RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 CTRB2Q6GPI1 263 aa9.28□□□□□ -0.92
CUX1-210ENST00000497815 SHISA2Q6UWI4 295 aa9.28□□□□□ -0.92
CUX1-210ENST00000497815 MRPL41Q8IXM3 137 aaKnown RBP9.28□□□□□ -0.92
CUX1-210ENST00000497815 OR52E5Q8NH55 327 aa9.28□□□□□ -0.92
CUX1-210ENST00000497815 OR5B12Q96R08 314 aa9.28□□□□□ -0.92
CUX1-210ENST00000497815 MAGT1Q9H0U3 335 aa9.28□□□□□ -0.92
CUX1-210ENST00000497815 RBKSQ9H477 322 aa9.28□□□□□ -0.92
CUX1-210ENST00000497815 HEYLQ9NQ87 328 aaPredicted RBP9.28□□□□□ -0.92
CUX1-210ENST00000497815 HSPB7Q9UBY9 170 aa9.28□□□□□ -0.92
CUX1-210ENST00000497815 NUDT19A8MXV4 375 aa9.27□□□□□ -0.93
CUX1-210ENST00000497815 OR2J3O76001 311 aa9.27□□□□□ -0.93
CUX1-210ENST00000497815 CRYGCP07315 174 aa9.27□□□□□ -0.93
CUX1-210ENST00000497815 ERHP84090 104 aaKnown RBP9.27□□□□□ -0.93
CUX1-210ENST00000497815 CD83Q01151 205 aa9.27□□□□□ -0.93
CUX1-210ENST00000497815 GSG1LQ6UXU4 331 aa9.27□□□□□ -0.93
CUX1-210ENST00000497815 C18orf65Q6ZTR6 163 aa9.27□□□□□ -0.93
CUX1-210ENST00000497815 OR2C3Q8N628 320 aa9.27□□□□□ -0.93
CUX1-210ENST00000497815 ZBTB8BQ8NAP8 495 aaPredicted RBP9.27□□□□□ -0.93
CUX1-210ENST00000497815 DTD1Q8TEA8 209 aa9.27□□□□□ -0.93
CUX1-210ENST00000497815 SLA2Q9H6Q3 261 aa9.27□□□□□ -0.93
CUX1-210ENST00000497815 TSSC4Q9Y5U2 329 aaPredicted RBP9.27□□□□□ -0.93
CUX1-210ENST00000497815 PLXNB1O43157 2135 aa9.26□□□□□ -0.93
CUX1-210ENST00000497815 H3BUA1 57 aa9.26□□□□□ -0.93
CUX1-210ENST00000497815 IGHV3-11P01762 117 aa9.26□□□□□ -0.93
CUX1-210ENST00000497815 IAPPP10997 89 aa9.26□□□□□ -0.93
CUX1-210ENST00000497815 SNCAP37840 140 aa9.26□□□□□ -0.93
CUX1-210ENST00000497815 RPL23AP62750 156 aaKnown RBP9.26□□□□□ -0.93
CUX1-210ENST00000497815 RHOGP84095 191 aa9.26□□□□□ -0.93
CUX1-210ENST00000497815 PDLIM3Q53GG5 364 aaPredicted RBP9.26□□□□□ -0.93
CUX1-210ENST00000497815 SLC25A24Q6NUK1 477 aa9.26□□□□□ -0.93
CUX1-210ENST00000497815 RNF152Q8N8N0 203 aa9.26□□□□□ -0.93
CUX1-210ENST00000497815 KLHL30-AS1Q8NEE0 82 aa9.26□□□□□ -0.93
CUX1-210ENST00000497815 OR4D5Q8NGN0 318 aa9.26□□□□□ -0.93
CUX1-210ENST00000497815 C2orf50Q96LR7 162 aa9.26□□□□□ -0.93
CUX1-210ENST00000497815 P2RX4Q99571 388 aa9.26□□□□□ -0.93
CUX1-210ENST00000497815 HIPK2Q9H2X6 1198 aa9.26□□□□□ -0.93
CUX1-210ENST00000497815 GNB4Q9HAV0 340 aa9.26□□□□□ -0.93
CUX1-210ENST00000497815 MGAT4CQ9UBM8 478 aa9.26□□□□□ -0.93
CUX1-210ENST00000497815 CACFD1Q9UGQ2 172 aa9.26□□□□□ -0.93
CUX1-210ENST00000497815 FBXL7Q9UJT9 491 aa9.26□□□□□ -0.93
CUX1-210ENST00000497815 DMRT1Q9Y5R6 373 aa9.26□□□□□ -0.93
CUX1-210ENST00000497815 F11RQ9Y624 299 aaKnown RBP9.26□□□□□ -0.93
CUX1-210ENST00000497815 FAM90A26D6RGX4 464 aa9.25□□□□□ -0.93
CUX1-210ENST00000497815 WRBO00258 174 aa9.25□□□□□ -0.93
CUX1-210ENST00000497815 SYNGR2O43760 224 aa9.25□□□□□ -0.93
CUX1-210ENST00000497815 NDUFB8O95169 186 aa9.25□□□□□ -0.93
CUX1-210ENST00000497815 NKX2-1P43699 371 aaPredicted RBP9.25□□□□□ -0.93
CUX1-210ENST00000497815 MFAP2P55001 183 aa9.25□□□□□ -0.93
CUX1-210ENST00000497815 POLR2GP62487 172 aaKnown RBP eCLIP9.25□□□□□ -0.93
CUX1-210ENST00000497815 KIAA0141Q14154 515 aaPredicted RBP9.25□□□□□ -0.93
CUX1-210ENST00000497815 NDUFA11Q86Y39 141 aa9.25□□□□□ -0.93
CUX1-210ENST00000497815 ZNF491Q8N8L2 437 aa9.25□□□□□ -0.93
CUX1-210ENST00000497815 MISP3Q96FF7 219 aa9.25□□□□□ -0.93
CUX1-210ENST00000497815 FANCD2OSQ96PS1 177 aa9.25□□□□□ -0.93
CUX1-210ENST00000497815 MED28Q9H204 178 aa9.25□□□□□ -0.93
CUX1-210ENST00000497815 ZFP57Q9NU63 452 aa9.25□□□□□ -0.93
CUX1-210ENST00000497815 S4R3C0 116 aa9.25□□□□□ -0.93
CUX1-210ENST00000497815 TET2Q6N021 2002 aaPredicted RBP9.24□□□□□ -0.93
CUX1-210ENST00000497815 IGLV11-55A0A075B6I3 123 aa9.24□□□□□ -0.93
CUX1-210ENST00000497815 TRBV9A0A0B4J1U6 114 aa9.24□□□□□ -0.93
CUX1-210ENST00000497815 IGHV3-21A0A0B4J1V1 117 aa9.24□□□□□ -0.93
CUX1-210ENST00000497815 FAM223BA6NKX1 122 aa9.24□□□□□ -0.93
CUX1-210ENST00000497815 ADARB2-AS1A8MUL3 147 aa9.24□□□□□ -0.93
CUX1-210ENST00000497815 INS-IGF2F8WCM5 200 aa9.24□□□□□ -0.93
CUX1-210ENST00000497815 CYB5BO43169 146 aa9.24□□□□□ -0.93
CUX1-210ENST00000497815 SSSCA1O60232 199 aa9.24□□□□□ -0.93
CUX1-210ENST00000497815 MED6O75586 246 aa9.24□□□□□ -0.93
CUX1-210ENST00000497815 IFNA10P01566 189 aa9.24□□□□□ -0.93
CUX1-210ENST00000497815 IGHV3-23P01764 117 aa9.24□□□□□ -0.93
CUX1-210ENST00000497815 RNASE2P10153 161 aaKnown RBP9.24□□□□□ -0.93
CUX1-210ENST00000497815 HIST1H1BP16401 226 aaKnown RBP9.24□□□□□ -0.93
CUX1-210ENST00000497815 SUB1P53999 127 aaKnown RBP eCLIP9.24□□□□□ -0.93
CUX1-210ENST00000497815 S100A10P60903 97 aa9.24□□□□□ -0.93
CUX1-210ENST00000497815 ID3Q02535 119 aa9.24□□□□□ -0.93
CUX1-210ENST00000497815 ATP5G2Q06055 141 aa9.24□□□□□ -0.93
CUX1-210ENST00000497815 DEFB136Q30KP8 78 aa9.24□□□□□ -0.93
CUX1-210ENST00000497815 C15orf32Q32M92 178 aa9.24□□□□□ -0.93
CUX1-210ENST00000497815 C8orf86Q6ZUL3 223 aa9.24□□□□□ -0.93
CUX1-210ENST00000497815 FAM223AQ8IWN6 122 aa9.24□□□□□ -0.93
CUX1-210ENST00000497815 NECAP1Q8NC96 275 aa9.24□□□□□ -0.93
CUX1-210ENST00000497815 OR1P1Q8NH06 330 aa9.24□□□□□ -0.93
CUX1-210ENST00000497815 MYOZ3Q8TDC0 251 aa9.24□□□□□ -0.93
CUX1-210ENST00000497815 PINX1Q96BK5 328 aaKnown RBP9.24□□□□□ -0.93
CUX1-210ENST00000497815 UBE2E2Q96LR5 201 aa9.24□□□□□ -0.93
CUX1-210ENST00000497815 LSM5Q9Y4Y9 91 aaKnown RBP9.24□□□□□ -0.93
CUX1-210ENST00000497815 TNCP24821 2201 aa9.23□□□□□ -0.93
CUX1-210ENST00000497815 A0A0G2JLM5 398 aa9.23□□□□□ -0.93
CUX1-210ENST00000497815 ANKRD34BA5PLL1 514 aa9.23□□□□□ -0.93
CUX1-210ENST00000497815 H3BP45 60 aa9.23□□□□□ -0.93
CUX1-210ENST00000497815 BRI3O95415 125 aa9.23□□□□□ -0.93
CUX1-210ENST00000497815 MBPP02686 304 aaPredicted RBP9.23□□□□□ -0.93
CUX1-210ENST00000497815 HTR2BP41595 481 aa9.23□□□□□ -0.93
CUX1-210ENST00000497815 CDX1P47902 265 aaPredicted RBP9.23□□□□□ -0.93
CUX1-210ENST00000497815 H2BFSP57053 126 aa9.23□□□□□ -0.93
CUX1-210ENST00000497815 EXOSC2Q13868 293 aaKnown RBP9.23□□□□□ -0.93
CUX1-210ENST00000497815 FCN2Q15485 313 aa9.23□□□□□ -0.93
CUX1-210ENST00000497815 ZNF114Q8NC26 417 aa9.23□□□□□ -0.93
CUX1-210ENST00000497815 SLC24A4Q8NFF2 622 aa9.23□□□□□ -0.93
CUX1-210ENST00000497815 OR1L6Q8NGR2 347 aa9.23□□□□□ -0.93
CUX1-210ENST00000497815 SPATA3Q8NHX4 192 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms