RNA–Protein interactions for RNA: ENST00000482733.1

HMGN1-214, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 701 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-214ENST00000482733 PLEKHA3Q9HB20 300 aa12.78□□□□□ -0.36
HMGN1-214ENST00000482733 CACFD1Q9UGQ2 172 aa12.78□□□□□ -0.36
HMGN1-214ENST00000482733 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP12.77□□□□□ -0.37
HMGN1-214ENST00000482733 LINC00854A0A1B0GVQ3 168 aa12.77□□□□□ -0.37
HMGN1-214ENST00000482733 SEC14L6B5MCN3 397 aa12.77□□□□□ -0.37
HMGN1-214ENST00000482733 WIPF1O43516 503 aa12.77□□□□□ -0.37
HMGN1-214ENST00000482733 NDUFB8O95169 186 aa12.77□□□□□ -0.37
HMGN1-214ENST00000482733 HOXD3P31249 432 aaPredicted RBP12.77□□□□□ -0.37
HMGN1-214ENST00000482733 CCR6P51684 374 aa12.77□□□□□ -0.37
HMGN1-214ENST00000482733 SUPT4H1P63272 117 aaKnown RBP12.77□□□□□ -0.37
HMGN1-214ENST00000482733 ERHP84090 104 aaKnown RBP12.77□□□□□ -0.37
HMGN1-214ENST00000482733 IZUMO4Q1ZYL8 232 aa12.77□□□□□ -0.37
HMGN1-214ENST00000482733 LGI3Q8N145 548 aa12.77□□□□□ -0.37
HMGN1-214ENST00000482733 CENPSQ8N2Z9 138 aa12.77□□□□□ -0.37
HMGN1-214ENST00000482733 DLX4Q92988 240 aaPredicted RBP12.77□□□□□ -0.37
HMGN1-214ENST00000482733 EEF1AKMT3Q96AZ1 226 aa12.77□□□□□ -0.37
HMGN1-214ENST00000482733 CTNNBIP1Q9NSA3 81 aaPredicted RBP12.77□□□□□ -0.37
HMGN1-214ENST00000482733 F11RQ9Y624 299 aaKnown RBP12.77□□□□□ -0.37
HMGN1-214ENST00000482733 NOTCH1P46531 2555 aa12.76□□□□□ -0.37
HMGN1-214ENST00000482733 A0A0B4J2A0 478 aa12.76□□□□□ -0.37
HMGN1-214ENST00000482733 A0A0G2JRQ6 117 aa12.76□□□□□ -0.37
HMGN1-214ENST00000482733 ST8SIA3O43173 380 aa12.76□□□□□ -0.37
HMGN1-214ENST00000482733 NDUFB6O95139 128 aa12.76□□□□□ -0.37
HMGN1-214ENST00000482733 IFNA17P01571 189 aa12.76□□□□□ -0.37
HMGN1-214ENST00000482733 INSL3P51460 131 aa12.76□□□□□ -0.37
HMGN1-214ENST00000482733 UBE2MP61081 183 aaKnown RBP12.76□□□□□ -0.37
HMGN1-214ENST00000482733 TATDN3Q17R31 274 aa12.76□□□□□ -0.37
HMGN1-214ENST00000482733 SLC25A24Q6NUK1 477 aa12.76□□□□□ -0.37
HMGN1-214ENST00000482733 REC114Q7Z4M0 266 aa12.76□□□□□ -0.37
HMGN1-214ENST00000482733 OR2C3Q8N628 320 aa12.76□□□□□ -0.37
HMGN1-214ENST00000482733 SLC35G3Q8N808 338 aa12.76□□□□□ -0.37
HMGN1-214ENST00000482733 OR1P1Q8NH06 330 aa12.76□□□□□ -0.37
HMGN1-214ENST00000482733 WDR12Q9GZL7 423 aaKnown RBP12.76□□□□□ -0.37
HMGN1-214ENST00000482733 SHPKQ9UHJ6 478 aa12.76□□□□□ -0.37
HMGN1-214ENST00000482733 NOTCH3Q9UM47 2321 aa12.76□□□□□ -0.37
HMGN1-214ENST00000482733 TRBV7-1A0A0A6YYK4 115 aa12.75□□□□□ -0.37
HMGN1-214ENST00000482733 DUXBA0A1W2PPF3 345 aa12.75□□□□□ -0.37
HMGN1-214ENST00000482733 INS-IGF2F8WCM5 200 aa12.75□□□□□ -0.37
HMGN1-214ENST00000482733 EGFEM1PQ0D2K5 195 aa12.75□□□□□ -0.37
HMGN1-214ENST00000482733 RPEL1Q2QD12 228 aa12.75□□□□□ -0.37
HMGN1-214ENST00000482733 AARDQ4LEZ3 155 aa12.75□□□□□ -0.37
HMGN1-214ENST00000482733 ZNF114Q8NC26 417 aa12.75□□□□□ -0.37
HMGN1-214ENST00000482733 OR52E5Q8NH55 327 aa12.75□□□□□ -0.37
HMGN1-214ENST00000482733 VN1R17PQ8TDU5 208 aa12.75□□□□□ -0.37
HMGN1-214ENST00000482733 GPR146Q96CH1 333 aa12.75□□□□□ -0.37
HMGN1-214ENST00000482733 SFT2D2O95562 160 aa12.74□□□□□ -0.37
HMGN1-214ENST00000482733 TRBV12-3P01733 135 aa12.74□□□□□ -0.37
HMGN1-214ENST00000482733 VAMP1P23763 118 aa12.74□□□□□ -0.37
HMGN1-214ENST00000482733 SPCS3P61009 180 aa12.74□□□□□ -0.37
HMGN1-214ENST00000482733 KLF5Q13887 457 aaPredicted RBP12.74□□□□□ -0.37
HMGN1-214ENST00000482733 ZNF846Q147U1 533 aa12.74□□□□□ -0.37
HMGN1-214ENST00000482733 Q6ZRM9 215 aa12.74□□□□□ -0.37
HMGN1-214ENST00000482733 ELOVL1Q9BW60 279 aa12.74□□□□□ -0.37
HMGN1-214ENST00000482733 ENY2Q9NPA8 101 aa12.74□□□□□ -0.37
HMGN1-214ENST00000482733 CACNG5Q9UF02 275 aa12.74□□□□□ -0.37
HMGN1-214ENST00000482733 DMRT1Q9Y5R6 373 aa12.74□□□□□ -0.37
HMGN1-214ENST00000482733 DNAH3Q8TD57 4116 aa12.73□□□□□ -0.37
HMGN1-214ENST00000482733 BMPR1BO00238 502 aa12.73□□□□□ -0.37
HMGN1-214ENST00000482733 PLA2G10O15496 165 aa12.73□□□□□ -0.37
HMGN1-214ENST00000482733 LYRM1O43325 122 aa12.73□□□□□ -0.37
HMGN1-214ENST00000482733 GGCTO75223 188 aaKnown RBP12.73□□□□□ -0.37
HMGN1-214ENST00000482733 SULT1A3P0DMM9 295 aa12.73□□□□□ -0.37
HMGN1-214ENST00000482733 SULT1A4P0DMN0 295 aa12.73□□□□□ -0.37
HMGN1-214ENST00000482733 BTCP35070 178 aa12.73□□□□□ -0.37
HMGN1-214ENST00000482733 SNCAP37840 140 aa12.73□□□□□ -0.37
HMGN1-214ENST00000482733 HOXA1P49639 335 aaPredicted RBP12.73□□□□□ -0.37
HMGN1-214ENST00000482733 PPP1R1AQ13522 171 aa12.73□□□□□ -0.37
HMGN1-214ENST00000482733 PDLIM3Q53GG5 364 aaPredicted RBP12.73□□□□□ -0.37
HMGN1-214ENST00000482733 ACSM6Q6P461 480 aa12.73□□□□□ -0.37
HMGN1-214ENST00000482733 LRTM2Q8N967 370 aa12.73□□□□□ -0.37
HMGN1-214ENST00000482733 ATP6V0BQ99437 205 aa12.73□□□□□ -0.37
HMGN1-214ENST00000482733 PRR13Q9NZ81 148 aa12.73□□□□□ -0.37
HMGN1-214ENST00000482733 MFSD2BA6NFX1 497 aa12.72□□□□□ -0.37
HMGN1-214ENST00000482733 SUB1P53999 127 aaKnown RBP eCLIP12.72□□□□□ -0.37
HMGN1-214ENST00000482733 NMSQ5H8A3 153 aa12.72□□□□□ -0.37
HMGN1-214ENST00000482733 CLEC19AQ6UXS0 136 aa12.72□□□□□ -0.37
HMGN1-214ENST00000482733 LYZL2Q7Z4W2 148 aa12.72□□□□□ -0.37
HMGN1-214ENST00000482733 ZNF502Q8TBZ5 544 aa12.72□□□□□ -0.37
HMGN1-214ENST00000482733 CCDC140Q96MF4 163 aa12.72□□□□□ -0.37
HMGN1-214ENST00000482733 OR4C12Q96R67 309 aa12.72□□□□□ -0.37
HMGN1-214ENST00000482733 SAP30O75446 220 aa12.71□□□□□ -0.37
HMGN1-214ENST00000482733 IGHV3-23P01764 117 aa12.71□□□□□ -0.37
HMGN1-214ENST00000482733 ARL3P36405 182 aa12.71□□□□□ -0.37
HMGN1-214ENST00000482733 MFAP2P55001 183 aa12.71□□□□□ -0.37
HMGN1-214ENST00000482733 SYNJ2BPP57105 145 aa12.71□□□□□ -0.37
HMGN1-214ENST00000482733 SMCO1Q147U7 214 aa12.71□□□□□ -0.37
HMGN1-214ENST00000482733 SPINK9Q5DT21 86 aa12.71□□□□□ -0.37
HMGN1-214ENST00000482733 OR9G4Q8NGQ1 327 aa12.71□□□□□ -0.37
HMGN1-214ENST00000482733 TMED3Q9Y3Q3 217 aa12.71□□□□□ -0.37
HMGN1-214ENST00000482733 A0A1B0GU03 582 aa12.7□□□□□ -0.38
HMGN1-214ENST00000482733 PPP5D1E7EU14 171 aa12.7□□□□□ -0.38
HMGN1-214ENST00000482733 CLEC3BP05452 202 aa12.7□□□□□ -0.38
HMGN1-214ENST00000482733 ANKRD55Q3KP44 614 aa12.7□□□□□ -0.38
HMGN1-214ENST00000482733 GAR1Q9NY12 217 aaKnown RBP12.7□□□□□ -0.38
HMGN1-214ENST00000482733 C21orf62Q9NYP8 219 aa12.7□□□□□ -0.38
HMGN1-214ENST00000482733 PEMTQ9UBM1 199 aa12.7□□□□□ -0.38
HMGN1-214ENST00000482733 FLVCR2Q9UPI3 526 aa12.7□□□□□ -0.38
HMGN1-214ENST00000482733 S4R3C0 116 aa12.7□□□□□ -0.38
HMGN1-214ENST00000482733 C9orf170A2RU37 121 aa12.69□□□□□ -0.38
HMGN1-214ENST00000482733 CEBPZOSA8MTT3 80 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms