RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 MOB4Q9Y3A3 225 aa17.2■□□□□ 0.34
SMC4-221ENST00000489573 TEX22C9J3V5 150 aa17.19■□□□□ 0.34
SMC4-221ENST00000489573 HLA-DRB1P01911 266 aa17.19■□□□□ 0.34
SMC4-221ENST00000489573 IFNA4P05014 189 aa17.19■□□□□ 0.34
SMC4-221ENST00000489573 ATP6V1FQ16864 119 aa17.19■□□□□ 0.34
SMC4-221ENST00000489573 ZNF562Q6V9R5 426 aa17.19■□□□□ 0.34
SMC4-221ENST00000489573 TMEM219Q86XT9 240 aa17.19■□□□□ 0.34
SMC4-221ENST00000489573 ARV1Q9H2C2 271 aa17.19■□□□□ 0.34
SMC4-221ENST00000489573 ABCA1O95477 2261 aa17.19■□□□□ 0.34
SMC4-221ENST00000489573 CCDC168Q8NDH2 2452 aa17.19■□□□□ 0.34
SMC4-221ENST00000489573 CX3CL1P78423 397 aa17.19■□□□□ 0.34
SMC4-221ENST00000489573 C22orf15Q8WYQ4 148 aa17.19■□□□□ 0.34
SMC4-221ENST00000489573 TMEM147Q9BVK8 224 aa17.19■□□□□ 0.34
SMC4-221ENST00000489573 A6NDX4 124 aa17.18■□□□□ 0.34
SMC4-221ENST00000489573 PRSS46E5RG02 174 aa17.18■□□□□ 0.34
SMC4-221ENST00000489573 IFNA5P01569 189 aa17.18■□□□□ 0.34
SMC4-221ENST00000489573 AREGP15514 252 aa17.18■□□□□ 0.34
SMC4-221ENST00000489573 SUB1P53999 127 aaKnown RBP eCLIP17.18■□□□□ 0.34
SMC4-221ENST00000489573 TUSC1Q2TAM9 212 aa17.18■□□□□ 0.34
SMC4-221ENST00000489573 C5orf56Q8N8D9 126 aa17.18■□□□□ 0.34
SMC4-221ENST00000489573 ABHD5Q8WTS1 349 aa17.18■□□□□ 0.34
SMC4-221ENST00000489573 SCARB1Q8WTV0 552 aa17.18■□□□□ 0.34
SMC4-221ENST00000489573 SSMEM1Q8WWF3 244 aa17.18■□□□□ 0.34
SMC4-221ENST00000489573 ARPC1AQ92747 370 aa17.18■□□□□ 0.34
SMC4-221ENST00000489573 PITPNC1Q9UKF7 332 aa17.18■□□□□ 0.34
SMC4-221ENST00000489573 OTOGQ6ZRI0 2925 aa17.17■□□□□ 0.34
SMC4-221ENST00000489573 FGF16O43320 207 aa17.17■□□□□ 0.34
SMC4-221ENST00000489573 LY6EQ16553 131 aa17.17■□□□□ 0.34
SMC4-221ENST00000489573 P2RX4Q99571 388 aa17.17■□□□□ 0.34
SMC4-221ENST00000489573 GINS3Q9BRX5 216 aa17.17■□□□□ 0.34
SMC4-221ENST00000489573 UQCC1Q9NVA1 299 aa17.17■□□□□ 0.34
SMC4-221ENST00000489573 ITPR3Q14573 2671 aa17.16■□□□□ 0.34
SMC4-221ENST00000489573 IGHV7-81A0A0B4J1V7 117 aa17.16■□□□□ 0.34
SMC4-221ENST00000489573 REG1AP05451 166 aa17.16■□□□□ 0.34
SMC4-221ENST00000489573 DLK1P80370 383 aa17.16■□□□□ 0.34
SMC4-221ENST00000489573 VWC2Q2TAL6 325 aa17.16■□□□□ 0.34
SMC4-221ENST00000489573 EIF5AL1Q6IS14 154 aaKnown RBP17.16■□□□□ 0.34
SMC4-221ENST00000489573 SLC25A24Q6NUK1 477 aa17.16■□□□□ 0.34
SMC4-221ENST00000489573 HSD17B11Q8NBQ5 300 aa17.16■□□□□ 0.34
SMC4-221ENST00000489573 ZNF114Q8NC26 417 aa17.16■□□□□ 0.34
SMC4-221ENST00000489573 GGACTQ9BVM4 153 aa17.16■□□□□ 0.34
SMC4-221ENST00000489573 AKAP9Q99996 3911 aa17.16■□□□□ 0.34
SMC4-221ENST00000489573 APELAP0DMC3 54 aa17.15■□□□□ 0.34
SMC4-221ENST00000489573 NDPQ00604 133 aa17.15■□□□□ 0.34
SMC4-221ENST00000489573 TMED6Q8WW62 240 aa17.15■□□□□ 0.34
SMC4-221ENST00000489573 PARD6GQ9BYG4 376 aaPredicted RBP17.15■□□□□ 0.34
SMC4-221ENST00000489573 UBE2L5PA0A1B0GUS4 154 aa17.15■□□□□ 0.34
SMC4-221ENST00000489573 SPNS3Q6ZMD2 512 aa17.15■□□□□ 0.34
SMC4-221ENST00000489573 SCGB1C1Q8TD33 95 aa17.15■□□□□ 0.34
SMC4-221ENST00000489573 FAM103A1Q9BTL3 118 aaKnown RBP17.15■□□□□ 0.34
SMC4-221ENST00000489573 YAE1D1Q9NRH1 226 aa17.15■□□□□ 0.34
SMC4-221ENST00000489573 FBXO24O75426 580 aa17.14■□□□□ 0.33
SMC4-221ENST00000489573 C16orf82Q7Z2V1 217 aa17.14■□□□□ 0.33
SMC4-221ENST00000489573 HSPB9Q9BQS6 159 aa17.14■□□□□ 0.33
SMC4-221ENST00000489573 WDR61Q9GZS3 305 aaKnown RBP17.14■□□□□ 0.33
SMC4-221ENST00000489573 PLXNB1O43157 2135 aa17.13■□□□□ 0.33
SMC4-221ENST00000489573 IGHV4-59P01825 116 aa17.13■□□□□ 0.33
SMC4-221ENST00000489573 ATP6V0CP27449 155 aa17.13■□□□□ 0.33
SMC4-221ENST00000489573 IER3P46695 156 aa17.13■□□□□ 0.33
SMC4-221ENST00000489573 FAM74A1Q5RGS3 127 aa17.13■□□□□ 0.33
SMC4-221ENST00000489573 IL17RELQ6ZVW7 336 aa17.13■□□□□ 0.33
SMC4-221ENST00000489573 OR1P1Q8NH06 330 aa17.13■□□□□ 0.33
SMC4-221ENST00000489573 OR5R1Q8NH85 324 aa17.13■□□□□ 0.33
SMC4-221ENST00000489573 RNASEH2CQ8TDP1 164 aaKnown RBP17.13■□□□□ 0.33
SMC4-221ENST00000489573 GNPNAT1Q96EK6 184 aaPredicted RBP17.13■□□□□ 0.33
SMC4-221ENST00000489573 F11RQ9Y624 299 aaKnown RBP17.13■□□□□ 0.33
SMC4-221ENST00000489573 MAP1AP78559 2803 aaPredicted RBP17.13■□□□□ 0.33
SMC4-221ENST00000489573 M0QZK8 103 aa17.12■□□□□ 0.33
SMC4-221ENST00000489573 SEC11BP0C7V7 166 aa17.12■□□□□ 0.33
SMC4-221ENST00000489573 SPP1P10451 314 aa17.12■□□□□ 0.33
SMC4-221ENST00000489573 PVRIGQ6DKI7 326 aa17.12■□□□□ 0.33
SMC4-221ENST00000489573 Q6YL49 198 aa17.12■□□□□ 0.33
SMC4-221ENST00000489573 ZNF48Q96MX3 618 aaPredicted RBP17.12■□□□□ 0.33
SMC4-221ENST00000489573 SH3BGRL3Q9H299 93 aa17.12■□□□□ 0.33
SMC4-221ENST00000489573 SLC25A32Q9H2D1 315 aa17.12■□□□□ 0.33
SMC4-221ENST00000489573 SMCO3A2RU48 225 aa17.11■□□□□ 0.33
SMC4-221ENST00000489573 BTBD17A6NE02 478 aa17.11■□□□□ 0.33
SMC4-221ENST00000489573 AMY1AP04745 511 aa17.11■□□□□ 0.33
SMC4-221ENST00000489573 SRP14P37108 136 aaKnown RBP17.11■□□□□ 0.33
SMC4-221ENST00000489573 RUNX1Q01196 453 aa17.11■□□□□ 0.33
SMC4-221ENST00000489573 TAF15Q92804 592 aaKnown RBP eCLIP17.11■□□□□ 0.337e-26■■■■□ 25.9
SMC4-221ENST00000489573 PRDM13Q9H4Q3 707 aa17.11■□□□□ 0.33
SMC4-221ENST00000489573 FBXO7Q9Y3I1 522 aa17.11■□□□□ 0.33
SMC4-221ENST00000489573 SH2D7A6NKC9 451 aaPredicted RBP17.11■□□□□ 0.33
SMC4-221ENST00000489573 FNDC10F2Z333 226 aa17.11■□□□□ 0.33
SMC4-221ENST00000489573 CTRB1P17538 263 aa17.11■□□□□ 0.33
SMC4-221ENST00000489573 FGF7P21781 194 aa17.11■□□□□ 0.33
SMC4-221ENST00000489573 CD69Q07108 199 aa17.11■□□□□ 0.33
SMC4-221ENST00000489573 ARSJQ5FYB0 599 aaPredicted RBP17.11■□□□□ 0.33
SMC4-221ENST00000489573 CTRB2Q6GPI1 263 aa17.11■□□□□ 0.33
SMC4-221ENST00000489573 PARP11Q9NR21 331 aa17.11■□□□□ 0.33
SMC4-221ENST00000489573 CSPG4Q6UVK1 2322 aa17.1■□□□□ 0.33
SMC4-221ENST00000489573 NPIPB5A8MRT5 1133 aa17.1■□□□□ 0.33
SMC4-221ENST00000489573 EGR2P11161 476 aaPredicted RBP17.1■□□□□ 0.33
SMC4-221ENST00000489573 MFAP2P55001 183 aa17.1■□□□□ 0.33
SMC4-221ENST00000489573 RAB14P61106 215 aa17.1■□□□□ 0.33
SMC4-221ENST00000489573 ASPHD1Q5U4P2 390 aa17.1■□□□□ 0.33
SMC4-221ENST00000489573 C19orf35Q6ZS72 473 aa17.1■□□□□ 0.33
SMC4-221ENST00000489573 SGMS2Q8NHU3 365 aa17.1■□□□□ 0.33
SMC4-221ENST00000489573 WDR83OSQ9Y284 106 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms