
YBX3-213ENST00000542641 PSMB8P28062 276 aa9.06□□□□□ -0.96
YBX3-213ENST00000542641 SNCAP37840 140 aa9.06□□□□□ -0.96
YBX3-213ENST00000542641 ID3Q02535 119 aa9.06□□□□□ -0.96
YBX3-213ENST00000542641 CTRB2Q6GPI1 263 aa9.06□□□□□ -0.96
YBX3-213ENST00000542641 C19orf35Q6ZS72 473 aa9.06□□□□□ -0.96
YBX3-213ENST00000542641 OR2C3Q8N628 320 aa9.06□□□□□ -0.96
YBX3-213ENST00000542641 C3orf56Q8N813 242 aa9.06□□□□□ -0.96
YBX3-213ENST00000542641 DTD1Q8TEA8 209 aa9.06□□□□□ -0.96
YBX3-213ENST00000542641 KLK15Q9H2R5 256 aa9.06□□□□□ -0.96
YBX3-213ENST00000542641 TCRBV4S1A1TA0A5B7 111 aa9.05□□□□□ -0.96
YBX3-213ENST00000542641 H3BUA1 57 aa9.05□□□□□ -0.96
YBX3-213ENST00000542641 CYB5BO43169 146 aa9.05□□□□□ -0.96
YBX3-213ENST00000542641 SYNGR2O43760 224 aa9.05□□□□□ -0.96
YBX3-213ENST00000542641 PRH1P02810 166 aa9.05□□□□□ -0.96
YBX3-213ENST00000542641 TRGV3P03979 118 aa9.05□□□□□ -0.96
YBX3-213ENST00000542641 RAB9AP51151 201 aa9.05□□□□□ -0.96
YBX3-213ENST00000542641 H2BFSP57053 126 aa9.05□□□□□ -0.96
YBX3-213ENST00000542641 KRTAP10-3P60369 221 aa9.05□□□□□ -0.96
YBX3-213ENST00000542641 RRAS2P62070 204 aaPredicted RBP9.05□□□□□ -0.96
YBX3-213ENST00000542641 POLR2GP62487 172 aaKnown RBP eCLIP9.05□□□□□ -0.96
YBX3-213ENST00000542641 CYCSP99999 105 aaKnown RBP9.05□□□□□ -0.96
YBX3-213ENST00000542641 SRSF4Q08170 494 aaKnown RBP9.05□□□□□ -0.96
YBX3-213ENST00000542641 FCN2Q15485 313 aa9.05□□□□□ -0.96
YBX3-213ENST00000542641 TCTEX1D4Q5JR98 221 aa9.05□□□□□ -0.96
YBX3-213ENST00000542641 SLC25A24Q6NUK1 477 aa9.05□□□□□ -0.96
YBX3-213ENST00000542641 Q6ZNX1 250 aa9.05□□□□□ -0.96
YBX3-213ENST00000542641 LCNL1Q6ZST4 164 aa9.05□□□□□ -0.96
YBX3-213ENST00000542641 SLA2Q9H6Q3 261 aa9.05□□□□□ -0.96
YBX3-213ENST00000542641 F11RQ9Y624 299 aaKnown RBP9.05□□□□□ -0.96
YBX3-213ENST00000542641 SSSCA1O60232 199 aa9.04□□□□□ -0.96
YBX3-213ENST00000542641 BRI3O95415 125 aa9.04□□□□□ -0.96
YBX3-213ENST00000542641 MBPP02686 304 aaPredicted RBP9.04□□□□□ -0.96
YBX3-213ENST00000542641 RPLP1P05386 114 aaKnown RBP9.04□□□□□ -0.96
YBX3-213ENST00000542641 IAPPP10997 89 aa9.04□□□□□ -0.96
YBX3-213ENST00000542641 CXCL3P19876 107 aa9.04□□□□□ -0.96
YBX3-213ENST00000542641 SUB1P53999 127 aaKnown RBP eCLIP9.04□□□□□ -0.96
YBX3-213ENST00000542641 TPPP2P59282 170 aa9.04□□□□□ -0.96
YBX3-213ENST00000542641 CD83Q01151 205 aa9.04□□□□□ -0.96
YBX3-213ENST00000542641 KHDC1LQ5JSQ8 128 aa9.04□□□□□ -0.96
YBX3-213ENST00000542641 HIST2H2BDQ6DRA6 164 aa9.04□□□□□ -0.96
YBX3-213ENST00000542641 RNF152Q8N8N0 203 aa9.04□□□□□ -0.96
YBX3-213ENST00000542641 OR1L6Q8NGR2 347 aa9.04□□□□□ -0.96
YBX3-213ENST00000542641 OR1P1Q8NH06 330 aa9.04□□□□□ -0.96
YBX3-213ENST00000542641 CIB3Q96Q77 187 aaPredicted RBP9.04□□□□□ -0.96
YBX3-213ENST00000542641 P2RX4Q99571 388 aa9.04□□□□□ -0.96
YBX3-213ENST00000542641 CITED2Q99967 270 aaPredicted RBP9.04□□□□□ -0.96
YBX3-213ENST00000542641 ZNF747Q9BV97 191 aa9.04□□□□□ -0.96
YBX3-213ENST00000542641 NMES1Q9C002 83 aa9.04□□□□□ -0.96
YBX3-213ENST00000542641 IGLV11-55A0A075B6I3 123 aa9.03□□□□□ -0.96
YBX3-213ENST00000542641 TRBV9A0A0B4J1U6 114 aa9.03□□□□□ -0.96
YBX3-213ENST00000542641 OR2J3O76001 311 aa9.03□□□□□ -0.96
YBX3-213ENST00000542641 IFNA10P01566 189 aa9.03□□□□□ -0.96
YBX3-213ENST00000542641 HIST1H1BP16401 226 aaKnown RBP9.03□□□□□ -0.96
YBX3-213ENST00000542641 HTR2BP41595 481 aa9.03□□□□□ -0.96
YBX3-213ENST00000542641 RHOGP84095 191 aa9.03□□□□□ -0.96
YBX3-213ENST00000542641 IL15RAQ13261 267 aa9.03□□□□□ -0.96
YBX3-213ENST00000542641 KRTAP21-3Q3LHN1 58 aa9.03□□□□□ -0.96
YBX3-213ENST00000542641 C11orf87Q6NUJ2 197 aa9.03□□□□□ -0.96
YBX3-213ENST00000542641 ZNF114Q8NC26 417 aa9.03□□□□□ -0.96
YBX3-213ENST00000542641 NECAP1Q8NC96 275 aa9.03□□□□□ -0.96
YBX3-213ENST00000542641 OR11H7Q8NGC8 314 aa9.03□□□□□ -0.96
YBX3-213ENST00000542641 FANCD2OSQ96PS1 177 aa9.03□□□□□ -0.96
YBX3-213ENST00000542641 ZFP57Q9NU63 452 aa9.03□□□□□ -0.96
YBX3-213ENST00000542641 THYN1Q9P016 225 aa9.03□□□□□ -0.96
YBX3-213ENST00000542641 LSM5Q9Y4Y9 91 aaKnown RBP9.03□□□□□ -0.96
YBX3-213ENST00000542641 DMRT1Q9Y5R6 373 aa9.03□□□□□ -0.96
YBX3-213ENST00000542641 TSSC4Q9Y5U2 329 aaPredicted RBP9.03□□□□□ -0.96
YBX3-213ENST00000542641 U3KQ87 197 aa9.03□□□□□ -0.96
YBX3-213ENST00000542641 TET2Q6N021 2002 aaPredicted RBP9.03□□□□□ -0.96
YBX3-213ENST00000542641 A0A0G2JLM5 398 aa9.02□□□□□ -0.97
YBX3-213ENST00000542641 FAM223BA6NKX1 122 aa9.02□□□□□ -0.97
YBX3-213ENST00000542641 WIPF1O43516 503 aa9.02□□□□□ -0.97
YBX3-213ENST00000542641 LY86O95711 162 aa9.02□□□□□ -0.97
YBX3-213ENST00000542641 RNASE2P10153 161 aaKnown RBP9.02□□□□□ -0.97
YBX3-213ENST00000542641 MFAP2P55001 183 aa9.02□□□□□ -0.97
YBX3-213ENST00000542641 S100A10P60903 97 aa9.02□□□□□ -0.97
YBX3-213ENST00000542641 RPP30P78346 268 aaKnown RBP9.02□□□□□ -0.97
YBX3-213ENST00000542641 DEFA5Q01523 94 aa9.02□□□□□ -0.97
YBX3-213ENST00000542641 ATP5G2Q06055 141 aa9.02□□□□□ -0.97
YBX3-213ENST00000542641 RAB32Q13637 225 aa9.02□□□□□ -0.97
YBX3-213ENST00000542641 KLK9Q2XQG4 91 aa9.02□□□□□ -0.97
YBX3-213ENST00000542641 BSXQ3C1V8 233 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms