RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 PGLYRP3Q96LB9 341 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 METTL26Q96S19 204 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 METRNQ9UJH8 293 aa3.04□□□□□ -1.92
USP53-205ENST00000509769 TRAV13-2A0A0B4J235 113 aa3.03□□□□□ -1.92
USP53-205ENST00000509769 A0A1B0GTL3 188 aa3.03□□□□□ -1.92
USP53-205ENST00000509769 A6NNC1 897 aa3.03□□□□□ -1.92
USP53-205ENST00000509769 K7ERS5 55 aa3.03□□□□□ -1.92
USP53-205ENST00000509769 LEPP41159 167 aa3.03□□□□□ -1.92
USP53-205ENST00000509769 PFN3P60673 137 aa3.03□□□□□ -1.92
USP53-205ENST00000509769 ZNF252P-AS1Q0IIN9 211 aa3.03□□□□□ -1.92
USP53-205ENST00000509769 UNC119Q13432 240 aa3.03□□□□□ -1.92
USP53-205ENST00000509769 FAM53BQ14153 422 aa3.03□□□□□ -1.92
USP53-205ENST00000509769 C1orf122Q6ZSJ8 110 aa3.03□□□□□ -1.92
USP53-205ENST00000509769 LYZL2Q7Z4W2 148 aa3.03□□□□□ -1.92
USP53-205ENST00000509769 TEN1Q86WV5 123 aa3.03□□□□□ -1.92
USP53-205ENST00000509769 LYPD1Q8N2G4 141 aa3.03□□□□□ -1.92
USP53-205ENST00000509769 NKAPP1Q8N9T2 125 aa3.03□□□□□ -1.92
USP53-205ENST00000509769 C1orf162Q8NEQ5 155 aaPredicted RBP3.03□□□□□ -1.92
USP53-205ENST00000509769 NUDT8Q8WV74 236 aa3.03□□□□□ -1.92
USP53-205ENST00000509769 NPIPB3Q92617 1050 aa3.03□□□□□ -1.92
USP53-205ENST00000509769 ZNF319Q9P2F9 582 aa3.03□□□□□ -1.92
USP53-205ENST00000509769 LOXL2Q9Y4K0 774 aa3.03□□□□□ -1.92
USP53-205ENST00000509769 HILPDAQ9Y5L2 63 aa3.03□□□□□ -1.92
USP53-205ENST00000509769 COL4A6Q14031 1691 aa3.03□□□□□ -1.92
USP53-205ENST00000509769 IGLC7A0M8Q6 106 aa3.03□□□□□ -1.92
USP53-205ENST00000509769 F12P00748 615 aaPredicted RBP3.03□□□□□ -1.92
USP53-205ENST00000509769 C1QCP02747 245 aa3.03□□□□□ -1.92
USP53-205ENST00000509769 ARL14EPLP0DKL9 152 aa3.03□□□□□ -1.92
USP53-205ENST00000509769 HLA-DRB4P13762 266 aa3.03□□□□□ -1.92
USP53-205ENST00000509769 ZNF708P17019 499 aa3.03□□□□□ -1.92
USP53-205ENST00000509769 LMO2P25791 158 aa3.03□□□□□ -1.92
USP53-205ENST00000509769 KLF5Q13887 457 aaPredicted RBP3.03□□□□□ -1.92
USP53-205ENST00000509769 SP6Q3SY56 376 aa3.03□□□□□ -1.92
USP53-205ENST00000509769 ZNRF1Q8ND25 227 aa3.03□□□□□ -1.92
USP53-205ENST00000509769 TMEM171Q8WVE6 324 aa3.03□□□□□ -1.92
USP53-205ENST00000509769 H1FXQ92522 213 aaKnown RBP3.03□□□□□ -1.92
USP53-205ENST00000509769 EMID1Q96A84 441 aaPredicted RBP3.03□□□□□ -1.92
USP53-205ENST00000509769 YPEL4Q96NS1 127 aa3.03□□□□□ -1.92
USP53-205ENST00000509769 PDFQ9HBH1 243 aa3.03□□□□□ -1.92
USP53-205ENST00000509769 ZNF492Q9P255 531 aa3.03□□□□□ -1.92
USP53-205ENST00000509769 JPT1Q9UK76 154 aa3.03□□□□□ -1.92
USP53-205ENST00000509769 ATP23Q9Y6H3 246 aa3.03□□□□□ -1.92
USP53-205ENST00000509769 HLA-DRB4X5D2U9 266 aa3.03□□□□□ -1.92
USP53-205ENST00000509769 SMIM26A0A096LP01 95 aa3.03□□□□□ -1.92
USP53-205ENST00000509769 M0QZQ0 153 aa3.03□□□□□ -1.92
USP53-205ENST00000509769 CD52P31358 61 aa3.03□□□□□ -1.92
USP53-205ENST00000509769 DSCR4P56555 118 aaPredicted RBP3.03□□□□□ -1.92
USP53-205ENST00000509769 GNB1P62873 340 aa3.03□□□□□ -1.92
USP53-205ENST00000509769 DPTQ07507 201 aa3.03□□□□□ -1.92
USP53-205ENST00000509769 GUSBP1Q15486 140 aa3.03□□□□□ -1.92
USP53-205ENST00000509769 BCDIN3DQ7Z5W3 292 aaKnown RBP3.03□□□□□ -1.92
USP53-205ENST00000509769 BCORP1Q8N888 145 aa3.03□□□□□ -1.92
USP53-205ENST00000509769 ZNF721Q8TF20 911 aa3.03□□□□□ -1.92
USP53-205ENST00000509769 PRSS27Q9BQR3 290 aa3.03□□□□□ -1.92
USP53-205ENST00000509769 RTBDNQ9BSG5 229 aaPredicted RBP3.03□□□□□ -1.92
USP53-205ENST00000509769 APOOQ9BUR5 198 aa3.03□□□□□ -1.92
USP53-205ENST00000509769 HEXA-AS1Q9H8Q6 139 aa3.03□□□□□ -1.92
USP53-205ENST00000509769 PEMTQ9UBM1 199 aa3.03□□□□□ -1.92
USP53-205ENST00000509769 POLR3KQ9Y2Y1 108 aaPredicted RBP3.03□□□□□ -1.92
USP53-205ENST00000509769 U3KQE9 123 aa3.03□□□□□ -1.92
USP53-205ENST00000509769 POLR2AP24928 1970 aaKnown RBP3.03□□□□□ -1.92
USP53-205ENST00000509769 NUP98P52948 1817 aa3.03□□□□□ -1.92
USP53-205ENST00000509769 MUC21A0A0G2JKD1 596 aa3.03□□□□□ -1.93
USP53-205ENST00000509769 MUC21A0A140T8X8 626 aa3.03□□□□□ -1.93
USP53-205ENST00000509769 NPIPB11E5RHQ5 1161 aa3.03□□□□□ -1.93
USP53-205ENST00000509769 H0YGX0 51 aa3.03□□□□□ -1.93
USP53-205ENST00000509769 ZIC3O60481 467 aa3.03□□□□□ -1.93
USP53-205ENST00000509769 WISP1O95388 367 aa3.03□□□□□ -1.93
USP53-205ENST00000509769 NPSP0C0P6 89 aa3.03□□□□□ -1.93
USP53-205ENST00000509769 C3orf79P0CE67 100 aa3.03□□□□□ -1.93
USP53-205ENST00000509769 SLC25A16P16260 332 aa3.03□□□□□ -1.93
USP53-205ENST00000509769 LIM2P55344 173 aa3.03□□□□□ -1.93
USP53-205ENST00000509769 GNB2P62879 340 aa3.03□□□□□ -1.93
USP53-205ENST00000509769 FOXC1Q12948 553 aa3.03□□□□□ -1.93
USP53-205ENST00000509769 MUC21Q5SSG8 566 aa3.03□□□□□ -1.93
USP53-205ENST00000509769 DCAF12L2Q5VW00 463 aa3.03□□□□□ -1.93
USP53-205ENST00000509769 PCSK4Q6UW60 755 aa3.03□□□□□ -1.93
USP53-205ENST00000509769 LINC00305Q7Z4B0 112 aa3.03□□□□□ -1.93
USP53-205ENST00000509769 SARAFQ96BY9 339 aa3.03□□□□□ -1.93
USP53-205ENST00000509769 KLK13Q9UKR3 277 aa3.03□□□□□ -1.93
USP53-205ENST00000509769 FZR1Q9UM11 496 aa3.03□□□□□ -1.93
USP53-205ENST00000509769 SIT1Q9Y3P8 196 aa3.03□□□□□ -1.93
USP53-205ENST00000509769 TRBV5-4A0A0C4DH59 114 aa3.02□□□□□ -1.93
USP53-205ENST00000509769 FAM236DA0A1B0GTK5 79 aa3.02□□□□□ -1.93
USP53-205ENST00000509769 F5H768 121 aa3.02□□□□□ -1.93
USP53-205ENST00000509769 JMJD7-PLA2G4BH0Y9G9 81 aa3.02□□□□□ -1.93
USP53-205ENST00000509769 IGHG3P01860 377 aa3.02□□□□□ -1.93
USP53-205ENST00000509769 FAM236CP0DP71 79 aa3.02□□□□□ -1.93
USP53-205ENST00000509769 CTLA4P16410 223 aa3.02□□□□□ -1.93
USP53-205ENST00000509769 TIMP3P35625 211 aa3.02□□□□□ -1.93
USP53-205ENST00000509769 TNFRSF4P43489 277 aa3.02□□□□□ -1.93
USP53-205ENST00000509769 CXorf66Q5JRM2 361 aaPredicted RBP3.02□□□□□ -1.93
USP53-205ENST00000509769 BHLHA9Q7RTU4 235 aa3.02□□□□□ -1.93
USP53-205ENST00000509769 ABHD12Q8N2K0 398 aa3.02□□□□□ -1.93
USP53-205ENST00000509769 C3orf22Q8N5N4 141 aa3.02□□□□□ -1.93
USP53-205ENST00000509769 TMEM105Q8N8V8 129 aa3.02□□□□□ -1.93
USP53-205ENST00000509769 GATD1Q8NB37 220 aa3.02□□□□□ -1.93
USP53-205ENST00000509769 NABP2Q9BQ15 211 aa3.02□□□□□ -1.93
USP53-205ENST00000509769 RNF39Q9H2S5 420 aa3.02□□□□□ -1.93
USP53-205ENST00000509769 CRIM1Q9NZV1 1036 aa3.02□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms