RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 NPIPB3Q92617 1050 aa11.32□□□□□ -0.6
USP42-206ENST00000479544 C1QTNF5Q9BXJ0 243 aa11.32□□□□□ -0.6
USP42-206ENST00000479544 CHRNA10Q9GZZ6 450 aa11.32□□□□□ -0.6
USP42-206ENST00000479544 KIAA1671Q9BY89 1806 aa11.32□□□□□ -0.6
USP42-206ENST00000479544 ZNF324O75467 553 aaPredicted RBP11.32□□□□□ -0.6
USP42-206ENST00000479544 COX7A1P24310 79 aa11.32□□□□□ -0.6
USP42-206ENST00000479544 PLP1P60201 277 aa11.32□□□□□ -0.6
USP42-206ENST00000479544 C12orf54Q6X4T0 127 aa11.32□□□□□ -0.6
USP42-206ENST00000479544 EAF1Q96JC9 268 aaPredicted RBP11.32□□□□□ -0.6
USP42-206ENST00000479544 TMEM70Q9BUB7 260 aa11.32□□□□□ -0.6
USP42-206ENST00000479544 C8orf88P0DMB2 117 aa11.32□□□□□ -0.6
USP42-206ENST00000479544 GCSHP23434 173 aa11.32□□□□□ -0.6
USP42-206ENST00000479544 CCL8P80075 99 aa11.32□□□□□ -0.6
USP42-206ENST00000479544 TCF24Q7RTU0 167 aa11.32□□□□□ -0.6
USP42-206ENST00000479544 TXNDC17Q9BRA2 123 aa11.32□□□□□ -0.6
USP42-206ENST00000479544 C2CD3Q4AC94 2353 aa11.32□□□□□ -0.6
USP42-206ENST00000479544 A8MWL6 223 aa11.32□□□□□ -0.6
USP42-206ENST00000479544 FOXH1O75593 365 aa11.32□□□□□ -0.6
USP42-206ENST00000479544 NIT1Q86X76 327 aa11.32□□□□□ -0.6
USP42-206ENST00000479544 C5orf17Q8NAS9 161 aa11.32□□□□□ -0.6
USP42-206ENST00000479544 TMEM116Q8NCL8 245 aa11.32□□□□□ -0.6
USP42-206ENST00000479544 LYPD6BQ8NI32 183 aa11.32□□□□□ -0.6
USP42-206ENST00000479544 YTHDF2Q9Y5A9 579 aaKnown RBP11.32□□□□□ -0.6
USP42-206ENST00000479544 MOSP00540 346 aa11.31□□□□□ -0.6
USP42-206ENST00000479544 RPL11P62913 178 aaKnown RBP11.31□□□□□ -0.6
USP42-206ENST00000479544 PCSK4Q6UW60 755 aa11.31□□□□□ -0.6
USP42-206ENST00000479544 ZFP30Q9Y2G7 519 aa11.31□□□□□ -0.6
USP42-206ENST00000479544 NUPR1O60356 82 aa11.31□□□□□ -0.6
USP42-206ENST00000479544 UMODP07911 640 aa11.31□□□□□ -0.6
USP42-206ENST00000479544 C3orf79P0CE67 100 aa11.31□□□□□ -0.6
USP42-206ENST00000479544 C19orf35Q6ZS72 473 aa11.31□□□□□ -0.6
USP42-206ENST00000479544 FADS6Q8N9I5 356 aa11.31□□□□□ -0.6
USP42-206ENST00000479544 ASCL3Q9NQ33 180 aa11.31□□□□□ -0.6
USP42-206ENST00000479544 CLEC3BP05452 202 aa11.31□□□□□ -0.6
USP42-206ENST00000479544 OR9G9P0C7N8 305 aa11.31□□□□□ -0.6
USP42-206ENST00000479544 TNFAIP6P98066 277 aaPredicted RBP11.31□□□□□ -0.6
USP42-206ENST00000479544 SLC35E4Q6ICL7 350 aa11.31□□□□□ -0.6
USP42-206ENST00000479544 S100A7AQ86SG5 101 aa11.31□□□□□ -0.6
USP42-206ENST00000479544 SAXO1Q8IYX7 474 aa11.31□□□□□ -0.6
USP42-206ENST00000479544 DNASE2BQ8WZ79 361 aa11.31□□□□□ -0.6
USP42-206ENST00000479544 PRNDQ9UKY0 176 aa11.31□□□□□ -0.6
USP42-206ENST00000479544 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.3□□□□□ -0.6
USP42-206ENST00000479544 PSPNO60542 156 aa11.3□□□□□ -0.6
USP42-206ENST00000479544 MYOD1P15172 320 aa11.3□□□□□ -0.6
USP42-206ENST00000479544 Q6ZWC4 215 aa11.3□□□□□ -0.6
USP42-206ENST00000479544 PKIBQ9C010 78 aa11.3□□□□□ -0.6
USP42-206ENST00000479544 HIGD1CA8MV81 97 aa11.3□□□□□ -0.6
USP42-206ENST00000479544 F2Z2F3 143 aa11.3□□□□□ -0.6
USP42-206ENST00000479544 J3KRW8 73 aa11.3□□□□□ -0.6
USP42-206ENST00000479544 CA7P43166 264 aa11.3□□□□□ -0.6
USP42-206ENST00000479544 SLC25A53Q5H9E4 307 aa11.3□□□□□ -0.6
USP42-206ENST00000479544 IGLV3-19P01714 112 aa11.3□□□□□ -0.6
USP42-206ENST00000479544 PTGDSP41222 190 aa11.3□□□□□ -0.6
USP42-206ENST00000479544 GNG5P63218 68 aa11.3□□□□□ -0.6
USP42-206ENST00000479544 VMA21Q3ZAQ7 101 aa11.3□□□□□ -0.6
USP42-206ENST00000479544 AMMECR1LQ6DCA0 310 aa11.3□□□□□ -0.6
USP42-206ENST00000479544 FNDC4Q9H6D8 234 aaPredicted RBP11.3□□□□□ -0.6
USP42-206ENST00000479544 HSPB7Q9UBY9 170 aa11.3□□□□□ -0.6
USP42-206ENST00000479544 PYYP10082 97 aa11.29□□□□□ -0.6
USP42-206ENST00000479544 MPV17L2Q567V2 206 aa11.29□□□□□ -0.6
USP42-206ENST00000479544 LINC00479Q96M42 142 aa11.29□□□□□ -0.6
USP42-206ENST00000479544 HSPB8Q9UJY1 196 aa11.29□□□□□ -0.6
USP42-206ENST00000479544 ZNF716A6NP11 495 aa11.29□□□□□ -0.6
USP42-206ENST00000479544 KLF3P57682 345 aaPredicted RBP11.29□□□□□ -0.6
USP42-206ENST00000479544 PSG7Q13046 419 aa11.29□□□□□ -0.6
USP42-206ENST00000479544 EFNB3Q15768 340 aa11.29□□□□□ -0.6
USP42-206ENST00000479544 ATP1A1-AS1Q5TC04 95 aa11.29□□□□□ -0.6
USP42-206ENST00000479544 SAP25Q8TEE9 199 aa11.29□□□□□ -0.6
USP42-206ENST00000479544 SRSF12Q8WXF0 261 aaKnown RBP11.29□□□□□ -0.6
USP42-206ENST00000479544 SARAFQ96BY9 339 aa11.29□□□□□ -0.6
USP42-206ENST00000479544 FBXL7Q9UJT9 491 aa11.29□□□□□ -0.6
USP42-206ENST00000479544 ANAPC10Q9UM13 185 aa11.29□□□□□ -0.6
USP42-206ENST00000479544 WDR83OSQ9Y284 106 aa11.29□□□□□ -0.6
USP42-206ENST00000479544 RNF115Q9Y4L5 304 aa11.29□□□□□ -0.6
USP42-206ENST00000479544 TRAV3A0A0B4J244 114 aa11.29□□□□□ -0.6
USP42-206ENST00000479544 DCAF10Q5QP82 559 aa11.29□□□□□ -0.6
USP42-206ENST00000479544 DTX1Q86Y01 620 aa11.29□□□□□ -0.6
USP42-206ENST00000479544 OR1L8Q8NGR8 309 aa11.29□□□□□ -0.6
USP42-206ENST00000479544 PLXNA2O75051 1894 aa11.29□□□□□ -0.6
USP42-206ENST00000479544 TRAV5A0A0B4J249 113 aa11.29□□□□□ -0.6
USP42-206ENST00000479544 A6NDN8 102 aa11.29□□□□□ -0.6
USP42-206ENST00000479544 PRB3Q04118 309 aaPredicted RBP11.29□□□□□ -0.6
USP42-206ENST00000479544 ZNF585BQ52M93 769 aa11.29□□□□□ -0.6
USP42-206ENST00000479544 TREML4Q6UXN2 200 aa11.29□□□□□ -0.6
USP42-206ENST00000479544 LYPD6Q86Y78 171 aa11.29□□□□□ -0.6
USP42-206ENST00000479544 C1orf174Q8IYL3 243 aa11.29□□□□□ -0.6
USP42-206ENST00000479544 C18orf15Q96N68 181 aa11.29□□□□□ -0.6
USP42-206ENST00000479544 AGMATQ9BSE5 352 aa11.29□□□□□ -0.6
USP42-206ENST00000479544 ZNF138P52744 262 aa11.28□□□□□ -0.6
USP42-206ENST00000479544 OR9G1Q8NH87 305 aa11.28□□□□□ -0.6
USP42-206ENST00000479544 LSM4Q9Y4Z0 139 aaKnown RBP11.28□□□□□ -0.6
USP42-206ENST00000479544 NOTCH2Q04721 2471 aa11.28□□□□□ -0.6
USP42-206ENST00000479544 hDV102S1A0JD36 115 aa11.28□□□□□ -0.6
USP42-206ENST00000479544 HLA-DRB1P01911 266 aa11.28□□□□□ -0.6
USP42-206ENST00000479544 TMEM14EPQ6UXP3 125 aa11.28□□□□□ -0.6
USP42-206ENST00000479544 HAPLN4Q86UW8 402 aa11.28□□□□□ -0.6
USP42-206ENST00000479544 CALYQ9NYX4 217 aa11.28□□□□□ -0.6
USP42-206ENST00000479544 MGST3O14880 152 aa11.28□□□□□ -0.6
USP42-206ENST00000479544 DEFB109BQ30KR1 87 aa11.28□□□□□ -0.6
USP42-206ENST00000479544 OR4F17Q8NGA8 305 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms