RNA–Protein interactions for RNA: ENST00000496826.1

USF3-204, Transcript of upstream transcription factor family member 3, humanhuman

TSL 1 (best)

Gene USF3, Length 8,397 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-204ENST00000496826 COL9A1P20849 921 aa4.97□□□□□ -1.61
USF3-204ENST00000496826 PRR20EP86478 221 aa4.97□□□□□ -1.61
USF3-204ENST00000496826 PRR20CP86479 221 aa4.97□□□□□ -1.61
USF3-204ENST00000496826 PRR20DP86480 221 aa4.97□□□□□ -1.61
USF3-204ENST00000496826 PRR20BP86481 221 aa4.97□□□□□ -1.61
USF3-204ENST00000496826 PRR20AP86496 221 aa4.97□□□□□ -1.61
USF3-204ENST00000496826 NKAIN2Q5VXU1 208 aa4.97□□□□□ -1.61
USF3-204ENST00000496826 PRIMA1Q86XR5 153 aa4.97□□□□□ -1.61
USF3-204ENST00000496826 PPDPFLQ8WWR9 84 aa4.97□□□□□ -1.61
USF3-204ENST00000496826 KLK9Q9UKQ9 250 aa4.97□□□□□ -1.61
USF3-204ENST00000496826 ARHGEF5Q12774 1597 aa4.97□□□□□ -1.61
USF3-204ENST00000496826 A0A0A6YYD5 115 aa4.97□□□□□ -1.61
USF3-204ENST00000496826 CENPVL3A0A0U1RRI6 287 aa4.97□□□□□ -1.61
USF3-204ENST00000496826 A0A1W2PPZ6 126 aa4.97□□□□□ -1.61
USF3-204ENST00000496826 LINC01619G3V211 115 aa4.97□□□□□ -1.61
USF3-204ENST00000496826 MOSP00540 346 aa4.97□□□□□ -1.61
USF3-204ENST00000496826 TIMP1P01033 207 aa4.97□□□□□ -1.61
USF3-204ENST00000496826 TRBV12-3P01733 135 aa4.97□□□□□ -1.61
USF3-204ENST00000496826 IMMP2LQ96T52 175 aa4.97□□□□□ -1.61
USF3-204ENST00000496826 VKORC1Q9BQB6 163 aa4.97□□□□□ -1.61
USF3-204ENST00000496826 MFRPQ9BY79 579 aa4.97□□□□□ -1.61
USF3-204ENST00000496826 TRBV25-1A0A075B6N4 114 aa4.96□□□□□ -1.61
USF3-204ENST00000496826 NDUFA3O95167 84 aa4.96□□□□□ -1.61
USF3-204ENST00000496826 TRAV24A0A0B4J272 114 aa4.96□□□□□ -1.61
USF3-204ENST00000496826 IGLL5B9A064 214 aa4.96□□□□□ -1.61
USF3-204ENST00000496826 BAALC-AS2P0C853 105 aa4.96□□□□□ -1.61
USF3-204ENST00000496826 IGFBP3P17936 291 aaPredicted RBP4.96□□□□□ -1.61
USF3-204ENST00000496826 EMDP50402 254 aa4.96□□□□□ -1.61
USF3-204ENST00000496826 C1orf159Q96HA4 380 aa4.96□□□□□ -1.61
USF3-204ENST00000496826 TIMM21Q9BVV7 248 aa4.96□□□□□ -1.61
USF3-204ENST00000496826 NUP153P49790 1475 aaKnown RBP4.96□□□□□ -1.62
USF3-204ENST00000496826 C9orf170A2RU37 121 aa4.96□□□□□ -1.62
USF3-204ENST00000496826 TMEM141Q96I45 108 aa4.96□□□□□ -1.62
USF3-204ENST00000496826 COL6A6A6NMZ7 2263 aa4.96□□□□□ -1.62
USF3-204ENST00000496826 TDRD15B5MCY1 1934 aaKnown RBP4.96□□□□□ -1.62
USF3-204ENST00000496826 CXCL13O43927 109 aa4.96□□□□□ -1.62
USF3-204ENST00000496826 GFERP55789 205 aa4.96□□□□□ -1.62
USF3-204ENST00000496826 SPSB3Q6PJ21 355 aa4.96□□□□□ -1.62
USF3-204ENST00000496826 ISCA2Q86U28 154 aa4.96□□□□□ -1.62
USF3-204ENST00000496826 ORMDL1Q9P0S3 153 aa4.96□□□□□ -1.62
USF3-204ENST00000496826 DCCP43146 1447 aa4.96□□□□□ -1.62
USF3-204ENST00000496826 A0A0U1RQV1 116 aa4.96□□□□□ -1.62
USF3-204ENST00000496826 SDHDO14521 159 aa4.96□□□□□ -1.62
USF3-204ENST00000496826 ZNF32P17041 273 aa4.96□□□□□ -1.62
USF3-204ENST00000496826 SHISA6Q6ZSJ9 500 aa4.96□□□□□ -1.62
USF3-204ENST00000496826 COX14Q96I36 57 aa4.96□□□□□ -1.62
USF3-204ENST00000496826 MMP25Q9NPA2 562 aa4.96□□□□□ -1.62
USF3-204ENST00000496826 WNK1Q9H4A3 2382 aa4.96□□□□□ -1.62
USF3-204ENST00000496826 ARHGAP23Q9P227 1491 aa4.96□□□□□ -1.62
USF3-204ENST00000496826 A0A1W2PQD3 144 aa4.96□□□□□ -1.62
USF3-204ENST00000496826 A0A1W2PRD5 423 aa4.96□□□□□ -1.62
USF3-204ENST00000496826 A0A1W2PRS3 328 aa4.96□□□□□ -1.62
USF3-204ENST00000496826 EWSR1Q01844 656 aaKnown RBP eCLIP4.96□□□□□ -1.62
USF3-204ENST00000496826 RPL18Q07020 188 aaKnown RBP4.96□□□□□ -1.62
USF3-204ENST00000496826 THSD4Q6ZMP0 1018 aa4.96□□□□□ -1.62
USF3-204ENST00000496826 TMEM170AQ8WVE7 144 aa4.96□□□□□ -1.62
USF3-204ENST00000496826 FGF20Q9NP95 211 aaPredicted RBP4.96□□□□□ -1.62
USF3-204ENST00000496826 TBC1D29Q9UFV1 150 aa4.96□□□□□ -1.62
USF3-204ENST00000496826 FOXA2Q9Y261 457 aaPredicted RBP4.96□□□□□ -1.62
USF3-204ENST00000496826 C1orf167Q5SNV9 1468 aa4.96□□□□□ -1.62
USF3-204ENST00000496826 NDUFS7O75251 213 aa4.96□□□□□ -1.62
USF3-204ENST00000496826 PTGDSP41222 190 aa4.96□□□□□ -1.62
USF3-204ENST00000496826 ANXA2RQ3ZCQ2 193 aa4.96□□□□□ -1.62
USF3-204ENST00000496826 HIGD2BQ4VC39 106 aa4.96□□□□□ -1.62
USF3-204ENST00000496826 FAM214BQ7L5A3 538 aa4.96□□□□□ -1.62
USF3-204ENST00000496826 RHOVQ96L33 236 aa4.96□□□□□ -1.62
USF3-204ENST00000496826 SLC25A39Q9BZJ4 359 aaPredicted RBP4.96□□□□□ -1.62
USF3-204ENST00000496826 ZNF703Q9H7S9 590 aaPredicted RBP4.96□□□□□ -1.62
USF3-204ENST00000496826 ZNF492Q9P255 531 aa4.96□□□□□ -1.62
USF3-204ENST00000496826 ZCCHC11Q5TAX3 1644 aaKnown RBP4.95□□□□□ -1.62
USF3-204ENST00000496826 TCL1BO95988 128 aa4.95□□□□□ -1.62
USF3-204ENST00000496826 C3orf22Q8N5N4 141 aa4.95□□□□□ -1.62
USF3-204ENST00000496826 OR8D4Q8NGM9 314 aa4.95□□□□□ -1.62
USF3-204ENST00000496826 FGFBP3Q8TAT2 258 aa4.95□□□□□ -1.62
USF3-204ENST00000496826 GATA6Q92908 595 aa4.95□□□□□ -1.62
USF3-204ENST00000496826 FBLN5Q9UBX5 448 aa4.95□□□□□ -1.62
USF3-204ENST00000496826 PRDM15P57071 1507 aaPredicted RBP4.95□□□□□ -1.62
USF3-204ENST00000496826 CEP290O15078 2479 aa4.95□□□□□ -1.62
USF3-204ENST00000496826 SHISA9B4DS77 424 aa4.95□□□□□ -1.62
USF3-204ENST00000496826 H0YL77 283 aa4.95□□□□□ -1.62
USF3-204ENST00000496826 AZU1P20160 251 aa4.95□□□□□ -1.62
USF3-204ENST00000496826 RNASE4P34096 147 aaKnown RBP4.95□□□□□ -1.62
USF3-204ENST00000496826 LPAL2Q16609 132 aa4.95□□□□□ -1.62
USF3-204ENST00000496826 RFLNAQ6ZTI6 216 aa4.95□□□□□ -1.62
USF3-204ENST00000496826 LSM4Q9Y4Z0 139 aaKnown RBP4.95□□□□□ -1.62
USF3-204ENST00000496826 SHROOM3Q8TF72 1996 aa4.95□□□□□ -1.62
USF3-204ENST00000496826 H0YGX0 51 aa4.95□□□□□ -1.62
USF3-204ENST00000496826 DAD1P61803 113 aa4.95□□□□□ -1.62
USF3-204ENST00000496826 ZCCHC24Q8N2G6 241 aaKnown RBP4.95□□□□□ -1.62
USF3-204ENST00000496826 TMEM222Q9H0R3 208 aa4.95□□□□□ -1.62
USF3-204ENST00000496826 CYTL1Q9NRR1 136 aa4.95□□□□□ -1.62
USF3-204ENST00000496826 DOCK11Q5JSL3 2073 aa4.95□□□□□ -1.62
USF3-204ENST00000496826 RND2P52198 227 aa4.95□□□□□ -1.62
USF3-204ENST00000496826 NREPQ16612 68 aa4.95□□□□□ -1.62
USF3-204ENST00000496826 C15orf53Q8NAA6 179 aa4.95□□□□□ -1.62
USF3-204ENST00000496826 TMEM254Q8TBM7 123 aa4.95□□□□□ -1.62
USF3-204ENST00000496826 FAM168AQ92567 244 aa4.95□□□□□ -1.62
USF3-204ENST00000496826 BADQ92934 168 aa4.95□□□□□ -1.62
USF3-204ENST00000496826 POLR2AP24928 1970 aaKnown RBP4.95□□□□□ -1.62
USF3-204ENST00000496826 DNAJC25-GNG10A0A024R161 153 aa4.95□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms