RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 DPRXA6NFQ7 191 aa11.74□□□□□ -0.53
USP3-204ENST00000540797 CYB5R2Q6BCY4 276 aa11.74□□□□□ -0.53
USP3-204ENST00000540797 IGFL3Q6UXB1 125 aa11.74□□□□□ -0.53
USP3-204ENST00000540797 PIP4P1Q86T03 277 aa11.74□□□□□ -0.53
USP3-204ENST00000540797 TEX45Q8NA69 505 aa11.74□□□□□ -0.53
USP3-204ENST00000540797 SDHCQ99643 169 aaPredicted RBP11.74□□□□□ -0.53
USP3-204ENST00000540797 DLX1P56177 255 aa11.73□□□□□ -0.53
USP3-204ENST00000540797 RARRES2Q99969 163 aa11.73□□□□□ -0.53
USP3-204ENST00000540797 TFF3Q07654 80 aa11.73□□□□□ -0.53
USP3-204ENST00000540797 RPUSD1Q9UJJ7 312 aaKnown RBP11.73□□□□□ -0.53
USP3-204ENST00000540797 IGHV2-26A0A0B4J1V2 119 aa11.73□□□□□ -0.53
USP3-204ENST00000540797 TRAV34A0A0B4J273 112 aa11.73□□□□□ -0.53
USP3-204ENST00000540797 SNRNP200O75643 2136 aaKnown RBP11.73□□□□□ -0.53
USP3-204ENST00000540797 C2orf68Q2NKX9 166 aa11.73□□□□□ -0.53
USP3-204ENST00000540797 C19orf54Q5BKX5 351 aa11.73□□□□□ -0.53
USP3-204ENST00000540797 FAM74A4Q5TZK3 123 aa11.73□□□□□ -0.53
USP3-204ENST00000540797 TMEM200BQ69YZ2 307 aa11.73□□□□□ -0.53
USP3-204ENST00000540797 C8orf46Q8TAG6 207 aa11.73□□□□□ -0.53
USP3-204ENST00000540797 TANC1Q9C0D5 1861 aa11.73□□□□□ -0.53
USP3-204ENST00000540797 TCRBV4S1A1TA0A5B7 111 aa11.73□□□□□ -0.53
USP3-204ENST00000540797 GCGP01275 180 aa11.73□□□□□ -0.53
USP3-204ENST00000540797 BTF3P20290 206 aaKnown RBP11.73□□□□□ -0.53
USP3-204ENST00000540797 EFNB1P98172 346 aa11.73□□□□□ -0.53
USP3-204ENST00000540797 OR11H4Q8NGC9 324 aa11.73□□□□□ -0.53
USP3-204ENST00000540797 C15orf61A6NNL5 157 aa11.73□□□□□ -0.53
USP3-204ENST00000540797 CRXO43186 299 aaPredicted RBP11.73□□□□□ -0.53
USP3-204ENST00000540797 MYOD1P15172 320 aa11.73□□□□□ -0.53
USP3-204ENST00000540797 FAM3BP58499 235 aaPredicted RBP11.73□□□□□ -0.53
USP3-204ENST00000540797 MT-ND6P03923 174 aa11.72□□□□□ -0.53
USP3-204ENST00000540797 C11orf44Q8N8P7 122 aa11.72□□□□□ -0.53
USP3-204ENST00000540797 PNRC2Q9NPJ4 139 aaKnown RBP11.72□□□□□ -0.53
USP3-204ENST00000540797 HEATR5BQ9P2D3 2071 aa11.72□□□□□ -0.53
USP3-204ENST00000540797 A0A0A6YYD4 124 aa11.72□□□□□ -0.53
USP3-204ENST00000540797 FHITP49789 147 aa11.72□□□□□ -0.53
USP3-204ENST00000540797 RHOGP84095 191 aa11.72□□□□□ -0.53
USP3-204ENST00000540797 RBFOX2O43251 390 aaKnown RBP eCLIP11.72□□□□□ -0.539e-6■□□□□ 10.4
USP3-204ENST00000540797 IGHV1-8P0DP01 117 aa11.72□□□□□ -0.53
USP3-204ENST00000540797 ZNF324BQ6AW86 544 aaPredicted RBP11.72□□□□□ -0.53
USP3-204ENST00000540797 DTX1Q86Y01 620 aa11.72□□□□□ -0.53
USP3-204ENST00000540797 NEUROG1Q92886 237 aa11.72□□□□□ -0.53
USP3-204ENST00000540797 GPR82Q96P67 336 aa11.72□□□□□ -0.53
USP3-204ENST00000540797 RAMP3O60896 148 aa11.72□□□□□ -0.53
USP3-204ENST00000540797 TRGC1P0CF51 173 aa11.72□□□□□ -0.53
USP3-204ENST00000540797 DUTP33316 252 aaKnown RBP11.72□□□□□ -0.53
USP3-204ENST00000540797 ZNF56Q15929 161 aa11.72□□□□□ -0.53
USP3-204ENST00000540797 HEPN1Q6WQI6 88 aa11.72□□□□□ -0.53
USP3-204ENST00000540797 RPRMQ9NS64 109 aa11.72□□□□□ -0.53
USP3-204ENST00000540797 IGKV1-27A0A075B6S5 117 aa11.71□□□□□ -0.53
USP3-204ENST00000540797 HLA-DRB1P01911 266 aa11.71□□□□□ -0.53
USP3-204ENST00000540797 MDKP21741 143 aaPredicted RBP11.71□□□□□ -0.53
USP3-204ENST00000540797 ADIPOQQ15848 244 aa11.71□□□□□ -0.53
USP3-204ENST00000540797 C2orf83Q53S99 150 aa11.71□□□□□ -0.53
USP3-204ENST00000540797 TRAF4Q9BUZ4 470 aaPredicted RBP11.71□□□□□ -0.53
USP3-204ENST00000540797 MYO7BQ6PIF6 2116 aa11.71□□□□□ -0.53
USP3-204ENST00000540797 GPX4P36969 197 aaPredicted RBP11.71□□□□□ -0.53
USP3-204ENST00000540797 KLRD1Q13241 179 aa11.71□□□□□ -0.53
USP3-204ENST00000540797 CD177Q8N6Q3 437 aa11.71□□□□□ -0.53
USP3-204ENST00000540797 OR52E5Q8NH55 327 aa11.71□□□□□ -0.53
USP3-204ENST00000540797 HIST1H2BAQ96A08 127 aa11.71□□□□□ -0.53
USP3-204ENST00000540797 CEACAM4O75871 244 aa11.71□□□□□ -0.54
USP3-204ENST00000540797 AKAP6Q13023 2319 aa11.71□□□□□ -0.54
USP3-204ENST00000540797 MOB4Q9Y3A3 225 aa11.71□□□□□ -0.54
USP3-204ENST00000540797 C9JCJ5 164 aa11.7□□□□□ -0.54
USP3-204ENST00000540797 OR9G9P0C7N8 305 aa11.7□□□□□ -0.54
USP3-204ENST00000540797 SLC25A16P16260 332 aa11.7□□□□□ -0.54
USP3-204ENST00000540797 ZNF343Q6P1L6 599 aa11.7□□□□□ -0.54
USP3-204ENST00000540797 FAM169BQ8N8A8 192 aa11.7□□□□□ -0.54
USP3-204ENST00000540797 CDC42EP3Q9UKI2 254 aa11.7□□□□□ -0.54
USP3-204ENST00000540797 PSPNO60542 156 aa11.7□□□□□ -0.54
USP3-204ENST00000540797 EGR1P18146 543 aa11.7□□□□□ -0.54
USP3-204ENST00000540797 GATA2P23769 480 aaPredicted RBP11.7□□□□□ -0.54
USP3-204ENST00000540797 RCC1LQ96I51 464 aaKnown RBP11.7□□□□□ -0.54
USP3-204ENST00000540797 POLEQ07864 2286 aa11.7□□□□□ -0.54
USP3-204ENST00000540797 NSUN5P1Q3KNT7 163 aa11.7□□□□□ -0.54
USP3-204ENST00000540797 LINC00527Q9UJ94 153 aa11.7□□□□□ -0.54
USP3-204ENST00000540797 KIF26BQ2KJY2 2108 aa11.7□□□□□ -0.54
USP3-204ENST00000540797 MPTX1A8MV57 137 aa11.7□□□□□ -0.54
USP3-204ENST00000540797 CGAP01215 116 aa11.7□□□□□ -0.54
USP3-204ENST00000540797 PARLQ9H300 379 aa11.7□□□□□ -0.54
USP3-204ENST00000540797 CLDN16Q9Y5I7 305 aa11.7□□□□□ -0.54
USP3-204ENST00000540797 SPTBN1Q01082 2364 aaKnown RBP11.7□□□□□ -0.54
USP3-204ENST00000540797 NBASA2RRP1 2371 aa11.7□□□□□ -0.54
USP3-204ENST00000540797 C5orf63A6NC05 138 aa11.7□□□□□ -0.54
USP3-204ENST00000540797 LILRA1O75019 489 aa11.7□□□□□ -0.54
USP3-204ENST00000540797 LY6HO94772 140 aa11.7□□□□□ -0.54
USP3-204ENST00000540797 COL8A2P25067 703 aa11.7□□□□□ -0.54
USP3-204ENST00000540797 LHFPL5Q8TAF8 219 aa11.7□□□□□ -0.54
USP3-204ENST00000540797 E7EQL1 145 aa11.69□□□□□ -0.54
USP3-204ENST00000540797 HLA-DQA1P01909 254 aa11.69□□□□□ -0.54
USP3-204ENST00000540797 PLAURQ03405 335 aa11.69□□□□□ -0.54
USP3-204ENST00000540797 C18orf12Q96KH6 178 aa11.69□□□□□ -0.54
USP3-204ENST00000540797 GFI1Q99684 422 aa11.69□□□□□ -0.54
USP3-204ENST00000540797 NHLRC3Q5JS37 347 aa11.69□□□□□ -0.54
USP3-204ENST00000540797 BRD3OSQ6XYD6 125 aa11.69□□□□□ -0.54
USP3-204ENST00000540797 TMEM144Q7Z5S9 345 aa11.69□□□□□ -0.54
USP3-204ENST00000540797 RPRMLQ8N4K4 120 aa11.69□□□□□ -0.54
USP3-204ENST00000540797 PACRGQ96M98 296 aaPredicted RBP11.69□□□□□ -0.54
USP3-204ENST00000540797 DIDO1Q9BTC0 2240 aaKnown RBP11.69□□□□□ -0.54
USP3-204ENST00000540797 IGKV1D-8A0A087WSZ0 117 aa11.69□□□□□ -0.54
USP3-204ENST00000540797 TCF15Q12870 199 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms