RNA–Protein interactions for RNA: ENST00000531326.1

PTPN11-204, Transcript of protein tyrosine phosphatase, non-receptor type 11, human

TSL 4

Gene PTPN11, Length 573 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN11-204	ENST00000531326	FAM219A	Q8IW50	185 aa		13.76	□□□□□ -0.21
PTPN11-204	ENST00000531326	DUSP18	Q8NEJ0	188 aa		13.76	□□□□□ -0.21
PTPN11-204	ENST00000531326	OR5T1	Q8NG75	326 aa		13.76	□□□□□ -0.21
PTPN11-204	ENST00000531326	OR1L8	Q8NGR8	309 aa		13.76	□□□□□ -0.21
PTPN11-204	ENST00000531326	OR4A16	Q8NH70	328 aa		13.76	□□□□□ -0.21
PTPN11-204	ENST00000531326	ENKUR	Q8TC29	256 aa		13.76	□□□□□ -0.21
PTPN11-204	ENST00000531326	CASTOR1	Q8WTX7	329 aa		13.76	□□□□□ -0.21
PTPN11-204	ENST00000531326	DCUN1D4	Q92564	292 aa		13.76	□□□□□ -0.21
PTPN11-204	ENST00000531326	LSM10	Q969L4	123 aa	Known RBP	13.76	□□□□□ -0.21
PTPN11-204	ENST00000531326	GPR146	Q96CH1	333 aa		13.76	□□□□□ -0.21
PTPN11-204	ENST00000531326	QTRT1	Q9BXR0	403 aa	Known RBP	13.76	□□□□□ -0.21
PTPN11-204	ENST00000531326	NDUFA4L2	Q9NRX3	87 aa		13.76	□□□□□ -0.21
PTPN11-204	ENST00000531326	SHPK	Q9UHJ6	478 aa		13.76	□□□□□ -0.21
PTPN11-204	ENST00000531326	SMAD5-AS1	Q9Y6J3	95 aa		13.76	□□□□□ -0.21
PTPN11-204	ENST00000531326	IGLC7	A0M8Q6	106 aa		13.75	□□□□□ -0.21
PTPN11-204	ENST00000531326	HLA-A	P01891	365 aa	Known RBP	13.75	□□□□□ -0.21
PTPN11-204	ENST00000531326	H2AFB2	P0C5Z0	115 aa		13.75	□□□□□ -0.21
PTPN11-204	ENST00000531326	AREG	P15514	252 aa		13.75	□□□□□ -0.21
PTPN11-204	ENST00000531326	RAB9A	P51151	201 aa		13.75	□□□□□ -0.21
PTPN11-204	ENST00000531326	NMS	Q5H8A3	153 aa		13.75	□□□□□ -0.21
PTPN11-204	ENST00000531326	SBSPON	Q8IVN8	264 aa		13.75	□□□□□ -0.21
PTPN11-204	ENST00000531326	TTC9C	Q8N5M4	171 aa		13.75	□□□□□ -0.21
PTPN11-204	ENST00000531326	OR5B3	Q8NH48	314 aa		13.75	□□□□□ -0.21
PTPN11-204	ENST00000531326	RNASE11	Q8TAA1	199 aa	Known RBP	13.75	□□□□□ -0.21
PTPN11-204	ENST00000531326	FKBP11	Q9NYL4	201 aa		13.75	□□□□□ -0.21
PTPN11-204	ENST00000531326	TRAPPC2	P0DI81	140 aa		13.74	□□□□□ -0.21
PTPN11-204	ENST00000531326	TRAPPC2B	P0DI82	140 aa		13.74	□□□□□ -0.21
PTPN11-204	ENST00000531326	AARD	Q4LEZ3	155 aa		13.74	□□□□□ -0.21
PTPN11-204	ENST00000531326	C4orf46	Q504U0	113 aa		13.74	□□□□□ -0.21
PTPN11-204	ENST00000531326	ZNF429	Q86V71	674 aa		13.74	□□□□□ -0.21
PTPN11-204	ENST00000531326	OR10W1	Q8NGF6	305 aa		13.74	□□□□□ -0.21
PTPN11-204	ENST00000531326	OR52B4	Q8NGK2	314 aa		13.74	□□□□□ -0.21
PTPN11-204	ENST00000531326	DLX4	Q92988	240 aa	Predicted RBP	13.74	□□□□□ -0.21
PTPN11-204	ENST00000531326	SRSF8	Q9BRL6	282 aa	Known RBP	13.74	□□□□□ -0.21
PTPN11-204	ENST00000531326	ZNF257	Q9Y2Q1	563 aa		13.74	□□□□□ -0.21
PTPN11-204	ENST00000531326	SACS	Q9NZJ4	4579 aa		13.73	□□□□□ -0.21
PTPN11-204	ENST00000531326	TENM2	Q9NT68	2774 aa		13.73	□□□□□ -0.21
PTPN11-204	ENST00000531326	DUXB	A0A1W2PPF3	345 aa		13.73	□□□□□ -0.21
PTPN11-204	ENST00000531326	NPIPB5	A8MRT5	1133 aa		13.73	□□□□□ -0.21
PTPN11-204	ENST00000531326		H3BUA1	57 aa		13.73	□□□□□ -0.21
PTPN11-204	ENST00000531326	OVOL1	O14753	267 aa		13.73	□□□□□ -0.21
PTPN11-204	ENST00000531326	ST8SIA3	O43173	380 aa		13.73	□□□□□ -0.21
PTPN11-204	ENST00000531326	BRI3	O95415	125 aa		13.73	□□□□□ -0.21
PTPN11-204	ENST00000531326	CRYGC	P07315	174 aa		13.73	□□□□□ -0.21
PTPN11-204	ENST00000531326	HSPE1	P61604	102 aa	Known RBP	13.73	□□□□□ -0.21
PTPN11-204	ENST00000531326	CASC10	Q5T4H9	136 aa		13.73	□□□□□ -0.21
PTPN11-204	ENST00000531326	THOC7	Q6I9Y2	204 aa	Known RBP	13.73	□□□□□ -0.21
PTPN11-204	ENST00000531326	C19orf35	Q6ZS72	473 aa		13.73	□□□□□ -0.21
PTPN11-204	ENST00000531326	MUC7	Q8TAX7	377 aa		13.73	□□□□□ -0.21
PTPN11-204	ENST00000531326	RCHY1	Q96PM5	261 aa		13.73	□□□□□ -0.21
PTPN11-204	ENST00000531326	COA4	Q9NYJ1	87 aa		13.73	□□□□□ -0.21
PTPN11-204	ENST00000531326	CACNG5	Q9UF02	275 aa		13.73	□□□□□ -0.21
PTPN11-204	ENST00000531326	RBMXL2	O75526	392 aa	Known RBP	13.72	□□□□□ -0.21
PTPN11-204	ENST00000531326	SPN	P16150	400 aa		13.72	□□□□□ -0.21
PTPN11-204	ENST00000531326	CTRB1	P17538	263 aa		13.72	□□□□□ -0.21
PTPN11-204	ENST00000531326	PSMB6	P28072	239 aa		13.72	□□□□□ -0.21
PTPN11-204	ENST00000531326	SLURP1	P55000	103 aa		13.72	□□□□□ -0.21
PTPN11-204	ENST00000531326	PRCD	Q00LT1	54 aa		13.72	□□□□□ -0.21
PTPN11-204	ENST00000531326	WT1-AS	Q06250	92 aa		13.72	□□□□□ -0.21
PTPN11-204	ENST00000531326	CTRB2	Q6GPI1	263 aa		13.72	□□□□□ -0.21
PTPN11-204	ENST00000531326	MS4A10	Q96PG2	267 aa		13.72	□□□□□ -0.21
PTPN11-204	ENST00000531326	HINT2	Q9BX68	163 aa		13.72	□□□□□ -0.21
PTPN11-204	ENST00000531326	PALMD	Q9NP74	551 aa		13.72	□□□□□ -0.21
PTPN11-204	ENST00000531326	PIGBOS1	A0A0B4J2F0	54 aa		13.71	□□□□□ -0.21
PTPN11-204	ENST00000531326	SAP30	O75446	220 aa		13.71	□□□□□ -0.21
PTPN11-204	ENST00000531326	PRH1	P02810	166 aa		13.71	□□□□□ -0.21
PTPN11-204	ENST00000531326	REG1A	P05451	166 aa		13.71	□□□□□ -0.21
PTPN11-204	ENST00000531326	COQ8A	Q8NI60	647 aa		13.71	□□□□□ -0.21
PTPN11-204	ENST00000531326	MITD1	Q8WV92	249 aa		13.71	□□□□□ -0.21
PTPN11-204	ENST00000531326	SEC22C	Q9BRL7	303 aa		13.71	□□□□□ -0.21
PTPN11-204	ENST00000531326	SLA2	Q9H6Q3	261 aa		13.71	□□□□□ -0.21
PTPN11-204	ENST00000531326	CTNNBIP1	Q9NSA3	81 aa	Predicted RBP	13.71	□□□□□ -0.21
PTPN11-204	ENST00000531326	ZNF355P	Q9NSJ1	428 aa		13.71	□□□□□ -0.21
PTPN11-204	ENST00000531326	IGHV4OR15-8	A0A075B7B6	117 aa		13.7	□□□□□ -0.22
PTPN11-204	ENST00000531326		A0A087WW49	117 aa		13.7	□□□□□ -0.22
PTPN11-204	ENST00000531326	TRGV3	P03979	118 aa		13.7	□□□□□ -0.22
PTPN11-204	ENST00000531326	IL5	P05113	134 aa		13.7	□□□□□ -0.22
PTPN11-204	ENST00000531326	HOXB5	P09067	269 aa		13.7	□□□□□ -0.22
PTPN11-204	ENST00000531326	FRMD6-AS1	P0C7T7	363 aa		13.7	□□□□□ -0.22
PTPN11-204	ENST00000531326	SULT1A3	P0DMM9	295 aa		13.7	□□□□□ -0.22
PTPN11-204	ENST00000531326	SULT1A4	P0DMN0	295 aa		13.7	□□□□□ -0.22
PTPN11-204	ENST00000531326	TPPP2	P59282	170 aa		13.7	□□□□□ -0.22
PTPN11-204	ENST00000531326	KLK9	Q2XQG4	91 aa		13.7	□□□□□ -0.22
PTPN11-204	ENST00000531326	SPINK9	Q5DT21	86 aa		13.7	□□□□□ -0.22
PTPN11-204	ENST00000531326	HSD17B13	Q7Z5P4	300 aa	Predicted RBP	13.7	□□□□□ -0.22
PTPN11-204	ENST00000531326	MARVELD1	Q9BSK0	173 aa		13.7	□□□□□ -0.22
PTPN11-204	ENST00000531326	KLK9	Q9UKQ9	250 aa		13.7	□□□□□ -0.22
PTPN11-204	ENST00000531326	TMED3	Q9Y3Q3	217 aa		13.7	□□□□□ -0.22
PTPN11-204	ENST00000531326	TRBV9	A0A0B4J1U6	114 aa		13.69	□□□□□ -0.22
PTPN11-204	ENST00000531326		A0A1B0GU03	582 aa		13.69	□□□□□ -0.22
PTPN11-204	ENST00000531326	LINC01619	G3V211	115 aa		13.69	□□□□□ -0.22
PTPN11-204	ENST00000531326	ADAP1	O75689	374 aa		13.69	□□□□□ -0.22
PTPN11-204	ENST00000531326	LGALS1	P09382	135 aa	Known RBP	13.69	□□□□□ -0.22
PTPN11-204	ENST00000531326	OR13C7	P0DN81	318 aa		13.69	□□□□□ -0.22
PTPN11-204	ENST00000531326	GP9	P14770	177 aa		13.69	□□□□□ -0.22
PTPN11-204	ENST00000531326	DEFA5	Q01523	94 aa		13.69	□□□□□ -0.22
PTPN11-204	ENST00000531326	SMCO1	Q147U7	214 aa		13.69	□□□□□ -0.22
PTPN11-204	ENST00000531326	GGNBP1	Q5YKI7	109 aa		13.69	□□□□□ -0.22
PTPN11-204	ENST00000531326	ACSM6	Q6P461	480 aa		13.69	□□□□□ -0.22
PTPN11-204	ENST00000531326	PLET1	Q6UQ28	207 aa		13.69	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms