RNA–Protein interactions for RNA: ENST00000536710.1

PRKDC-208, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 4

Gene PRKDC, Length 554 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-208ENST00000536710 CRYZL1O95825 349 aa2.12□□□□□ -2.07
PRKDC-208ENST00000536710 RPS4Y1P22090 263 aaKnown RBP2.12□□□□□ -2.07
PRKDC-208ENST00000536710 STX5Q13190 355 aa2.12□□□□□ -2.07
PRKDC-208ENST00000536710 LPCAT3Q6P1A2 487 aa2.12□□□□□ -2.07
PRKDC-208ENST00000536710 FBXL12Q9NXK8 326 aa2.12□□□□□ -2.07
PRKDC-208ENST00000536710 KIF13AQ9H1H9 1805 aa2.12□□□□□ -2.07
PRKDC-208ENST00000536710 WRNQ14191 1432 aaPredicted RBP eCLIP2.11□□□□□ -2.07
PRKDC-208ENST00000536710 TOP2BQ02880 1626 aa2.11□□□□□ -2.07
PRKDC-208ENST00000536710 PQLC2LA1A4F0 135 aa2.11□□□□□ -2.07
PRKDC-208ENST00000536710 MEIS3P1A6NDR6 274 aa2.11□□□□□ -2.07
PRKDC-208ENST00000536710 OR4C46A6NHA9 309 aa2.11□□□□□ -2.07
PRKDC-208ENST00000536710 NAPSAO96009 420 aa2.11□□□□□ -2.07
PRKDC-208ENST00000536710 NFYAP23511 347 aaPredicted RBP2.11□□□□□ -2.07
PRKDC-208ENST00000536710 RPS20P60866 119 aaKnown RBP2.11□□□□□ -2.07
PRKDC-208ENST00000536710 RANP62826 216 aaKnown RBP2.11□□□□□ -2.07
PRKDC-208ENST00000536710 SRSF6Q13247 344 aaKnown RBP2.11□□□□□ -2.07
PRKDC-208ENST00000536710 IBA57Q5T440 356 aaKnown RBP2.11□□□□□ -2.07
PRKDC-208ENST00000536710 RPL22L1Q6P5R6 122 aaKnown RBP2.11□□□□□ -2.07
PRKDC-208ENST00000536710 CMSS1Q9BQ75 279 aaKnown RBP2.11□□□□□ -2.07
PRKDC-208ENST00000536710 DERL1Q9BUN8 251 aa2.11□□□□□ -2.07
PRKDC-208ENST00000536710 C11orf68Q9H3H3 251 aaKnown RBP2.11□□□□□ -2.07
PRKDC-208ENST00000536710 MRPL27Q9P0M9 148 aaKnown RBP2.11□□□□□ -2.07
PRKDC-208ENST00000536710 SIPA1L1O43166 1804 aa2.11□□□□□ -2.07
PRKDC-208ENST00000536710 MAGI1Q96QZ7 1491 aaPredicted RBP2.11□□□□□ -2.07
PRKDC-208ENST00000536710 ABCA10Q8WWZ4 1543 aa2.11□□□□□ -2.07
PRKDC-208ENST00000536710 MTUS2Q5JR59 1369 aa2.1□□□□□ -2.07
PRKDC-208ENST00000536710 ADAMTS12P58397 1594 aa2.1□□□□□ -2.07
PRKDC-208ENST00000536710 RGS12O14924 1447 aa2.1□□□□□ -2.07
PRKDC-208ENST00000536710 TRBV10-2A0A0K0K1G8 114 aa2.1□□□□□ -2.07
PRKDC-208ENST00000536710 TRAPPC2LH3BP13 241 aa2.1□□□□□ -2.07
PRKDC-208ENST00000536710 AP3S2P59780 193 aa2.1□□□□□ -2.07
PRKDC-208ENST00000536710 SUPT4H1P63272 117 aaKnown RBP2.1□□□□□ -2.07
PRKDC-208ENST00000536710 SPA17Q15506 151 aa2.1□□□□□ -2.07
PRKDC-208ENST00000536710 NDUFA5Q16718 116 aa2.1□□□□□ -2.07
PRKDC-208ENST00000536710 BPIFA4PQ86YQ2 179 aa2.1□□□□□ -2.07
PRKDC-208ENST00000536710 SLC22A13Q9Y226 551 aa2.1□□□□□ -2.07
PRKDC-208ENST00000536710 AMMECR1Q9Y4X0 333 aaPredicted RBP2.1□□□□□ -2.07
PRKDC-208ENST00000536710 SYNJ1O43426 1573 aa2.1□□□□□ -2.07
PRKDC-208ENST00000536710 ERCC6L2Q5T890 1561 aa2.1□□□□□ -2.07
PRKDC-208ENST00000536710 TRGV2A0A075B6R0 118 aa2.09□□□□□ -2.07
PRKDC-208ENST00000536710 OR51F1A6NGY5 319 aa2.09□□□□□ -2.07
PRKDC-208ENST00000536710 SMIM9A6NGZ8 99 aa2.09□□□□□ -2.07
PRKDC-208ENST00000536710 TTRP02766 147 aa2.09□□□□□ -2.07
PRKDC-208ENST00000536710 FADDQ13158 208 aa2.09□□□□□ -2.07
PRKDC-208ENST00000536710 Q6ZRN7 208 aaPredicted RBP2.09□□□□□ -2.07
PRKDC-208ENST00000536710 C7orf65Q6ZTY9 151 aa2.09□□□□□ -2.07
PRKDC-208ENST00000536710 NIPSNAP1Q9BPW8 284 aa2.09□□□□□ -2.07
PRKDC-208ENST00000536710 HSPB9Q9BQS6 159 aa2.09□□□□□ -2.07
PRKDC-208ENST00000536710 TMEM147Q9BVK8 224 aa2.09□□□□□ -2.07
PRKDC-208ENST00000536710 GLTPQ9NZD2 209 aa2.09□□□□□ -2.07
PRKDC-208ENST00000536710 TMEM56-RWDD3S4R434 201 aa2.09□□□□□ -2.07
PRKDC-208ENST00000536710 ARHGAP32A7KAX9 2087 aa2.09□□□□□ -2.07
PRKDC-208ENST00000536710 BAHCC1Q9P281 2608 aa2.09□□□□□ -2.08
PRKDC-208ENST00000536710 NYNRINQ9P2P1 1898 aaKnown RBP2.09□□□□□ -2.08
PRKDC-208ENST00000536710 ERICH3Q5RHP9 1530 aa2.08□□□□□ -2.08
PRKDC-208ENST00000536710 TRAV9-1A0A075B6T8 112 aa2.08□□□□□ -2.08
PRKDC-208ENST00000536710 A0A087WUJ7 227 aa2.08□□□□□ -2.08
PRKDC-208ENST00000536710 MEIKINA0A087WXM9 373 aa2.08□□□□□ -2.08
PRKDC-208ENST00000536710 IGKV1D-43A0A0B4J1Z2 117 aa2.08□□□□□ -2.08
PRKDC-208ENST00000536710 TRAV26-2A0A0B4J265 109 aa2.08□□□□□ -2.08
PRKDC-208ENST00000536710 FAM236DA0A1B0GTK5 79 aa2.08□□□□□ -2.08
PRKDC-208ENST00000536710 EXOC1LA0A1B0GW35 172 aa2.08□□□□□ -2.08
PRKDC-208ENST00000536710 DPRXA6NFQ7 191 aa2.08□□□□□ -2.08
PRKDC-208ENST00000536710 CNIH1O95406 144 aa2.08□□□□□ -2.08
PRKDC-208ENST00000536710 FAM236CP0DP71 79 aa2.08□□□□□ -2.08
PRKDC-208ENST00000536710 MAGEA12P43365 314 aa2.08□□□□□ -2.08
PRKDC-208ENST00000536710 FXYD2P54710 66 aa2.08□□□□□ -2.08
PRKDC-208ENST00000536710 EDDM3AQ14507 147 aa2.08□□□□□ -2.08
PRKDC-208ENST00000536710 CDK10Q15131 360 aa2.08□□□□□ -2.08
PRKDC-208ENST00000536710 SPANXN3Q5MJ09 141 aa2.08□□□□□ -2.08
PRKDC-208ENST00000536710 DNAJC9Q8WXX5 260 aa2.08□□□□□ -2.08
PRKDC-208ENST00000536710 TMEM106AQ96A25 262 aa2.08□□□□□ -2.08
PRKDC-208ENST00000536710 BORCS7Q96B45 105 aa2.08□□□□□ -2.08
PRKDC-208ENST00000536710 TRIM4Q9C037 500 aa2.08□□□□□ -2.08
PRKDC-208ENST00000536710 DCSTAMPQ9H295 470 aa2.08□□□□□ -2.08
PRKDC-208ENST00000536710 PRELID3BQ9Y3B1 194 aa2.08□□□□□ -2.08
PRKDC-208ENST00000536710 ICE1Q9Y2F5 2266 aa2.08□□□□□ -2.08
PRKDC-208ENST00000536710 CACNA1GO43497 2377 aa2.08□□□□□ -2.08
PRKDC-208ENST00000536710 WDR90Q96KV7 1748 aa2.08□□□□□ -2.08
PRKDC-208ENST00000536710 SOGA1O94964 1423 aa2.08□□□□□ -2.08
PRKDC-208ENST00000536710 ZFYVE9O95405 1425 aa2.08□□□□□ -2.08
PRKDC-208ENST00000536710 GRIN2AQ12879 1464 aa2.07□□□□□ -2.08
PRKDC-208ENST00000536710 GAPVD1Q14C86 1478 aa2.07□□□□□ -2.08
PRKDC-208ENST00000536710 SCAF11Q99590 1463 aaKnown RBP2.07□□□□□ -2.08
PRKDC-208ENST00000536710 SCN9AQ15858 1988 aa2.07□□□□□ -2.08
PRKDC-208ENST00000536710 PPRC1Q5VV67 1664 aaKnown RBP2.07□□□□□ -2.08
PRKDC-208ENST00000536710 PIRO00625 290 aa2.07□□□□□ -2.08
PRKDC-208ENST00000536710 CIAO1O76071 339 aa2.07□□□□□ -2.08
PRKDC-208ENST00000536710 IGKV1-5P01602 117 aa2.07□□□□□ -2.08
PRKDC-208ENST00000536710 CRPP02741 224 aa2.07□□□□□ -2.08
PRKDC-208ENST00000536710 KISS1Q15726 138 aa2.07□□□□□ -2.08
PRKDC-208ENST00000536710 FAM173BQ6P4H8 233 aa2.07□□□□□ -2.08
PRKDC-208ENST00000536710 OR8B3Q8NGG8 313 aa2.07□□□□□ -2.08
PRKDC-208ENST00000536710 OR13C4Q8NGS5 318 aa2.07□□□□□ -2.08
PRKDC-208ENST00000536710 RASSF5Q8WWW0 418 aa2.07□□□□□ -2.08
PRKDC-208ENST00000536710 TOMM6Q96B49 74 aa2.07□□□□□ -2.08
PRKDC-208ENST00000536710 TSPAN32Q96QS1 320 aa2.07□□□□□ -2.08
PRKDC-208ENST00000536710 GINS4Q9BRT9 223 aa2.07□□□□□ -2.08
PRKDC-208ENST00000536710 CCDC90BQ9GZT6 254 aa2.07□□□□□ -2.08
PRKDC-208ENST00000536710 TP73-AS1Q9UF72 201 aa2.07□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms