RNA–Protein interactions for RNA: ENST00000487880.2

USP48-209, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 524 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-209ENST00000487880 MT-ND4LP03901 98 aa2.02□□□□□ -2.09
USP48-209ENST00000487880 TCRBP04435 133 aa2.02□□□□□ -2.09
USP48-209ENST00000487880 CRYBA1P05813 215 aa2.02□□□□□ -2.09
USP48-209ENST00000487880 CRHP06850 196 aa2.02□□□□□ -2.09
USP48-209ENST00000487880 GP1BAP07359 652 aa2.02□□□□□ -2.09
USP48-209ENST00000487880 COX5BP10606 129 aa2.02□□□□□ -2.09
USP48-209ENST00000487880 HIST1H1BP16401 226 aaKnown RBP2.02□□□□□ -2.09
USP48-209ENST00000487880 OGNP20774 298 aaKnown RBP2.02□□□□□ -2.09
USP48-209ENST00000487880 CCR7P32248 378 aa2.02□□□□□ -2.09
USP48-209ENST00000487880 CRATP43155 626 aa2.02□□□□□ -2.09
USP48-209ENST00000487880 SRP9P49458 86 aaKnown RBP2.02□□□□□ -2.09
USP48-209ENST00000487880 TTPAP49638 278 aa2.02□□□□□ -2.09
USP48-209ENST00000487880 ARPP19P56211 112 aa2.02□□□□□ -2.09
USP48-209ENST00000487880 PKIAP61925 76 aa2.02□□□□□ -2.09
USP48-209ENST00000487880 MRPS10P82664 201 aaKnown RBP2.02□□□□□ -2.09
USP48-209ENST00000487880 HOXC5Q00444 222 aa2.02□□□□□ -2.09
USP48-209ENST00000487880 DEFA5Q01523 94 aa2.02□□□□□ -2.09
USP48-209ENST00000487880 C2orf80Q0P641 193 aa2.02□□□□□ -2.09
USP48-209ENST00000487880 OR2F1Q13607 317 aa2.02□□□□□ -2.09
USP48-209ENST00000487880 ZNF345Q14585 488 aa2.02□□□□□ -2.09
USP48-209ENST00000487880 TRAM1Q15629 374 aa2.02□□□□□ -2.09
USP48-209ENST00000487880 RNASE10Q5GAN6 216 aaKnown RBP2.02□□□□□ -2.09
USP48-209ENST00000487880 PTRHD1Q6GMV3 140 aaKnown RBP2.02□□□□□ -2.09
USP48-209ENST00000487880 EIF5AL1Q6IS14 154 aaKnown RBP2.02□□□□□ -2.09
USP48-209ENST00000487880 DRAM2Q6UX65 266 aa2.02□□□□□ -2.09
USP48-209ENST00000487880 HS3ST5Q8IZT8 346 aa2.02□□□□□ -2.09
USP48-209ENST00000487880 ATP6V1C2Q8NEY4 427 aa2.02□□□□□ -2.09
USP48-209ENST00000487880 OR10D4PQ8NGN7 298 aa2.02□□□□□ -2.09
USP48-209ENST00000487880 OR2T35Q8NGX2 323 aa2.02□□□□□ -2.09
USP48-209ENST00000487880 OR5J2Q8NH18 312 aa2.02□□□□□ -2.09
USP48-209ENST00000487880 OR4K15Q8NH41 348 aa2.02□□□□□ -2.09
USP48-209ENST00000487880 JOSD2Q8TAC2 188 aa2.02□□□□□ -2.09
USP48-209ENST00000487880 GNPDA2Q8TDQ7 276 aa2.02□□□□□ -2.09
USP48-209ENST00000487880 TMEM203Q969S6 136 aa2.02□□□□□ -2.09
USP48-209ENST00000487880 C14orf144Q96I85 54 aa2.02□□□□□ -2.09
USP48-209ENST00000487880 LINC01587Q99440 93 aa2.02□□□□□ -2.09
USP48-209ENST00000487880 B9D2Q9BPU9 175 aa2.02□□□□□ -2.09
USP48-209ENST00000487880 PRRG3Q9BZD7 231 aa2.02□□□□□ -2.09
USP48-209ENST00000487880 SMCO4Q9NRQ5 59 aa2.02□□□□□ -2.09
USP48-209ENST00000487880 TXNL4BQ9NX01 149 aaKnown RBP2.02□□□□□ -2.09
USP48-209ENST00000487880 C1orf109Q9NX04 203 aa2.02□□□□□ -2.09
USP48-209ENST00000487880 PCYT1BQ9Y5K3 369 aaPredicted RBP2.02□□□□□ -2.09
USP48-209ENST00000487880 MTCH2Q9Y6C9 303 aa2.02□□□□□ -2.09
USP48-209ENST00000487880 SBF2Q86WG5 1849 aa2.02□□□□□ -2.09
USP48-209ENST00000487880 QSER1Q2KHR3 1735 aa2.02□□□□□ -2.09
USP48-209ENST00000487880 MYO9BQ13459 2157 aa2.02□□□□□ -2.09
USP48-209ENST00000487880 SSC5DA1L4H1 1573 aa2.02□□□□□ -2.09
USP48-209ENST00000487880 DICER1Q9UPY3 1922 aaKnown RBP2.01□□□□□ -2.09
USP48-209ENST00000487880 FOCADQ5VW36 1801 aa2.01□□□□□ -2.09
USP48-209ENST00000487880 ICE1Q9Y2F5 2266 aa2.01□□□□□ -2.09
USP48-209ENST00000487880 TRAV8-3A0A0A6YYJ7 113 aa2.01□□□□□ -2.09
USP48-209ENST00000487880 SMLR1H3BR10 107 aa2.01□□□□□ -2.09
USP48-209ENST00000487880 J3QKU1 62 aa2.01□□□□□ -2.09
USP48-209ENST00000487880 UBFD1O14562 309 aaKnown RBP2.01□□□□□ -2.09
USP48-209ENST00000487880 SLC16A4O15374 487 aa2.01□□□□□ -2.09
USP48-209ENST00000487880 TGOLN2O43493 480 aa2.01□□□□□ -2.09
USP48-209ENST00000487880 GGCTO75223 188 aaKnown RBP2.01□□□□□ -2.09
USP48-209ENST00000487880 RPP14O95059 124 aaKnown RBP2.01□□□□□ -2.09
USP48-209ENST00000487880 UBL3O95164 117 aa2.01□□□□□ -2.09
USP48-209ENST00000487880 SOD1P00441 154 aa2.01□□□□□ -2.09
USP48-209ENST00000487880 CA2P00918 260 aa2.01□□□□□ -2.09
USP48-209ENST00000487880 OR4E1P0C645 316 aa2.01□□□□□ -2.09
USP48-209ENST00000487880 METTL15P1P0C7V9 234 aa2.01□□□□□ -2.09
USP48-209ENST00000487880 ZNF22P17026 224 aaPredicted RBP2.01□□□□□ -2.09
USP48-209ENST00000487880 CXCL2P19875 107 aa2.01□□□□□ -2.09
USP48-209ENST00000487880 PPIBP23284 216 aaKnown RBP2.01□□□□□ -2.09
USP48-209ENST00000487880 CDKN2CP42773 168 aa2.01□□□□□ -2.09
USP48-209ENST00000487880 KCNJ3P48549 501 aa2.01□□□□□ -2.09
USP48-209ENST00000487880 DNASE1L1P49184 302 aa2.01□□□□□ -2.09
USP48-209ENST00000487880 CTBP2P56545 445 aa2.01□□□□□ -2.09
USP48-209ENST00000487880 GLO1Q04760 184 aa2.01□□□□□ -2.09
USP48-209ENST00000487880 PEA15Q15121 130 aa2.01□□□□□ -2.09
USP48-209ENST00000487880 GOLGA7BQ2TAP0 167 aa2.01□□□□□ -2.09
USP48-209ENST00000487880 DEFB115Q30KQ5 88 aa2.01□□□□□ -2.09
USP48-209ENST00000487880 TMEM31Q5JXX7 168 aa2.01□□□□□ -2.09
USP48-209ENST00000487880 BCL2L15Q5TBC7 163 aa2.01□□□□□ -2.09
USP48-209ENST00000487880 HIST2H3PS2Q5TEC6 136 aa2.01□□□□□ -2.09
USP48-209ENST00000487880 NCBP2-AS2Q69YL0 99 aa2.01□□□□□ -2.09
USP48-209ENST00000487880 HBMQ6B0K9 141 aa2.01□□□□□ -2.09
USP48-209ENST00000487880 LPCAT3Q6P1A2 487 aa2.01□□□□□ -2.09
USP48-209ENST00000487880 LRRN1Q6UXK5 716 aa2.01□□□□□ -2.09
USP48-209ENST00000487880 HIST2H3AQ71DI3 136 aa2.01□□□□□ -2.09
USP48-209ENST00000487880 NAA40Q86UY6 237 aa2.01□□□□□ -2.09
USP48-209ENST00000487880 GID4Q8IVV7 300 aa2.01□□□□□ -2.09
USP48-209ENST00000487880 ZNF567Q8N184 647 aa2.01□□□□□ -2.09
USP48-209ENST00000487880 TOMM5Q8N4H5 51 aa2.01□□□□□ -2.09
USP48-209ENST00000487880 LINC00471Q8N535 108 aa2.01□□□□□ -2.09
USP48-209ENST00000487880 ZIC4Q8N9L1 334 aa2.01□□□□□ -2.09
USP48-209ENST00000487880 OR13D1Q8NGV5 346 aa2.01□□□□□ -2.09
USP48-209ENST00000487880 STOML3Q8TAV4 291 aa2.01□□□□□ -2.09
USP48-209ENST00000487880 STAG3L4Q8TBR4 150 aa2.01□□□□□ -2.09
USP48-209ENST00000487880 ARL11Q969Q4 196 aa2.01□□□□□ -2.09
USP48-209ENST00000487880 CMBLQ96DG6 245 aa2.01□□□□□ -2.09
USP48-209ENST00000487880 OR8B2Q96RD0 313 aa2.01□□□□□ -2.09
USP48-209ENST00000487880 HBEGFQ99075 208 aa2.01□□□□□ -2.09
USP48-209ENST00000487880 S100A13Q99584 98 aa2.01□□□□□ -2.09
USP48-209ENST00000487880 CMSS1Q9BQ75 279 aaKnown RBP2.01□□□□□ -2.09
USP48-209ENST00000487880 GINS4Q9BRT9 223 aa2.01□□□□□ -2.09
USP48-209ENST00000487880 SNRNP25Q9BV90 132 aaKnown RBP2.01□□□□□ -2.09
USP48-209ENST00000487880 GGACTQ9BVM4 153 aa2.01□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms