RNA–Protein interactions for RNA: ENST00000488321.1

TRIM54-204, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 560 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-204ENST00000488321 C5orf66Q9H5L9 145 aa11.42□□□□□ -0.58
TRIM54-204ENST00000488321 NAA60Q9H7X0 242 aa11.42□□□□□ -0.58
TRIM54-204ENST00000488321 IGHV3-21A0A0B4J1V1 117 aa11.41□□□□□ -0.58
TRIM54-204ENST00000488321 ZNF320A2RRD8 509 aa11.41□□□□□ -0.58
TRIM54-204ENST00000488321 UCP1P25874 307 aa11.41□□□□□ -0.58
TRIM54-204ENST00000488321 FAUP35544 74 aaKnown RBP11.41□□□□□ -0.58
TRIM54-204ENST00000488321 HSPE1P61604 102 aaKnown RBP11.41□□□□□ -0.58
TRIM54-204ENST00000488321 PRCDQ00LT1 54 aa11.41□□□□□ -0.58
TRIM54-204ENST00000488321 SPINK9Q5DT21 86 aa11.41□□□□□ -0.58
TRIM54-204ENST00000488321 TOMM5Q8N4H5 51 aa11.41□□□□□ -0.58
TRIM54-204ENST00000488321 OR1L6Q8NGR2 347 aa11.41□□□□□ -0.58
TRIM54-204ENST00000488321 ZNF502Q8TBZ5 544 aa11.41□□□□□ -0.58
TRIM54-204ENST00000488321 PDCD10Q9BUL8 212 aa11.41□□□□□ -0.58
TRIM54-204ENST00000488321 TMEM222Q9H0R3 208 aa11.41□□□□□ -0.58
TRIM54-204ENST00000488321 PLEKHA3Q9HB20 300 aa11.41□□□□□ -0.58
TRIM54-204ENST00000488321 SLC2A8Q9NY64 477 aa11.41□□□□□ -0.58
TRIM54-204ENST00000488321 GPR132Q9UNW8 380 aa11.41□□□□□ -0.58
TRIM54-204ENST00000488321 SMAD5-AS1Q9Y6J3 95 aa11.41□□□□□ -0.58
TRIM54-204ENST00000488321 IFNA17P01571 189 aa11.4□□□□□ -0.58
TRIM54-204ENST00000488321 MFAP2P55001 183 aa11.4□□□□□ -0.58
TRIM54-204ENST00000488321 AP3S2P59780 193 aa11.4□□□□□ -0.58
TRIM54-204ENST00000488321 FAM106AQ4KMX7 169 aa11.4□□□□□ -0.58
TRIM54-204ENST00000488321 SPANXN2Q5MJ10 180 aa11.4□□□□□ -0.58
TRIM54-204ENST00000488321 PLET1Q6UQ28 207 aa11.4□□□□□ -0.58
TRIM54-204ENST00000488321 CCDC190Q86UF4 302 aa11.4□□□□□ -0.58
TRIM54-204ENST00000488321 SLC35G3Q8N808 338 aa11.4□□□□□ -0.58
TRIM54-204ENST00000488321 UBAC2Q8NBM4 344 aa11.4□□□□□ -0.58
TRIM54-204ENST00000488321 VN1R17PQ8TDU5 208 aa11.4□□□□□ -0.58
TRIM54-204ENST00000488321 DYNLRB2Q8TF09 96 aa11.4□□□□□ -0.58
TRIM54-204ENST00000488321 SCGB3A2Q96PL1 93 aa11.4□□□□□ -0.58
TRIM54-204ENST00000488321 TNCP24821 2201 aa11.39□□□□□ -0.59
TRIM54-204ENST00000488321 A0A0B4J293 547 aa11.39□□□□□ -0.59
TRIM54-204ENST00000488321 IGHV3-35A0A0C4DH35 117 aa11.39□□□□□ -0.59
TRIM54-204ENST00000488321 CRYM-AS1A6NIL9 109 aa11.39□□□□□ -0.59
TRIM54-204ENST00000488321 ERHP84090 104 aaKnown RBP11.39□□□□□ -0.59
TRIM54-204ENST00000488321 DHODHQ02127 395 aa11.39□□□□□ -0.59
TRIM54-204ENST00000488321 KLF9Q13886 244 aaPredicted RBP11.39□□□□□ -0.59
TRIM54-204ENST00000488321 ZNF79Q15937 498 aa11.39□□□□□ -0.59
TRIM54-204ENST00000488321 LCN12Q6JVE5 192 aa11.39□□□□□ -0.59
TRIM54-204ENST00000488321 GPHB5Q86YW7 130 aa11.39□□□□□ -0.59
TRIM54-204ENST00000488321 SGPP2Q8IWX5 399 aa11.39□□□□□ -0.59
TRIM54-204ENST00000488321 OR2C3Q8N628 320 aa11.39□□□□□ -0.59
TRIM54-204ENST00000488321 OR1P1Q8NH06 330 aa11.39□□□□□ -0.59
TRIM54-204ENST00000488321 TRIM63Q969Q1 353 aa11.39□□□□□ -0.59
TRIM54-204ENST00000488321 MISP3Q96FF7 219 aa11.39□□□□□ -0.59
TRIM54-204ENST00000488321 C21orf62Q9NYP8 219 aa11.39□□□□□ -0.59
TRIM54-204ENST00000488321 SIGLEC8Q9NYZ4 499 aa11.39□□□□□ -0.59
TRIM54-204ENST00000488321 A0A0G2JRQ6 117 aa11.38□□□□□ -0.59
TRIM54-204ENST00000488321 OR2T8A6NH00 312 aa11.38□□□□□ -0.59
TRIM54-204ENST00000488321 C2orf70A6NJV1 201 aa11.38□□□□□ -0.59
TRIM54-204ENST00000488321 LGALS9O00182 355 aa11.38□□□□□ -0.59
TRIM54-204ENST00000488321 ST8SIA3O43173 380 aa11.38□□□□□ -0.59
TRIM54-204ENST00000488321 TGOLN2O43493 480 aa11.38□□□□□ -0.59
TRIM54-204ENST00000488321 CDS2O95674 445 aa11.38□□□□□ -0.59
TRIM54-204ENST00000488321 P0C879 139 aa11.38□□□□□ -0.59
TRIM54-204ENST00000488321 AKR1C4P17516 323 aa11.38□□□□□ -0.59
TRIM54-204ENST00000488321 HOXA1P49639 335 aaPredicted RBP11.38□□□□□ -0.59
TRIM54-204ENST00000488321 Q56UQ5 140 aa11.38□□□□□ -0.59
TRIM54-204ENST00000488321 TMEM268Q5VZI3 342 aa11.38□□□□□ -0.59
TRIM54-204ENST00000488321 SCARB1Q8WTV0 552 aa11.38□□□□□ -0.59
TRIM54-204ENST00000488321 GLYATL2Q8WU03 294 aa11.38□□□□□ -0.59
TRIM54-204ENST00000488321 RBPMSQ93062 196 aaKnown RBP11.38□□□□□ -0.59
TRIM54-204ENST00000488321 ASCL2Q99929 193 aa11.38□□□□□ -0.59
TRIM54-204ENST00000488321 KCNIP3Q9Y2W7 256 aa11.38□□□□□ -0.59
TRIM54-204ENST00000488321 K7EIM0 57 aa11.37□□□□□ -0.59
TRIM54-204ENST00000488321 FOLR2P14207 255 aa11.37□□□□□ -0.59
TRIM54-204ENST00000488321 EDN2P20800 178 aa11.37□□□□□ -0.59
TRIM54-204ENST00000488321 SNCAP37840 140 aa11.37□□□□□ -0.59
TRIM54-204ENST00000488321 ETV6P41212 452 aa11.37□□□□□ -0.59
TRIM54-204ENST00000488321 INPP1P49441 399 aa11.37□□□□□ -0.59
TRIM54-204ENST00000488321 ZNF57Q68EA5 555 aaPredicted RBP11.37□□□□□ -0.59
TRIM54-204ENST00000488321 C11orf87Q6NUJ2 197 aa11.37□□□□□ -0.59
TRIM54-204ENST00000488321 ADAMTSL5Q6ZMM2 481 aa11.37□□□□□ -0.59
TRIM54-204ENST00000488321 FAM219AQ8IW50 185 aa11.37□□□□□ -0.59
TRIM54-204ENST00000488321 SELENOHQ8IZQ5 122 aaKnown RBP11.37□□□□□ -0.59
TRIM54-204ENST00000488321 LHFPL5Q8TAF8 219 aa11.37□□□□□ -0.59
TRIM54-204ENST00000488321 CACNG8Q8WXS5 425 aa11.37□□□□□ -0.59
TRIM54-204ENST00000488321 PINX1Q96BK5 328 aaKnown RBP11.37□□□□□ -0.59
TRIM54-204ENST00000488321 ENY2Q9NPA8 101 aa11.37□□□□□ -0.59
TRIM54-204ENST00000488321 PRR13Q9NZ81 148 aa11.37□□□□□ -0.59
TRIM54-204ENST00000488321 IZUMO1RA6ND01 250 aa11.36□□□□□ -0.59
TRIM54-204ENST00000488321 CD300EQ496F6 205 aaPredicted RBP11.36□□□□□ -0.59
TRIM54-204ENST00000488321 UNQ9165/PRO28630Q6UXU0 137 aa11.36□□□□□ -0.59
TRIM54-204ENST00000488321 TMED4Q7Z7H5 227 aa11.36□□□□□ -0.59
TRIM54-204ENST00000488321 GTSCR1Q86UQ5 136 aa11.36□□□□□ -0.59
TRIM54-204ENST00000488321 ZNF114Q8NC26 417 aa11.36□□□□□ -0.59
TRIM54-204ENST00000488321 TMEM230Q96A57 120 aa11.36□□□□□ -0.59
TRIM54-204ENST00000488321 BSCL2Q96G97 398 aaPredicted RBP11.36□□□□□ -0.59
TRIM54-204ENST00000488321 PALMDQ9NP74 551 aa11.36□□□□□ -0.59
TRIM54-204ENST00000488321 NDUFA13Q9P0J0 144 aa11.36□□□□□ -0.59
TRIM54-204ENST00000488321 SELENOKQ9Y6D0 94 aa11.36□□□□□ -0.59
TRIM54-204ENST00000488321 TMEM213A2RRL7 107 aa11.35□□□□□ -0.59
TRIM54-204ENST00000488321 MT-CO2P00403 227 aa11.35□□□□□ -0.59
TRIM54-204ENST00000488321 IGHV3-48P01763 117 aa11.35□□□□□ -0.59
TRIM54-204ENST00000488321 ANXA3P12429 323 aa11.35□□□□□ -0.59
TRIM54-204ENST00000488321 CBLN1P23435 193 aa11.35□□□□□ -0.59
TRIM54-204ENST00000488321 TM4SF20Q53R12 229 aa11.35□□□□□ -0.59
TRIM54-204ENST00000488321 TRIQKQ629K1 86 aa11.35□□□□□ -0.59
TRIM54-204ENST00000488321 Q6ZRM9 215 aa11.35□□□□□ -0.59
TRIM54-204ENST00000488321 OR2K2Q8NGT1 345 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms