RNA–Protein interactions for RNA: ENST00000485792.1

CUX1-208, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-208ENST00000485792 SLC25A42Q86VD7 318 aa4.36□□□□□ -1.71
CUX1-208ENST00000485792 ZNF114Q8NC26 417 aa4.36□□□□□ -1.71
CUX1-208ENST00000485792 OR4C16Q8NGL9 310 aa4.36□□□□□ -1.71
CUX1-208ENST00000485792 OR6Q1Q8NGQ2 317 aa4.36□□□□□ -1.71
CUX1-208ENST00000485792 OR5B3Q8NH48 314 aa4.36□□□□□ -1.71
CUX1-208ENST00000485792 OR51H1Q8NH63 302 aa4.36□□□□□ -1.71
CUX1-208ENST00000485792 MCFD2Q8NI22 146 aa4.36□□□□□ -1.71
CUX1-208ENST00000485792 GRPEL2Q8TAA5 225 aa4.36□□□□□ -1.71
CUX1-208ENST00000485792 DCUN1D4Q92564 292 aa4.36□□□□□ -1.71
CUX1-208ENST00000485792 GALNT14Q96FL9 552 aa4.36□□□□□ -1.71
CUX1-208ENST00000485792 C16orf92Q96LL3 132 aa4.36□□□□□ -1.71
CUX1-208ENST00000485792 OR5B12Q96R08 314 aa4.36□□□□□ -1.71
CUX1-208ENST00000485792 TP53RKQ96S44 253 aa4.36□□□□□ -1.71
CUX1-208ENST00000485792 THAP7Q9BT49 309 aaPredicted RBP4.36□□□□□ -1.71
CUX1-208ENST00000485792 GPR61Q9BZJ8 451 aa4.36□□□□□ -1.71
CUX1-208ENST00000485792 ZMAT4Q9H898 229 aa4.36□□□□□ -1.71
CUX1-208ENST00000485792 RANGRFQ9HD47 186 aaPredicted RBP4.36□□□□□ -1.71
CUX1-208ENST00000485792 TMEM140Q9NV12 185 aa4.36□□□□□ -1.71
CUX1-208ENST00000485792 NDUFA13Q9P0J0 144 aa4.36□□□□□ -1.71
CUX1-208ENST00000485792 PLECQ15149 4684 aaKnown RBP4.36□□□□□ -1.71
CUX1-208ENST00000485792 A0A0B4J293 547 aa4.35□□□□□ -1.71
CUX1-208ENST00000485792 FABP12A6NFH5 140 aa4.35□□□□□ -1.71
CUX1-208ENST00000485792 CRYM-AS1A6NIL9 109 aa4.35□□□□□ -1.71
CUX1-208ENST00000485792 C15orf61A6NNL5 157 aa4.35□□□□□ -1.71
CUX1-208ENST00000485792 BMPR1BO00238 502 aa4.35□□□□□ -1.71
CUX1-208ENST00000485792 IGLV1-51P01701 117 aa4.35□□□□□ -1.71
CUX1-208ENST00000485792 IGHV3-11P01762 117 aa4.35□□□□□ -1.71
CUX1-208ENST00000485792 SERPINE2P07093 398 aa4.35□□□□□ -1.71
CUX1-208ENST00000485792 AKAIN1P0CW23 69 aa4.35□□□□□ -1.71
CUX1-208ENST00000485792 BTCP35070 178 aa4.35□□□□□ -1.71
CUX1-208ENST00000485792 PIGPP57054 158 aa4.35□□□□□ -1.71
CUX1-208ENST00000485792 TPPP2P59282 170 aa4.35□□□□□ -1.71
CUX1-208ENST00000485792 SUPT4H1P63272 117 aaKnown RBP4.35□□□□□ -1.71
CUX1-208ENST00000485792 RHOGP84095 191 aa4.35□□□□□ -1.71
CUX1-208ENST00000485792 DHODHQ02127 395 aa4.35□□□□□ -1.71
CUX1-208ENST00000485792 IL18Q14116 193 aa4.35□□□□□ -1.71
CUX1-208ENST00000485792 PHLDA2Q53GA4 152 aa4.35□□□□□ -1.71
CUX1-208ENST00000485792 KHDC1LQ5JSQ8 128 aa4.35□□□□□ -1.71
CUX1-208ENST00000485792 C9orf66Q5T8R8 295 aa4.35□□□□□ -1.71
CUX1-208ENST00000485792 Q6ZRM9 215 aa4.35□□□□□ -1.71
CUX1-208ENST00000485792 GPHB5Q86YW7 130 aa4.35□□□□□ -1.71
CUX1-208ENST00000485792 STPG3Q8N7X2 389 aa4.35□□□□□ -1.71
CUX1-208ENST00000485792 OR10W1Q8NGF6 305 aa4.35□□□□□ -1.71
CUX1-208ENST00000485792 OR1L8Q8NGR8 309 aa4.35□□□□□ -1.71
CUX1-208ENST00000485792 ZNF502Q8TBZ5 544 aa4.35□□□□□ -1.71
CUX1-208ENST00000485792 ZFAND1Q8TCF1 268 aa4.35□□□□□ -1.71
CUX1-208ENST00000485792 MARCH1Q8TCQ1 289 aa4.35□□□□□ -1.71
CUX1-208ENST00000485792 TMEM56Q96MV1 263 aa4.35□□□□□ -1.71
CUX1-208ENST00000485792 MS4A10Q96PG2 267 aa4.35□□□□□ -1.71
CUX1-208ENST00000485792 TSC22D3Q99576 134 aa4.35□□□□□ -1.71
CUX1-208ENST00000485792 DCUN1D5Q9BTE7 237 aa4.35□□□□□ -1.71
CUX1-208ENST00000485792 QTRT1Q9BXR0 403 aaKnown RBP4.35□□□□□ -1.71
CUX1-208ENST00000485792 SRRQ9GZT4 340 aa4.35□□□□□ -1.71
CUX1-208ENST00000485792 TMEM222Q9H0R3 208 aa4.35□□□□□ -1.71
CUX1-208ENST00000485792 S4R3C0 116 aa4.35□□□□□ -1.71
CUX1-208ENST00000485792 TMEM56-RWDD3S4R434 201 aa4.35□□□□□ -1.71
CUX1-208ENST00000485792 C3orf85A0A1B0GTC6 90 aa4.34□□□□□ -1.71
CUX1-208ENST00000485792 DPPA5A6NC42 116 aa4.34□□□□□ -1.71
CUX1-208ENST00000485792 MFSD2BA6NFX1 497 aa4.34□□□□□ -1.71
CUX1-208ENST00000485792 A8MWP6 167 aa4.34□□□□□ -1.71
CUX1-208ENST00000485792 LGALS9O00182 355 aa4.34□□□□□ -1.71
CUX1-208ENST00000485792 OVOL1O14753 267 aa4.34□□□□□ -1.71
CUX1-208ENST00000485792 ACTL6BO94805 426 aa4.34□□□□□ -1.71
CUX1-208ENST00000485792 NDUFB8O95169 186 aa4.34□□□□□ -1.71
CUX1-208ENST00000485792 KRASP01116 189 aa4.34□□□□□ -1.71
CUX1-208ENST00000485792 HLA-AP01891 365 aaKnown RBP4.34□□□□□ -1.71
CUX1-208ENST00000485792 IFNA6P05013 189 aa4.34□□□□□ -1.71
CUX1-208ENST00000485792 REG1AP05451 166 aa4.34□□□□□ -1.71
CUX1-208ENST00000485792 CSN3P07498 182 aa4.34□□□□□ -1.71
CUX1-208ENST00000485792 C8orf88P0DMB2 117 aa4.34□□□□□ -1.71
CUX1-208ENST00000485792 HIST1H1BP16401 226 aaKnown RBP4.34□□□□□ -1.71
CUX1-208ENST00000485792 ZP3P21754 424 aa4.34□□□□□ -1.71
CUX1-208ENST00000485792 CD40LGP29965 261 aa4.34□□□□□ -1.71
CUX1-208ENST00000485792 G6PCP35575 357 aa4.34□□□□□ -1.71
CUX1-208ENST00000485792 HSPE1P61604 102 aaKnown RBP4.34□□□□□ -1.71
CUX1-208ENST00000485792 C15orf32Q32M92 178 aa4.34□□□□□ -1.71
CUX1-208ENST00000485792 SSX9Q7RTT3 188 aa4.34□□□□□ -1.71
CUX1-208ENST00000485792 OR2C3Q8N628 320 aa4.34□□□□□ -1.71
CUX1-208ENST00000485792 LRTM2Q8N967 370 aa4.34□□□□□ -1.71
CUX1-208ENST00000485792 OR51S1Q8NGJ8 323 aa4.34□□□□□ -1.71
CUX1-208ENST00000485792 OR52E5Q8NH55 327 aa4.34□□□□□ -1.71
CUX1-208ENST00000485792 VN1R17PQ8TDU5 208 aa4.34□□□□□ -1.71
CUX1-208ENST00000485792 TMEM170AQ8WVE7 144 aa4.34□□□□□ -1.71
CUX1-208ENST00000485792 PRRT1Q99946 306 aa4.34□□□□□ -1.71
CUX1-208ENST00000485792 C6orf62Q9GZU0 229 aaPredicted RBP4.34□□□□□ -1.71
CUX1-208ENST00000485792 HRASLSQ9HDD0 168 aa4.34□□□□□ -1.71
CUX1-208ENST00000485792 COA4Q9NYJ1 87 aa4.34□□□□□ -1.71
CUX1-208ENST00000485792 FKBP11Q9NYL4 201 aa4.34□□□□□ -1.71
CUX1-208ENST00000485792 MRPL36Q9P0J6 103 aaKnown RBP4.34□□□□□ -1.71
CUX1-208ENST00000485792 PEF1Q9UBV8 284 aaKnown RBP4.34□□□□□ -1.71
CUX1-208ENST00000485792 ZMAT5Q9UDW3 170 aaKnown RBP4.34□□□□□ -1.71
CUX1-208ENST00000485792 PRNDQ9UKY0 176 aa4.34□□□□□ -1.71
CUX1-208ENST00000485792 NSG2Q9Y328 171 aa4.34□□□□□ -1.71
CUX1-208ENST00000485792 F11RQ9Y624 299 aaKnown RBP4.34□□□□□ -1.71
CUX1-208ENST00000485792 SELENOKQ9Y6D0 94 aa4.34□□□□□ -1.71
CUX1-208ENST00000485792 TENM2Q9NT68 2774 aa4.33□□□□□ -1.72
CUX1-208ENST00000485792 TRBV7-1A0A0A6YYK4 115 aa4.33□□□□□ -1.72
CUX1-208ENST00000485792 TEX13DA0A0J9YY54 714 aaPredicted RBP4.33□□□□□ -1.72
CUX1-208ENST00000485792 C13orf42A0A1B0GVH6 325 aa4.33□□□□□ -1.72
CUX1-208ENST00000485792 IZUMO1RA6ND01 250 aa4.33□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms