RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 AMY1AP04745 511 aa12.11□□□□□ -0.47
HDAC6-220ENST00000477528 SPSB3Q6PJ21 355 aa12.11□□□□□ -0.47
HDAC6-220ENST00000477528 TBX15Q96SF7 602 aa12.11□□□□□ -0.47
HDAC6-220ENST00000477528 TRAV30A0A087WSZ9 112 aa12.11□□□□□ -0.47
HDAC6-220ENST00000477528 TMEM50AO95807 157 aa12.11□□□□□ -0.47
HDAC6-220ENST00000477528 GCSAMLQ5JQS6 135 aa12.11□□□□□ -0.47
HDAC6-220ENST00000477528 IL36BQ9NZH7 164 aa12.11□□□□□ -0.47
HDAC6-220ENST00000477528 ZNF257Q9Y2Q1 563 aa12.11□□□□□ -0.47
HDAC6-220ENST00000477528 RNASE6Q93091 150 aaKnown RBP12.1□□□□□ -0.47
HDAC6-220ENST00000477528 HSPB9Q9BQS6 159 aa12.1□□□□□ -0.47
HDAC6-220ENST00000477528 BET1LQ9NYM9 111 aa12.1□□□□□ -0.47
HDAC6-220ENST00000477528 PPOXP50336 477 aa12.1□□□□□ -0.47
HDAC6-220ENST00000477528 GATA2P23769 480 aaPredicted RBP12.1□□□□□ -0.47
HDAC6-220ENST00000477528 MFAP4P55083 255 aa12.1□□□□□ -0.47
HDAC6-220ENST00000477528 NUP37Q8NFH4 326 aa12.1□□□□□ -0.47
HDAC6-220ENST00000477528 VN1R17PQ8TDU5 208 aa12.1□□□□□ -0.47
HDAC6-220ENST00000477528 NAGKQ9UJ70 344 aa12.1□□□□□ -0.47
HDAC6-220ENST00000477528 CD99P14209 185 aa12.09□□□□□ -0.47
HDAC6-220ENST00000477528 S100A4P26447 101 aaKnown RBP12.09□□□□□ -0.47
HDAC6-220ENST00000477528 PAX9P55771 341 aa12.09□□□□□ -0.47
HDAC6-220ENST00000477528 C5orf17Q8NAS9 161 aa12.09□□□□□ -0.47
HDAC6-220ENST00000477528 VKORC1Q9BQB6 163 aa12.09□□□□□ -0.47
HDAC6-220ENST00000477528 GGTLC1Q9BX51 225 aa12.09□□□□□ -0.47
HDAC6-220ENST00000477528 CA7P43166 264 aa12.09□□□□□ -0.47
HDAC6-220ENST00000477528 EFNB3Q15768 340 aa12.09□□□□□ -0.47
HDAC6-220ENST00000477528 C1QL4Q86Z23 238 aa12.09□□□□□ -0.47
HDAC6-220ENST00000477528 SPACA3Q8IXA5 215 aa12.09□□□□□ -0.47
HDAC6-220ENST00000477528 YTHDF2Q9Y5A9 579 aaKnown RBP12.09□□□□□ -0.47
HDAC6-220ENST00000477528 FER1L5A0AVI2 2057 aa12.09□□□□□ -0.47
HDAC6-220ENST00000477528 CSN3P07498 182 aa12.09□□□□□ -0.47
HDAC6-220ENST00000477528 CD69Q07108 199 aa12.09□□□□□ -0.47
HDAC6-220ENST00000477528 C10orf91Q5T1B1 145 aa12.09□□□□□ -0.47
HDAC6-220ENST00000477528 SNRNP40Q96DI7 357 aaKnown RBP12.09□□□□□ -0.47
HDAC6-220ENST00000477528 TMEM133Q9H2Q1 129 aa12.09□□□□□ -0.47
HDAC6-220ENST00000477528 DPM3Q9P2X0 92 aa12.09□□□□□ -0.47
HDAC6-220ENST00000477528 TRAV9-1A0A075B6T8 112 aa12.09□□□□□ -0.47
HDAC6-220ENST00000477528 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.09□□□□□ -0.47
HDAC6-220ENST00000477528 FBXL15Q9H469 300 aa12.09□□□□□ -0.47
HDAC6-220ENST00000477528 APC2O95996 2303 aa12.09□□□□□ -0.47
HDAC6-220ENST00000477528 ROS1P08922 2347 aa12.09□□□□□ -0.47
HDAC6-220ENST00000477528 TRBV24-1A0A075B6N3 115 aa12.08□□□□□ -0.47
HDAC6-220ENST00000477528 C5orf52A6NGY3 159 aa12.08□□□□□ -0.47
HDAC6-220ENST00000477528 RELBQ01201 579 aa12.08□□□□□ -0.47
HDAC6-220ENST00000477528 Q6ZR03 302 aa12.08□□□□□ -0.47
HDAC6-220ENST00000477528 TEX50A0A1B0GTY4 177 aa12.08□□□□□ -0.48
HDAC6-220ENST00000477528 STAG3L2P0CL84 134 aa12.08□□□□□ -0.48
HDAC6-220ENST00000477528 STAG3L3P0CL85 134 aa12.08□□□□□ -0.48
HDAC6-220ENST00000477528 CBLN1P23435 193 aa12.08□□□□□ -0.48
HDAC6-220ENST00000477528 BMI1P35226 326 aa12.08□□□□□ -0.48
HDAC6-220ENST00000477528 ZNF137PP52743 207 aa12.08□□□□□ -0.48
HDAC6-220ENST00000477528 LPAR2Q9HBW0 351 aa12.08□□□□□ -0.48
HDAC6-220ENST00000477528 DIRC3C9JPN6 131 aa12.08□□□□□ -0.48
HDAC6-220ENST00000477528 HIST1H2BKO60814 126 aa12.08□□□□□ -0.48
HDAC6-220ENST00000477528 HIST1H2BJP06899 126 aa12.08□□□□□ -0.48
HDAC6-220ENST00000477528 HIST1H2BOP23527 126 aa12.08□□□□□ -0.48
HDAC6-220ENST00000477528 HIST1H2BBP33778 126 aa12.08□□□□□ -0.48
HDAC6-220ENST00000477528 HIST1H2BDP58876 126 aa12.08□□□□□ -0.48
HDAC6-220ENST00000477528 HIST1H2BCP62807 126 aa12.08□□□□□ -0.48
HDAC6-220ENST00000477528 HIST2H2BEQ16778 126 aa12.08□□□□□ -0.48
HDAC6-220ENST00000477528 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.08□□□□□ -0.48
HDAC6-220ENST00000477528 HIST1H2BHQ93079 126 aa12.08□□□□□ -0.48
HDAC6-220ENST00000477528 HIST1H2BNQ99877 126 aa12.08□□□□□ -0.48
HDAC6-220ENST00000477528 HIST1H2BMQ99879 126 aa12.08□□□□□ -0.48
HDAC6-220ENST00000477528 SLC17A3O00476 420 aa12.08□□□□□ -0.48
HDAC6-220ENST00000477528 GAFA1Q96PS6 74 aa12.08□□□□□ -0.48
HDAC6-220ENST00000477528 TRAV3A0A0B4J244 114 aa12.07□□□□□ -0.48
HDAC6-220ENST00000477528 SLC31A2O15432 143 aa12.07□□□□□ -0.48
HDAC6-220ENST00000477528 CXCL1P09341 107 aa12.07□□□□□ -0.48
HDAC6-220ENST00000477528 FCGR2BP31994 310 aaPredicted RBP12.07□□□□□ -0.48
HDAC6-220ENST00000477528 LINC00205P59089 165 aa12.07□□□□□ -0.48
HDAC6-220ENST00000477528 TMEM191AQ9H0A3 160 aa12.07□□□□□ -0.48
HDAC6-220ENST00000477528 C15orf62A8K5M9 175 aa12.07□□□□□ -0.48
HDAC6-220ENST00000477528 TNFSF13O75888 250 aa12.07□□□□□ -0.48
HDAC6-220ENST00000477528 IGKV1-39P01597 117 aa12.07□□□□□ -0.48
HDAC6-220ENST00000477528 IGKV1D-39P04432 117 aa12.07□□□□□ -0.48
HDAC6-220ENST00000477528 NBEAP1P0C6P0 100 aa12.07□□□□□ -0.48
HDAC6-220ENST00000477528 NEU4Q8WWR8 484 aaPredicted RBP12.07□□□□□ -0.48
HDAC6-220ENST00000477528 PAM16Q9Y3D7 125 aa12.07□□□□□ -0.48
HDAC6-220ENST00000477528 TMEM177Q53S58 311 aa12.07□□□□□ -0.48
HDAC6-220ENST00000477528 A0A0G2JNJ9 132 aa12.07□□□□□ -0.48
HDAC6-220ENST00000477528 GRIFINA4D1Z8 144 aa12.07□□□□□ -0.48
HDAC6-220ENST00000477528 ITGB1BP1O14713 200 aa12.07□□□□□ -0.48
HDAC6-220ENST00000477528 C1QTNF9P0C862 333 aa12.07□□□□□ -0.48
HDAC6-220ENST00000477528 Q9UFV3 132 aa12.07□□□□□ -0.48
HDAC6-220ENST00000477528 M0QZ24 198 aa12.06□□□□□ -0.48
HDAC6-220ENST00000477528 ORM1P02763 201 aa12.06□□□□□ -0.48
HDAC6-220ENST00000477528 IGFL3Q6UXB1 125 aa12.06□□□□□ -0.48
HDAC6-220ENST00000477528 MAS1LP35410 378 aa12.06□□□□□ -0.48
HDAC6-220ENST00000477528 TAS2R60P59551 318 aa12.06□□□□□ -0.48
HDAC6-220ENST00000477528 SPRY4Q9C004 299 aa12.06□□□□□ -0.48
HDAC6-220ENST00000477528 ESPL1Q14674 2120 aa12.06□□□□□ -0.48
HDAC6-220ENST00000477528 TMEM178BH3BS89 294 aa12.06□□□□□ -0.48
HDAC6-220ENST00000477528 H3BTX0 84 aa12.06□□□□□ -0.48
HDAC6-220ENST00000477528 PEX7O00628 323 aa12.06□□□□□ -0.48
HDAC6-220ENST00000477528 IGLV1-44P01699 117 aa12.06□□□□□ -0.48
HDAC6-220ENST00000477528 DDTP30046 118 aa12.06□□□□□ -0.48
HDAC6-220ENST00000477528 SRIP30626 198 aa12.06□□□□□ -0.48
HDAC6-220ENST00000477528 C2orf83Q53S99 150 aa12.06□□□□□ -0.48
HDAC6-220ENST00000477528 ZNF788Q6ZQV5 615 aa12.06□□□□□ -0.48
HDAC6-220ENST00000477528 FGF23Q9GZV9 251 aaPredicted RBP12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms