RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 K7EIM0 57 aa13.73□□□□□ -0.21
COL9A3-214ENST00000490398 UCP1P25874 307 aa13.73□□□□□ -0.21
COL9A3-214ENST00000490398 UNQ9165/PRO28630Q6UXU0 137 aa13.73□□□□□ -0.21
COL9A3-214ENST00000490398 Q6ZRM9 215 aa13.73□□□□□ -0.21
COL9A3-214ENST00000490398 GPHB5Q86YW7 130 aa13.73□□□□□ -0.21
COL9A3-214ENST00000490398 CXorf58Q96LI9 332 aa13.73□□□□□ -0.21
COL9A3-214ENST00000490398 THAP7Q9BT49 309 aaPredicted RBP13.73□□□□□ -0.21
COL9A3-214ENST00000490398 PRR13Q9NZ81 148 aa13.73□□□□□ -0.21
COL9A3-214ENST00000490398 RABL2AQ9UBK7 228 aaPredicted RBP13.73□□□□□ -0.21
COL9A3-214ENST00000490398 RABL2BQ9UNT1 228 aa13.73□□□□□ -0.21
COL9A3-214ENST00000490398 RYR3Q15413 4870 aa13.73□□□□□ -0.21
COL9A3-214ENST00000490398 TRBV7-1A0A0A6YYK4 115 aa13.72□□□□□ -0.21
COL9A3-214ENST00000490398 OR5AC1P0C628 307 aa13.72□□□□□ -0.21
COL9A3-214ENST00000490398 HSPE1P61604 102 aaKnown RBP13.72□□□□□ -0.21
COL9A3-214ENST00000490398 PRCDQ00LT1 54 aa13.72□□□□□ -0.21
COL9A3-214ENST00000490398 DCTN2Q13561 401 aaKnown RBP13.72□□□□□ -0.21
COL9A3-214ENST00000490398 ZNF79Q15937 498 aa13.72□□□□□ -0.21
COL9A3-214ENST00000490398 TRIM16LQ309B1 348 aa13.72□□□□□ -0.21
COL9A3-214ENST00000490398 HSD17B13Q7Z5P4 300 aaPredicted RBP13.72□□□□□ -0.21
COL9A3-214ENST00000490398 CCDC190Q86UF4 302 aa13.72□□□□□ -0.21
COL9A3-214ENST00000490398 OR2C3Q8N628 320 aa13.72□□□□□ -0.21
COL9A3-214ENST00000490398 CCDC71LQ8N9Z2 235 aa13.72□□□□□ -0.21
COL9A3-214ENST00000490398 TRIM63Q969Q1 353 aa13.72□□□□□ -0.21
COL9A3-214ENST00000490398 TMEM230Q96A57 120 aa13.72□□□□□ -0.21
COL9A3-214ENST00000490398 ZNF414Q96IQ9 312 aa13.72□□□□□ -0.21
COL9A3-214ENST00000490398 NAA60Q9H7X0 242 aa13.72□□□□□ -0.21
COL9A3-214ENST00000490398 FKBP11Q9NYL4 201 aa13.72□□□□□ -0.21
COL9A3-214ENST00000490398 PEMTQ9UBM1 199 aa13.72□□□□□ -0.21
COL9A3-214ENST00000490398 TMEM213A2RRL7 107 aa13.71□□□□□ -0.21
COL9A3-214ENST00000490398 FOLR2P14207 255 aa13.71□□□□□ -0.21
COL9A3-214ENST00000490398 KLF9Q13886 244 aaPredicted RBP13.71□□□□□ -0.21
COL9A3-214ENST00000490398 CD300EQ496F6 205 aaPredicted RBP13.71□□□□□ -0.21
COL9A3-214ENST00000490398 FAM209BQ5JX69 171 aa13.71□□□□□ -0.21
COL9A3-214ENST00000490398 SBSPONQ8IVN8 264 aa13.71□□□□□ -0.21
COL9A3-214ENST00000490398 VN1R17PQ8TDU5 208 aa13.71□□□□□ -0.21
COL9A3-214ENST00000490398 SCARB1Q8WTV0 552 aa13.71□□□□□ -0.21
COL9A3-214ENST00000490398 GLYATL2Q8WU03 294 aa13.71□□□□□ -0.21
COL9A3-214ENST00000490398 TMEM56Q96MV1 263 aa13.71□□□□□ -0.21
COL9A3-214ENST00000490398 SLC2A8Q9NY64 477 aa13.71□□□□□ -0.21
COL9A3-214ENST00000490398 C14orf166Q9Y224 244 aaKnown RBP13.71□□□□□ -0.21
COL9A3-214ENST00000490398 TEX13DA0A0J9YY54 714 aaPredicted RBP13.7□□□□□ -0.22
COL9A3-214ENST00000490398 ZNF320A2RRD8 509 aa13.7□□□□□ -0.22
COL9A3-214ENST00000490398 OR2T8A6NH00 312 aa13.7□□□□□ -0.22
COL9A3-214ENST00000490398 CRYM-AS1A6NIL9 109 aa13.7□□□□□ -0.22
COL9A3-214ENST00000490398 LGALS9O00182 355 aa13.7□□□□□ -0.22
COL9A3-214ENST00000490398 ST8SIA3O43173 380 aa13.7□□□□□ -0.22
COL9A3-214ENST00000490398 FRMD6-AS1P0C7T7 363 aa13.7□□□□□ -0.22
COL9A3-214ENST00000490398 AKR1C2P52895 323 aa13.7□□□□□ -0.22
COL9A3-214ENST00000490398 SURF2Q15527 256 aaPredicted RBP13.7□□□□□ -0.22
COL9A3-214ENST00000490398 DEFB114Q30KQ6 69 aa13.7□□□□□ -0.22
COL9A3-214ENST00000490398 TM4SF20Q53R12 229 aa13.7□□□□□ -0.22
COL9A3-214ENST00000490398 PYDC2Q56P42 97 aa13.7□□□□□ -0.22
COL9A3-214ENST00000490398 SELENOHQ8IZQ5 122 aaKnown RBP13.7□□□□□ -0.22
COL9A3-214ENST00000490398 PRRT1Q99946 306 aa13.7□□□□□ -0.22
COL9A3-214ENST00000490398 CHRDL1Q9BU40 450 aa13.7□□□□□ -0.22
COL9A3-214ENST00000490398 TMEM222Q9H0R3 208 aa13.7□□□□□ -0.22
COL9A3-214ENST00000490398 MCUBQ9NWR8 336 aa13.7□□□□□ -0.22
COL9A3-214ENST00000490398 THYN1Q9P016 225 aa13.7□□□□□ -0.22
COL9A3-214ENST00000490398 SACSQ9NZJ4 4579 aa13.69□□□□□ -0.22
COL9A3-214ENST00000490398 ZNF785A8K8V0 405 aa13.69□□□□□ -0.22
COL9A3-214ENST00000490398 TGOLN2O43493 480 aa13.69□□□□□ -0.22
COL9A3-214ENST00000490398 CDS2O95674 445 aa13.69□□□□□ -0.22
COL9A3-214ENST00000490398 IGHV3-48P01763 117 aa13.69□□□□□ -0.22
COL9A3-214ENST00000490398 ADMP35318 185 aa13.69□□□□□ -0.22
COL9A3-214ENST00000490398 OR1P1Q8NH06 330 aa13.69□□□□□ -0.22
COL9A3-214ENST00000490398 STARD9Q9P2P6 4700 aa13.68□□□□□ -0.22
COL9A3-214ENST00000490398 I3L2K1 104 aa13.68□□□□□ -0.22
COL9A3-214ENST00000490398 ZNF701M0R085 212 aaPredicted RBP13.68□□□□□ -0.22
COL9A3-214ENST00000490398 IGHV4-30-4P0DP06 118 aa13.68□□□□□ -0.22
COL9A3-214ENST00000490398 CBLN1P23435 193 aa13.68□□□□□ -0.22
COL9A3-214ENST00000490398 ETV6P41212 452 aa13.68□□□□□ -0.22
COL9A3-214ENST00000490398 PLET1Q6UQ28 207 aa13.68□□□□□ -0.22
COL9A3-214ENST00000490398 Q8N402 240 aa13.68□□□□□ -0.22
COL9A3-214ENST00000490398 PLEKHA3Q9HB20 300 aa13.68□□□□□ -0.22
COL9A3-214ENST00000490398 C21orf62Q9NYP8 219 aa13.68□□□□□ -0.22
COL9A3-214ENST00000490398 MLXQ9UH92 298 aa13.68□□□□□ -0.22
COL9A3-214ENST00000490398 IGHV3OR16-8A0A075B7F1 116 aa13.67□□□□□ -0.22
COL9A3-214ENST00000490398 A8MWP6 167 aa13.67□□□□□ -0.22
COL9A3-214ENST00000490398 FAM106AQ4KMX7 169 aa13.67□□□□□ -0.22
COL9A3-214ENST00000490398 UBAC2Q8NBM4 344 aa13.67□□□□□ -0.22
COL9A3-214ENST00000490398 ZNF114Q8NC26 417 aa13.67□□□□□ -0.22
COL9A3-214ENST00000490398 GPR146Q96CH1 333 aa13.67□□□□□ -0.22
COL9A3-214ENST00000490398 MISP3Q96FF7 219 aa13.67□□□□□ -0.22
COL9A3-214ENST00000490398 WDR89Q96FK6 387 aaPredicted RBP13.67□□□□□ -0.22
COL9A3-214ENST00000490398 ZNF436Q9C0F3 470 aaPredicted RBP13.67□□□□□ -0.22
COL9A3-214ENST00000490398 STAB2Q8WWQ8 2551 aa13.67□□□□□ -0.22
COL9A3-214ENST00000490398 TENM3Q9P273 2699 aa13.67□□□□□ -0.22
COL9A3-214ENST00000490398 MT-CO2P00403 227 aa13.66□□□□□ -0.22
COL9A3-214ENST00000490398 IFNA17P01571 189 aa13.66□□□□□ -0.22
COL9A3-214ENST00000490398 S100A5P33763 92 aa13.66□□□□□ -0.22
COL9A3-214ENST00000490398 SUPT4H1P63272 117 aaKnown RBP13.66□□□□□ -0.22
COL9A3-214ENST00000490398 TMEM187Q14656 261 aa13.66□□□□□ -0.22
COL9A3-214ENST00000490398 TMEM268Q5VZI3 342 aa13.66□□□□□ -0.22
COL9A3-214ENST00000490398 LCN12Q6JVE5 192 aa13.66□□□□□ -0.22
COL9A3-214ENST00000490398 UXS1Q8NBZ7 420 aa13.66□□□□□ -0.22
COL9A3-214ENST00000490398 DYNLRB2Q8TF09 96 aa13.66□□□□□ -0.22
COL9A3-214ENST00000490398 RRNAD1Q96FB5 475 aaKnown RBP13.66□□□□□ -0.22
COL9A3-214ENST00000490398 C19orf73Q9NVV2 129 aa13.66□□□□□ -0.22
COL9A3-214ENST00000490398 SCP2D1Q9UJQ7 156 aa13.66□□□□□ -0.22
COL9A3-214ENST00000490398 CYB5BO43169 146 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms