RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 SLC35G3Q8N808 338 aa11.04□□□□□ -0.64
NUP54-216ENST00000514901 FANCD2OSQ96PS1 177 aa11.04□□□□□ -0.64
NUP54-216ENST00000514901 MCRIP2Q9BUT9 160 aaKnown RBP11.04□□□□□ -0.64
NUP54-216ENST00000514901 FBXL7Q9UJT9 491 aa11.04□□□□□ -0.64
NUP54-216ENST00000514901 FLVCR2Q9UPI3 526 aa11.04□□□□□ -0.64
NUP54-216ENST00000514901 IGLV11-55A0A075B6I3 123 aa11.03□□□□□ -0.64
NUP54-216ENST00000514901 A0A0G2JRQ6 117 aa11.03□□□□□ -0.64
NUP54-216ENST00000514901 FAM240BA0A1B0GVZ2 78 aa11.03□□□□□ -0.64
NUP54-216ENST00000514901 LINC01619G3V211 115 aa11.03□□□□□ -0.64
NUP54-216ENST00000514901 OR2J3O76001 311 aa11.03□□□□□ -0.64
NUP54-216ENST00000514901 TCRBP04435 133 aa11.03□□□□□ -0.64
NUP54-216ENST00000514901 OR4E1P0C645 316 aa11.03□□□□□ -0.64
NUP54-216ENST00000514901 SULT1A3P0DMM9 295 aa11.03□□□□□ -0.64
NUP54-216ENST00000514901 SULT1A4P0DMN0 295 aa11.03□□□□□ -0.64
NUP54-216ENST00000514901 SPCS3P61009 180 aa11.03□□□□□ -0.64
NUP54-216ENST00000514901 C15orf32Q32M92 178 aa11.03□□□□□ -0.64
NUP54-216ENST00000514901 Q6ZRM9 215 aa11.03□□□□□ -0.64
NUP54-216ENST00000514901 LYZL2Q7Z4W2 148 aa11.03□□□□□ -0.64
NUP54-216ENST00000514901 OR2C3Q8N628 320 aa11.03□□□□□ -0.64
NUP54-216ENST00000514901 RCC1LQ96I51 464 aaKnown RBP11.03□□□□□ -0.64
NUP54-216ENST00000514901 DUX3Q96PT4 197 aa11.03□□□□□ -0.64
NUP54-216ENST00000514901 GPR61Q9BZJ8 451 aa11.03□□□□□ -0.64
NUP54-216ENST00000514901 ENY2Q9NPA8 101 aa11.03□□□□□ -0.64
NUP54-216ENST00000514901 PEF1Q9UBV8 284 aaKnown RBP11.03□□□□□ -0.64
NUP54-216ENST00000514901 CACNG5Q9UF02 275 aa11.03□□□□□ -0.64
NUP54-216ENST00000514901 TBC1D24Q9ULP9 559 aa11.03□□□□□ -0.64
NUP54-216ENST00000514901 F11RQ9Y624 299 aaKnown RBP11.03□□□□□ -0.64
NUP54-216ENST00000514901 NOTCH1P46531 2555 aa11.03□□□□□ -0.64
NUP54-216ENST00000514901 A0A1B0GU03 582 aa11.02□□□□□ -0.65
NUP54-216ENST00000514901 C9orf170A2RU37 121 aa11.02□□□□□ -0.65
NUP54-216ENST00000514901 HLA-AP01891 365 aaKnown RBP11.02□□□□□ -0.65
NUP54-216ENST00000514901 SLC25A6P12236 298 aa11.02□□□□□ -0.65
NUP54-216ENST00000514901 ZP3P21754 424 aa11.02□□□□□ -0.65
NUP54-216ENST00000514901 DEFA1P59665 94 aa11.02□□□□□ -0.65
NUP54-216ENST00000514901 DEFA3P59666 94 aa11.02□□□□□ -0.65
NUP54-216ENST00000514901 ANKRD55Q3KP44 614 aa11.02□□□□□ -0.65
NUP54-216ENST00000514901 C4orf46Q504U0 113 aa11.02□□□□□ -0.65
NUP54-216ENST00000514901 PDLIM3Q53GG5 364 aaPredicted RBP11.02□□□□□ -0.65
NUP54-216ENST00000514901 NMSQ5H8A3 153 aa11.02□□□□□ -0.65
NUP54-216ENST00000514901 SLC25A24Q6NUK1 477 aa11.02□□□□□ -0.65
NUP54-216ENST00000514901 LYG2Q86SG7 212 aa11.02□□□□□ -0.65
NUP54-216ENST00000514901 OR1P1Q8NH06 330 aa11.02□□□□□ -0.65
NUP54-216ENST00000514901 COQ8AQ8NI60 647 aa11.02□□□□□ -0.65
NUP54-216ENST00000514901 EEF1AKMT3Q96AZ1 226 aa11.02□□□□□ -0.65
NUP54-216ENST00000514901 CXorf58Q96LI9 332 aa11.02□□□□□ -0.65
NUP54-216ENST00000514901 C20orf85Q9H1P6 137 aa11.02□□□□□ -0.65
NUP54-216ENST00000514901 PRR13Q9NZ81 148 aa11.02□□□□□ -0.65
NUP54-216ENST00000514901 TMED3Q9Y3Q3 217 aa11.02□□□□□ -0.65
NUP54-216ENST00000514901 FBN3Q75N90 2809 aa11.01□□□□□ -0.65
NUP54-216ENST00000514901 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.01□□□□□ -0.65
NUP54-216ENST00000514901 TRBV7-1A0A0A6YYK4 115 aa11.01□□□□□ -0.65
NUP54-216ENST00000514901 ANXA7P20073 488 aaKnown RBP11.01□□□□□ -0.65
NUP54-216ENST00000514901 SNCAP37840 140 aa11.01□□□□□ -0.65
NUP54-216ENST00000514901 SUB1P53999 127 aaKnown RBP eCLIP11.01□□□□□ -0.65
NUP54-216ENST00000514901 DHRS2Q13268 280 aa11.01□□□□□ -0.65
NUP54-216ENST00000514901 EXOSC2Q13868 293 aaKnown RBP11.01□□□□□ -0.65
NUP54-216ENST00000514901 SMCO1Q147U7 214 aa11.01□□□□□ -0.65
NUP54-216ENST00000514901 ZNF114Q8NC26 417 aa11.01□□□□□ -0.65
NUP54-216ENST00000514901 IGHV4OR15-8A0A075B7B6 117 aa11□□□□□ -0.65
NUP54-216ENST00000514901 A0A087WW49 117 aa11□□□□□ -0.65
NUP54-216ENST00000514901 ANKRD34BA5PLL1 514 aa11□□□□□ -0.65
NUP54-216ENST00000514901 NDUFB8O95169 186 aa11□□□□□ -0.65
NUP54-216ENST00000514901 H2AFB2P0C5Z0 115 aa11□□□□□ -0.65
NUP54-216ENST00000514901 HOXA1P49639 335 aaPredicted RBP11□□□□□ -0.65
NUP54-216ENST00000514901 C19orf35Q6ZS72 473 aa11□□□□□ -0.65
NUP54-216ENST00000514901 ENKURQ8TC29 256 aa11□□□□□ -0.65
NUP54-216ENST00000514901 VN1R17PQ8TDU5 208 aa11□□□□□ -0.65
NUP54-216ENST00000514901 NUDT15Q9NV35 164 aa11□□□□□ -0.65
NUP54-216ENST00000514901 TRAV6A0A075B6T7 132 aa10.99□□□□□ -0.65
NUP54-216ENST00000514901 IFNA21P01568 189 aa10.99□□□□□ -0.65
NUP54-216ENST00000514901 DEFA5Q01523 94 aa10.99□□□□□ -0.65
NUP54-216ENST00000514901 IFITM3Q01628 133 aa10.99□□□□□ -0.65
NUP54-216ENST00000514901 TATDN3Q17R31 274 aa10.99□□□□□ -0.65
NUP54-216ENST00000514901 ATP6V0BQ99437 205 aa10.99□□□□□ -0.65
NUP54-216ENST00000514901 DMRT1Q9Y5R6 373 aa10.99□□□□□ -0.65
NUP54-216ENST00000514901 CEBPZOSA8MTT3 80 aa10.98□□□□□ -0.65
NUP54-216ENST00000514901 HOXB5P09067 269 aa10.98□□□□□ -0.65
NUP54-216ENST00000514901 IGLL1P15814 213 aa10.98□□□□□ -0.65
NUP54-216ENST00000514901 HOXD3P31249 432 aaPredicted RBP10.98□□□□□ -0.65
NUP54-216ENST00000514901 TNFRSF9Q07011 255 aa10.98□□□□□ -0.65
NUP54-216ENST00000514901 SPINK9Q5DT21 86 aa10.98□□□□□ -0.65
NUP54-216ENST00000514901 SAMD5Q5TGI4 173 aa10.98□□□□□ -0.65
NUP54-216ENST00000514901 DUSP18Q8NEJ0 188 aa10.98□□□□□ -0.65
NUP54-216ENST00000514901 OR1S1Q8NH92 325 aa10.98□□□□□ -0.65
NUP54-216ENST00000514901 MITD1Q8WV92 249 aa10.98□□□□□ -0.65
NUP54-216ENST00000514901 DCUN1D4Q92564 292 aa10.98□□□□□ -0.65
NUP54-216ENST00000514901 HIPK2Q9H2X6 1198 aa10.98□□□□□ -0.65
NUP54-216ENST00000514901 GAR1Q9NY12 217 aaKnown RBP10.98□□□□□ -0.65
NUP54-216ENST00000514901 HSPB7Q9UBY9 170 aa10.98□□□□□ -0.65
NUP54-216ENST00000514901 FAM90A26D6RGX4 464 aa10.97□□□□□ -0.65
NUP54-216ENST00000514901 CORTO00230 105 aa10.97□□□□□ -0.65
NUP54-216ENST00000514901 OVOL1O14753 267 aa10.97□□□□□ -0.65
NUP54-216ENST00000514901 GGCTO75223 188 aaKnown RBP10.97□□□□□ -0.65
NUP54-216ENST00000514901 PITX3O75364 302 aa10.97□□□□□ -0.65
NUP54-216ENST00000514901 HTR2BP41595 481 aa10.97□□□□□ -0.65
NUP54-216ENST00000514901 SLURP1P55000 103 aa10.97□□□□□ -0.65
NUP54-216ENST00000514901 MFAP2P55001 183 aa10.97□□□□□ -0.65
NUP54-216ENST00000514901 KLF5Q13887 457 aaPredicted RBP10.97□□□□□ -0.65
NUP54-216ENST00000514901 RPEL1Q2QD12 228 aa10.97□□□□□ -0.65
NUP54-216ENST00000514901 GGNBP1Q5YKI7 109 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms