RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-208ENST00000470076 TMEM14BQ9NUH8 114 aa13□□□□□ -0.33
COL7A1-208ENST00000470076 IGHV3-21A0A0B4J1V1 117 aa12.99□□□□□ -0.33
COL7A1-208ENST00000470076 OR4C46A6NHA9 309 aa12.99□□□□□ -0.33
COL7A1-208ENST00000470076 C15orf61A6NNL5 157 aa12.99□□□□□ -0.33
COL7A1-208ENST00000470076 C15orf62A8K5M9 175 aa12.99□□□□□ -0.33
COL7A1-208ENST00000470076 F8W735 103 aaPredicted RBP12.99□□□□□ -0.33
COL7A1-208ENST00000470076 BMI1P35226 326 aa12.99□□□□□ -0.33
COL7A1-208ENST00000470076 ADMP35318 185 aa12.99□□□□□ -0.33
COL7A1-208ENST00000470076 HRH1P35367 487 aa12.99□□□□□ -0.33
COL7A1-208ENST00000470076 Q56UQ5 140 aa12.99□□□□□ -0.33
COL7A1-208ENST00000470076 LPCAT3Q6P1A2 487 aa12.99□□□□□ -0.33
COL7A1-208ENST00000470076 LYSMD2Q8IV50 215 aa12.99□□□□□ -0.33
COL7A1-208ENST00000470076 UBAC2Q8NBM4 344 aa12.99□□□□□ -0.33
COL7A1-208ENST00000470076 OR1P1Q8NH06 330 aa12.99□□□□□ -0.33
COL7A1-208ENST00000470076 YIPF6Q96EC8 236 aa12.99□□□□□ -0.33
COL7A1-208ENST00000470076 VCX3AQ9NNX9 186 aa12.99□□□□□ -0.33
COL7A1-208ENST00000470076 UBQLN2Q9UHD9 624 aa12.99□□□□□ -0.33
COL7A1-208ENST00000470076 KIR2DL5BA0A0G2JN68 375 aa12.98□□□□□ -0.33
COL7A1-208ENST00000470076 KIR2DL5BA0A0G2JPC4 375 aa12.98□□□□□ -0.33
COL7A1-208ENST00000470076 SPRY2O43597 315 aa12.98□□□□□ -0.33
COL7A1-208ENST00000470076 HLA-DMAP28067 261 aa12.98□□□□□ -0.33
COL7A1-208ENST00000470076 LSM3P62310 102 aaKnown RBP12.98□□□□□ -0.33
COL7A1-208ENST00000470076 TNFRSF9Q07011 255 aa12.98□□□□□ -0.33
COL7A1-208ENST00000470076 ODF3L2Q3SX64 289 aa12.98□□□□□ -0.33
COL7A1-208ENST00000470076 KIR2DL5AQ8N109 375 aa12.98□□□□□ -0.33
COL7A1-208ENST00000470076 KIR2DL5BQ8NHK3 375 aa12.98□□□□□ -0.33
COL7A1-208ENST00000470076 GPX8Q8TED1 209 aa12.98□□□□□ -0.33
COL7A1-208ENST00000470076 A0A0J9YWU9 116 aa12.97□□□□□ -0.33
COL7A1-208ENST00000470076 CXorf65A6NEN9 183 aa12.97□□□□□ -0.33
COL7A1-208ENST00000470076 CTSGP08311 255 aa12.97□□□□□ -0.33
COL7A1-208ENST00000470076 TSPAN5P62079 268 aa12.97□□□□□ -0.33
COL7A1-208ENST00000470076 RELQ04864 619 aaPredicted RBP12.97□□□□□ -0.33
COL7A1-208ENST00000470076 DEFB135Q30KP9 77 aa12.97□□□□□ -0.33
COL7A1-208ENST00000470076 PHLDA2Q53GA4 152 aa12.97□□□□□ -0.33
COL7A1-208ENST00000470076 STPG3Q8N7X2 389 aa12.97□□□□□ -0.33
COL7A1-208ENST00000470076 SLC25A46Q96AG3 418 aa12.97□□□□□ -0.33
COL7A1-208ENST00000470076 SCPEP1Q9HB40 452 aa12.97□□□□□ -0.33
COL7A1-208ENST00000470076 IGHV3OR16-8A0A075B7F1 116 aa12.96□□□□□ -0.33
COL7A1-208ENST00000470076 A0A087WXM4 84 aa12.96□□□□□ -0.33
COL7A1-208ENST00000470076 SMIM31A0A1B0GVY4 71 aa12.96□□□□□ -0.33
COL7A1-208ENST00000470076 NUPR2A6NF83 97 aa12.96□□□□□ -0.33
COL7A1-208ENST00000470076 DBX1A6NMT0 343 aa12.96□□□□□ -0.33
COL7A1-208ENST00000470076 NUPL2O15504 423 aaKnown RBP12.96□□□□□ -0.33
COL7A1-208ENST00000470076 ZNF207O43670 478 aaKnown RBP12.96□□□□□ -0.33
COL7A1-208ENST00000470076 APOA1P02647 267 aa12.96□□□□□ -0.33
COL7A1-208ENST00000470076 EIF4EP06730 217 aaKnown RBP12.96□□□□□ -0.33
COL7A1-208ENST00000470076 CTSDP07339 412 aaPredicted RBP12.96□□□□□ -0.33
COL7A1-208ENST00000470076 FCGR2BP31994 310 aaPredicted RBP12.96□□□□□ -0.33
COL7A1-208ENST00000470076 LYG2Q86SG7 212 aa12.96□□□□□ -0.33
COL7A1-208ENST00000470076 TBC1D26Q86UD7 250 aa12.96□□□□□ -0.33
COL7A1-208ENST00000470076 LINC00476Q8WZB0 136 aa12.96□□□□□ -0.33
COL7A1-208ENST00000470076 GALNT14Q96FL9 552 aa12.96□□□□□ -0.33
COL7A1-208ENST00000470076 SEC22AQ96IW7 307 aa12.96□□□□□ -0.33
COL7A1-208ENST00000470076 CMTM3Q96MX0 182 aa12.96□□□□□ -0.33
COL7A1-208ENST00000470076 TXN2Q99757 166 aa12.96□□□□□ -0.33
COL7A1-208ENST00000470076 SMPXQ9UHP9 88 aa12.96□□□□□ -0.33
COL7A1-208ENST00000470076 ATF4P18848 351 aaPredicted RBP12.95□□□□□ -0.34
COL7A1-208ENST00000470076 MFAP4P55083 255 aa12.95□□□□□ -0.34
COL7A1-208ENST00000470076 UCP3P55916 312 aa12.95□□□□□ -0.34
COL7A1-208ENST00000470076 PMS2P11Q13670 270 aa12.95□□□□□ -0.34
COL7A1-208ENST00000470076 H2BFWTQ7Z2G1 175 aa12.95□□□□□ -0.34
COL7A1-208ENST00000470076 ZNF114Q8NC26 417 aa12.95□□□□□ -0.34
COL7A1-208ENST00000470076 OR4A16Q8NH70 328 aa12.95□□□□□ -0.34
COL7A1-208ENST00000470076 RNF183Q96D59 192 aa12.95□□□□□ -0.34
COL7A1-208ENST00000470076 C6orf62Q9GZU0 229 aaPredicted RBP12.95□□□□□ -0.34
COL7A1-208ENST00000470076 COMMD3Q9UBI1 195 aa12.95□□□□□ -0.34
COL7A1-208ENST00000470076 IGHV7-4-1A0A0J9YVY3 117 aa12.94□□□□□ -0.34
COL7A1-208ENST00000470076 I3L2K1 104 aa12.94□□□□□ -0.34
COL7A1-208ENST00000470076 RCVRNP35243 200 aa12.94□□□□□ -0.34
COL7A1-208ENST00000470076 CMC4P56277 68 aaPredicted RBP12.94□□□□□ -0.34
COL7A1-208ENST00000470076 PRCDQ00LT1 54 aa12.94□□□□□ -0.34
COL7A1-208ENST00000470076 MISP3Q96FF7 219 aa12.94□□□□□ -0.34
COL7A1-208ENST00000470076 OR10C1Q96KK4 312 aa12.94□□□□□ -0.34
COL7A1-208ENST00000470076 RHPN1-AS1Q9BWJ2 59 aa12.94□□□□□ -0.34
COL7A1-208ENST00000470076 CHEK1O14757 476 aa12.93□□□□□ -0.34
COL7A1-208ENST00000470076 YIF1AO95070 293 aa12.93□□□□□ -0.34
COL7A1-208ENST00000470076 TNFAIP8O95379 198 aa12.93□□□□□ -0.34
COL7A1-208ENST00000470076 IGKV1-39P01597 117 aa12.93□□□□□ -0.34
COL7A1-208ENST00000470076 IGKV1D-39P04432 117 aa12.93□□□□□ -0.34
COL7A1-208ENST00000470076 RPL35AP18077 110 aaKnown RBP12.93□□□□□ -0.34
COL7A1-208ENST00000470076 HSPE1P61604 102 aaKnown RBP12.93□□□□□ -0.34
COL7A1-208ENST00000470076 EWSR1Q01844 656 aaKnown RBP eCLIP12.93□□□□□ -0.34
COL7A1-208ENST00000470076 SNX29P2Q8IUI4 249 aa12.93□□□□□ -0.34
COL7A1-208ENST00000470076 TMEM217Q8N7C4 229 aa12.93□□□□□ -0.34
COL7A1-208ENST00000470076 TMEM116Q8NCL8 245 aa12.93□□□□□ -0.34
COL7A1-208ENST00000470076 ZNF414Q96IQ9 312 aa12.93□□□□□ -0.34
COL7A1-208ENST00000470076 RNF2Q99496 336 aa12.93□□□□□ -0.34
COL7A1-208ENST00000470076 NXF2Q9GZY0 626 aaKnown RBP12.93□□□□□ -0.34
COL7A1-208ENST00000470076 MAP6D1Q9H9H5 199 aa12.93□□□□□ -0.34
COL7A1-208ENST00000470076 MT-CO2P00403 227 aa12.92□□□□□ -0.34
COL7A1-208ENST00000470076 ERHP84090 104 aaKnown RBP12.92□□□□□ -0.34
COL7A1-208ENST00000470076 CEMP1Q6PRD7 247 aaPredicted RBP12.92□□□□□ -0.34
COL7A1-208ENST00000470076 MRGPRFQ96AM1 343 aa12.92□□□□□ -0.34
COL7A1-208ENST00000470076 TRAV14DV4A0A0A6YYC5 116 aa12.91□□□□□ -0.34
COL7A1-208ENST00000470076 GNG7O60262 68 aa12.91□□□□□ -0.34
COL7A1-208ENST00000470076 LY6G6CO95867 125 aa12.91□□□□□ -0.34
COL7A1-208ENST00000470076 NCS1P62166 190 aa12.91□□□□□ -0.34
COL7A1-208ENST00000470076 APRG1Q8IVJ8 170 aa12.91□□□□□ -0.34
COL7A1-208ENST00000470076 CD5P06127 495 aa12.9□□□□□ -0.34
COL7A1-208ENST00000470076 ELK1P19419 428 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms