RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 PRRX1P54821 245 aa8.7□□□□□ -1.02
USP4-214ENST00000491791 ELLP55199 621 aaPredicted RBP8.7□□□□□ -1.02
USP4-214ENST00000491791 RPL8P62917 257 aaKnown RBP8.7□□□□□ -1.02
USP4-214ENST00000491791 PRR20EP86478 221 aa8.7□□□□□ -1.02
USP4-214ENST00000491791 PRR20CP86479 221 aa8.7□□□□□ -1.02
USP4-214ENST00000491791 PRR20DP86480 221 aa8.7□□□□□ -1.02
USP4-214ENST00000491791 PRR20BP86481 221 aa8.7□□□□□ -1.02
USP4-214ENST00000491791 PRR20AP86496 221 aa8.7□□□□□ -1.02
USP4-214ENST00000491791 PAX2Q02962 417 aa8.7□□□□□ -1.02
USP4-214ENST00000491791 SPINK9Q5DT21 86 aa8.7□□□□□ -1.02
USP4-214ENST00000491791 CYP2G1PQ6ZSU1 146 aa8.7□□□□□ -1.02
USP4-214ENST00000491791 TMEM144Q7Z5S9 345 aa8.7□□□□□ -1.02
USP4-214ENST00000491791 TEX45Q8NA69 505 aa8.7□□□□□ -1.02
USP4-214ENST00000491791 OR10X1Q8NGY0 326 aa8.7□□□□□ -1.02
USP4-214ENST00000491791 H1FXQ92522 213 aaKnown RBP8.7□□□□□ -1.02
USP4-214ENST00000491791 RAB1BQ9H0U4 201 aa8.7□□□□□ -1.02
USP4-214ENST00000491791 PUS1Q9Y606 427 aaKnown RBP eCLIP8.7□□□□□ -1.02
USP4-214ENST00000491791 ARL2-SNX15V9GYD0 113 aa8.7□□□□□ -1.02
USP4-214ENST00000491791 CSMD2Q7Z408 3487 aa8.7□□□□□ -1.02
USP4-214ENST00000491791 HIVEP1P15822 2718 aa8.69□□□□□ -1.02
USP4-214ENST00000491791 A0A1W2PN81 502 aa8.69□□□□□ -1.02
USP4-214ENST00000491791 IFNA4P05014 189 aa8.69□□□□□ -1.02
USP4-214ENST00000491791 CRYGBP07316 175 aa8.69□□□□□ -1.02
USP4-214ENST00000491791 RNASE2P10153 161 aaKnown RBP8.69□□□□□ -1.02
USP4-214ENST00000491791 CHRNA7P36544 502 aa8.69□□□□□ -1.02
USP4-214ENST00000491791 CDSNQ15517 529 aa8.69□□□□□ -1.02
USP4-214ENST00000491791 TGIF2LXQ8IUE1 241 aa8.69□□□□□ -1.02
USP4-214ENST00000491791 RNASEH2CQ8TDP1 164 aaKnown RBP8.69□□□□□ -1.02
USP4-214ENST00000491791 CTDSP1Q9GZU7 261 aa8.69□□□□□ -1.02
USP4-214ENST00000491791 MLXQ9UH92 298 aa8.69□□□□□ -1.02
USP4-214ENST00000491791 NAT8Q9UHE5 227 aa8.69□□□□□ -1.02
USP4-214ENST00000491791 SLC45A2Q9UMX9 530 aa8.69□□□□□ -1.02
USP4-214ENST00000491791 PXMP4Q9Y6I8 212 aa8.69□□□□□ -1.02
USP4-214ENST00000491791 MTORP42345 2549 aa8.69□□□□□ -1.02
USP4-214ENST00000491791 hCG_1809904A0A1W2PP81 198 aa8.68□□□□□ -1.02
USP4-214ENST00000491791 A0A1W2PPE2 198 aa8.68□□□□□ -1.02
USP4-214ENST00000491791 A0A1W2PR64 198 aa8.68□□□□□ -1.02
USP4-214ENST00000491791 A0A1W2PRV1 198 aa8.68□□□□□ -1.02
USP4-214ENST00000491791 ZFP92A6NM28 416 aa8.68□□□□□ -1.02
USP4-214ENST00000491791 LY6LH3BQJ8 138 aa8.68□□□□□ -1.02
USP4-214ENST00000491791 VENTXO95231 258 aa8.68□□□□□ -1.02
USP4-214ENST00000491791 FBP1P09467 338 aa8.68□□□□□ -1.02
USP4-214ENST00000491791 LINC00869P0C866 280 aa8.68□□□□□ -1.02
USP4-214ENST00000491791 RAB5AP20339 215 aa8.68□□□□□ -1.02
USP4-214ENST00000491791 FGF8P55075 233 aaPredicted RBP8.68□□□□□ -1.02
USP4-214ENST00000491791 ERVFRD-1P60508 538 aa8.68□□□□□ -1.02
USP4-214ENST00000491791 ERHP84090 104 aaKnown RBP8.68□□□□□ -1.02
USP4-214ENST00000491791 MRGPRG-AS1Q2M3A8 158 aa8.68□□□□□ -1.02
USP4-214ENST00000491791 HLA-DRB5Q30154 266 aa8.68□□□□□ -1.02
USP4-214ENST00000491791 VMA21Q3ZAQ7 101 aa8.68□□□□□ -1.02
USP4-214ENST00000491791 SMUG1Q53HV7 270 aa8.68□□□□□ -1.02
USP4-214ENST00000491791 C1orf122Q6ZSJ8 110 aa8.68□□□□□ -1.02
USP4-214ENST00000491791 ZNF114Q8NC26 417 aa8.68□□□□□ -1.02
USP4-214ENST00000491791 SLC35E1Q96K37 410 aa8.68□□□□□ -1.02
USP4-214ENST00000491791 HARBI1Q96MB7 349 aa8.68□□□□□ -1.02
USP4-214ENST00000491791 SSX3Q99909 188 aa8.68□□□□□ -1.02
USP4-214ENST00000491791 SPOCK3Q9BQ16 436 aa8.68□□□□□ -1.02
USP4-214ENST00000491791 CLEC7AQ9BXN2 247 aa8.68□□□□□ -1.02
USP4-214ENST00000491791 COMMD5Q9GZQ3 224 aa8.68□□□□□ -1.02
USP4-214ENST00000491791 SLC25A22Q9H936 323 aa8.68□□□□□ -1.02
USP4-214ENST00000491791 IGHV2-26A0A0B4J1V2 119 aa8.67□□□□□ -1.02
USP4-214ENST00000491791 F6UZH7 168 aa8.67□□□□□ -1.02
USP4-214ENST00000491791 M0R1W7 72 aa8.67□□□□□ -1.02
USP4-214ENST00000491791 TGOLN2O43493 480 aa8.67□□□□□ -1.02
USP4-214ENST00000491791 PDE6DO43924 150 aa8.67□□□□□ -1.02
USP4-214ENST00000491791 OR2C1O95371 312 aa8.67□□□□□ -1.02
USP4-214ENST00000491791 CXorf1O96002 111 aa8.67□□□□□ -1.02
USP4-214ENST00000491791 RAB5BP61020 215 aa8.67□□□□□ -1.02
USP4-214ENST00000491791 RHOBP62745 196 aa8.67□□□□□ -1.02
USP4-214ENST00000491791 CD69Q07108 199 aa8.67□□□□□ -1.02
USP4-214ENST00000491791 HABP2Q14520 560 aaPredicted RBP8.67□□□□□ -1.02
USP4-214ENST00000491791 MRPL41Q8IXM3 137 aaKnown RBP8.67□□□□□ -1.02
USP4-214ENST00000491791 OR11H6Q8NGC7 330 aa8.67□□□□□ -1.02
USP4-214ENST00000491791 OR8B3Q8NGG8 313 aa8.67□□□□□ -1.02
USP4-214ENST00000491791 NANPQ8TBE9 248 aa8.67□□□□□ -1.02
USP4-214ENST00000491791 OR8B2Q96RD0 313 aa8.67□□□□□ -1.02
USP4-214ENST00000491791 C20orf24Q9BUV8 137 aa8.67□□□□□ -1.02
USP4-214ENST00000491791 BIN3Q9NQY0 253 aa8.67□□□□□ -1.02
USP4-214ENST00000491791 DOK5Q9P104 306 aa8.67□□□□□ -1.02
USP4-214ENST00000491791 ZNRD1Q9P1U0 126 aa8.67□□□□□ -1.02
USP4-214ENST00000491791 AMMECR1Q9Y4X0 333 aaPredicted RBP8.67□□□□□ -1.02
USP4-214ENST00000491791 DOCK11Q5JSL3 2073 aa8.66□□□□□ -1.02
USP4-214ENST00000491791 A0A1W2PPV4 95 aa8.66□□□□□ -1.02
USP4-214ENST00000491791 CGB1A6NKQ9 187 aa8.66□□□□□ -1.02
USP4-214ENST00000491791 ZNF727A8MUV8 499 aa8.66□□□□□ -1.02
USP4-214ENST00000491791 C1orf196B1AJZ1 125 aa8.66□□□□□ -1.02
USP4-214ENST00000491791 BUB1B-PAK6H3BSN5 160 aa8.66□□□□□ -1.02
USP4-214ENST00000491791 CLN5O75503 358 aa8.66□□□□□ -1.02
USP4-214ENST00000491791 TSPAN9O75954 239 aa8.66□□□□□ -1.02
USP4-214ENST00000491791 GOSR1O95249 250 aa8.66□□□□□ -1.02
USP4-214ENST00000491791 CRYGCP07315 174 aa8.66□□□□□ -1.02
USP4-214ENST00000491791 COMPP49747 757 aaPredicted RBP8.66□□□□□ -1.02
USP4-214ENST00000491791 SUB1P53999 127 aaKnown RBP eCLIP8.66□□□□□ -1.02
USP4-214ENST00000491791 B2MP61769 119 aa8.66□□□□□ -1.02
USP4-214ENST00000491791 RPS16P62249 146 aaKnown RBP8.66□□□□□ -1.02
USP4-214ENST00000491791 TMEM241Q24JQ0 296 aa8.66□□□□□ -1.02
USP4-214ENST00000491791 MIC13Q5XKP0 118 aa8.66□□□□□ -1.02
USP4-214ENST00000491791 SPNS3Q6ZMD2 512 aa8.66□□□□□ -1.02
USP4-214ENST00000491791 TIMD4Q96H15 378 aa8.66□□□□□ -1.02
USP4-214ENST00000491791 RNF2Q99496 336 aa8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms