RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 TMEM128Q5BJH2 165 aa15.22■□□□□ 0.03
CPSF1-209ENST00000532725 FAM209BQ5JX69 171 aa15.22■□□□□ 0.03
CPSF1-209ENST00000532725 TMEM268Q5VZI3 342 aa15.22■□□□□ 0.03
CPSF1-209ENST00000532725 SLC25A24Q6NUK1 477 aa15.22■□□□□ 0.03
CPSF1-209ENST00000532725 ACSM6Q6P461 480 aa15.22■□□□□ 0.03
CPSF1-209ENST00000532725 OR2C3Q8N628 320 aa15.22■□□□□ 0.03
CPSF1-209ENST00000532725 IL22RA2Q969J5 263 aa15.22■□□□□ 0.03
CPSF1-209ENST00000532725 GPR146Q96CH1 333 aa15.22■□□□□ 0.03
CPSF1-209ENST00000532725 BATF3Q9NR55 127 aa15.22■□□□□ 0.03
CPSF1-209ENST00000532725 PRR13Q9NZ81 148 aa15.22■□□□□ 0.03
CPSF1-209ENST00000532725 F11RQ9Y624 299 aaKnown RBP15.22■□□□□ 0.03
CPSF1-209ENST00000532725 LINC00854A0A1B0GVQ3 168 aa15.21■□□□□ 0.03
CPSF1-209ENST00000532725 IGHV3-23P01764 117 aa15.21■□□□□ 0.03
CPSF1-209ENST00000532725 INSL3P51460 131 aa15.21■□□□□ 0.03
CPSF1-209ENST00000532725 MECP2P51608 486 aaKnown RBP15.21■□□□□ 0.03
CPSF1-209ENST00000532725 AARDQ4LEZ3 155 aa15.21■□□□□ 0.03
CPSF1-209ENST00000532725 PDLIM3Q53GG5 364 aaPredicted RBP15.21■□□□□ 0.03
CPSF1-209ENST00000532725 REC114Q7Z4M0 266 aa15.21■□□□□ 0.03
CPSF1-209ENST00000532725 TMED4Q7Z7H5 227 aa15.21■□□□□ 0.03
CPSF1-209ENST00000532725 CCDC140Q96MF4 163 aa15.21■□□□□ 0.03
CPSF1-209ENST00000532725 AURKAIP1Q9NWT8 199 aaPredicted RBP15.21■□□□□ 0.03
CPSF1-209ENST00000532725 THYN1Q9P016 225 aa15.21■□□□□ 0.03
CPSF1-209ENST00000532725 S4R3C0 116 aa15.21■□□□□ 0.03
CPSF1-209ENST00000532725 MFSD2BA6NFX1 497 aa15.2■□□□□ 0.02
CPSF1-209ENST00000532725 INS-IGF2F8WCM5 200 aa15.2■□□□□ 0.02
CPSF1-209ENST00000532725 PLA2G10O15496 165 aa15.2■□□□□ 0.02
CPSF1-209ENST00000532725 RBMS2Q15434 407 aaKnown RBP15.2■□□□□ 0.02
CPSF1-209ENST00000532725 OR1L6Q8NGR2 347 aa15.2■□□□□ 0.02
CPSF1-209ENST00000532725 OR1P1Q8NH06 330 aa15.2■□□□□ 0.02
CPSF1-209ENST00000532725 RNASE11Q8TAA1 199 aaKnown RBP15.2■□□□□ 0.02
CPSF1-209ENST00000532725 EEF1AKMT3Q96AZ1 226 aa15.2■□□□□ 0.02
CPSF1-209ENST00000532725 CXorf58Q96LI9 332 aa15.2■□□□□ 0.02
CPSF1-209ENST00000532725 C7orf50Q9BRJ6 194 aaKnown RBP15.2■□□□□ 0.02
CPSF1-209ENST00000532725 CTNNBIP1Q9NSA3 81 aaPredicted RBP15.2■□□□□ 0.02
CPSF1-209ENST00000532725 TRBV7-1A0A0A6YYK4 115 aa15.19■□□□□ 0.02
CPSF1-209ENST00000532725 PPP5D1E7EU14 171 aa15.19■□□□□ 0.02
CPSF1-209ENST00000532725 CYB5BO43169 146 aa15.19■□□□□ 0.02
CPSF1-209ENST00000532725 NDUFB6O95139 128 aa15.19■□□□□ 0.02
CPSF1-209ENST00000532725 IFNA17P01571 189 aa15.19■□□□□ 0.02
CPSF1-209ENST00000532725 CLEC3BP05452 202 aa15.19■□□□□ 0.02
CPSF1-209ENST00000532725 ANXA3P12429 323 aa15.19■□□□□ 0.02
CPSF1-209ENST00000532725 BTCP35070 178 aa15.19■□□□□ 0.02
CPSF1-209ENST00000532725 SYNJ2BPP57105 145 aa15.19■□□□□ 0.02
CPSF1-209ENST00000532725 RPEL1Q2QD12 228 aa15.19■□□□□ 0.02
CPSF1-209ENST00000532725 SPINK9Q5DT21 86 aa15.19■□□□□ 0.02
CPSF1-209ENST00000532725 CLEC19AQ6UXS0 136 aa15.19■□□□□ 0.02
CPSF1-209ENST00000532725 IL34Q6ZMJ4 242 aa15.19■□□□□ 0.02
CPSF1-209ENST00000532725 SLC35G3Q8N808 338 aa15.19■□□□□ 0.02
CPSF1-209ENST00000532725 ZNF502Q8TBZ5 544 aa15.19■□□□□ 0.02
CPSF1-209ENST00000532725 VN1R17PQ8TDU5 208 aa15.19■□□□□ 0.02
CPSF1-209ENST00000532725 PLEKHA3Q9HB20 300 aa15.19■□□□□ 0.02
CPSF1-209ENST00000532725 A0A0B4J2A0 478 aa15.18■□□□□ 0.02
CPSF1-209ENST00000532725 CENPXA8MT69 81 aa15.18■□□□□ 0.02
CPSF1-209ENST00000532725 ERHP84090 104 aaKnown RBP15.18■□□□□ 0.02
CPSF1-209ENST00000532725 LYZL2Q7Z4W2 148 aa15.18■□□□□ 0.02
CPSF1-209ENST00000532725 LGI3Q8N145 548 aa15.18■□□□□ 0.02
CPSF1-209ENST00000532725 ZNF114Q8NC26 417 aa15.18■□□□□ 0.02
CPSF1-209ENST00000532725 OR52E5Q8NH55 327 aa15.18■□□□□ 0.02
CPSF1-209ENST00000532725 S100ZQ8WXG8 99 aa15.18■□□□□ 0.02
CPSF1-209ENST00000532725 PTTG2Q9NZH5 202 aa15.18■□□□□ 0.02
CPSF1-209ENST00000532725 ZMAT5Q9UDW3 170 aaKnown RBP15.18■□□□□ 0.02
CPSF1-209ENST00000532725 SHPKQ9UHJ6 478 aa15.18■□□□□ 0.02
CPSF1-209ENST00000532725 PRKDCP78527 4128 aaKnown RBP15.17■□□□□ 0.02
CPSF1-209ENST00000532725 GGCTO75223 188 aaKnown RBP15.17■□□□□ 0.02
CPSF1-209ENST00000532725 SAP30O75446 220 aa15.17■□□□□ 0.02
CPSF1-209ENST00000532725 OR2C1O95371 312 aa15.17■□□□□ 0.02
CPSF1-209ENST00000532725 SFT2D2O95562 160 aa15.17■□□□□ 0.02
CPSF1-209ENST00000532725 HLA-AP01891 365 aaKnown RBP15.17■□□□□ 0.02
CPSF1-209ENST00000532725 SRPXP78539 464 aa15.17■□□□□ 0.02
CPSF1-209ENST00000532725 TATDN3Q17R31 274 aa15.17■□□□□ 0.02
CPSF1-209ENST00000532725 CENPSQ8N2Z9 138 aa15.17■□□□□ 0.02
CPSF1-209ENST00000532725 OR9G4Q8NGQ1 327 aa15.17■□□□□ 0.02
CPSF1-209ENST00000532725 PDCD10Q9BUL8 212 aa15.17■□□□□ 0.02
CPSF1-209ENST00000532725 CCDC32Q9BV29 185 aa15.17■□□□□ 0.02
CPSF1-209ENST00000532725 ELOVL1Q9BW60 279 aa15.17■□□□□ 0.02
CPSF1-209ENST00000532725 CACNG5Q9UF02 275 aa15.17■□□□□ 0.02
CPSF1-209ENST00000532725 FLVCR2Q9UPI3 526 aa15.17■□□□□ 0.02
CPSF1-209ENST00000532725 K7EIM0 57 aa15.16■□□□□ 0.02
CPSF1-209ENST00000532725 SPCS3P61009 180 aa15.16■□□□□ 0.02
CPSF1-209ENST00000532725 PPP1R1AQ13522 171 aa15.16■□□□□ 0.02
CPSF1-209ENST00000532725 ANKRD55Q3KP44 614 aa15.16■□□□□ 0.02
CPSF1-209ENST00000532725 NMSQ5H8A3 153 aa15.16■□□□□ 0.02
CPSF1-209ENST00000532725 GPHB5Q86YW7 130 aa15.16■□□□□ 0.02
CPSF1-209ENST00000532725 LRTM2Q8N967 370 aa15.16■□□□□ 0.02
CPSF1-209ENST00000532725 SCARB1Q8WTV0 552 aa15.16■□□□□ 0.02
CPSF1-209ENST00000532725 OR4C12Q96R67 309 aa15.16■□□□□ 0.02
CPSF1-209ENST00000532725 WI2-2373I1.2A0A1W2PRP0 233 aa15.15■□□□□ 0.02
CPSF1-209ENST00000532725 VAMP1P23763 118 aa15.15■□□□□ 0.02
CPSF1-209ENST00000532725 ARL3P36405 182 aa15.15■□□□□ 0.02
CPSF1-209ENST00000532725 UBE2MP61081 183 aaKnown RBP15.15■□□□□ 0.02
CPSF1-209ENST00000532725 PVRIGQ6DKI7 326 aa15.15■□□□□ 0.02
CPSF1-209ENST00000532725 SORL1Q92673 2214 aa15.15■□□□□ 0.02
CPSF1-209ENST00000532725 IGHV3-21A0A0B4J1V1 117 aa15.14■□□□□ 0.01
CPSF1-209ENST00000532725 I3L2K1 104 aa15.14■□□□□ 0.01
CPSF1-209ENST00000532725 K7EIL1 84 aa15.14■□□□□ 0.01
CPSF1-209ENST00000532725 LYRM1O43325 122 aa15.14■□□□□ 0.01
CPSF1-209ENST00000532725 CSN3P07498 182 aa15.14■□□□□ 0.01
CPSF1-209ENST00000532725 SULT1A3P0DMM9 295 aa15.14■□□□□ 0.01
CPSF1-209ENST00000532725 SULT1A4P0DMN0 295 aa15.14■□□□□ 0.01
CPSF1-209ENST00000532725 ATP6V0BQ99437 205 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 82.4 ms