RNA–Protein interactions for RNA: ENST00000464635.1

USP54-209, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 531 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-209ENST00000464635 DIAPH2-AS1Q14236 149 aa9.41□□□□□ -0.9
USP54-209ENST00000464635 LRRC75BQ2VPJ9 315 aa9.41□□□□□ -0.9
USP54-209ENST00000464635 C2orf83Q53S99 150 aa9.41□□□□□ -0.9
USP54-209ENST00000464635 SPANXN5Q5MJ07 72 aa9.41□□□□□ -0.9
USP54-209ENST00000464635 SSX9Q7RTT3 188 aa9.41□□□□□ -0.9
USP54-209ENST00000464635 CFHR4Q92496 578 aa9.41□□□□□ -0.9
USP54-209ENST00000464635 ZNF747Q9BV97 191 aa9.41□□□□□ -0.9
USP54-209ENST00000464635 TMEM147Q9BVK8 224 aa9.41□□□□□ -0.9
USP54-209ENST00000464635 COMMD5Q9GZQ3 224 aa9.41□□□□□ -0.9
USP54-209ENST00000464635 TNFRSF19Q9NS68 423 aa9.41□□□□□ -0.9
USP54-209ENST00000464635 TRAV3A0A0B4J244 114 aa9.4□□□□□ -0.9
USP54-209ENST00000464635 C15orf62A8K5M9 175 aa9.4□□□□□ -0.9
USP54-209ENST00000464635 ATP6V1G1O75348 118 aa9.4□□□□□ -0.9
USP54-209ENST00000464635 CST7O76096 145 aa9.4□□□□□ -0.9
USP54-209ENST00000464635 MOSP00540 346 aa9.4□□□□□ -0.9
USP54-209ENST00000464635 COX7A1P24310 79 aa9.4□□□□□ -0.9
USP54-209ENST00000464635 REG1BP48304 166 aa9.4□□□□□ -0.9
USP54-209ENST00000464635 DLK1P80370 383 aa9.4□□□□□ -0.9
USP54-209ENST00000464635 ERHP84090 104 aaKnown RBP9.4□□□□□ -0.9
USP54-209ENST00000464635 PVRIGQ6DKI7 326 aa9.4□□□□□ -0.9
USP54-209ENST00000464635 MOB3BQ86TA1 216 aa9.4□□□□□ -0.9
USP54-209ENST00000464635 VKORC1L1Q8N0U8 176 aa9.4□□□□□ -0.9
USP54-209ENST00000464635 COMMD1Q8N668 190 aa9.4□□□□□ -0.9
USP54-209ENST00000464635 ZNF114Q8NC26 417 aa9.4□□□□□ -0.9
USP54-209ENST00000464635 OR2G3Q8NGZ4 309 aa9.4□□□□□ -0.9
USP54-209ENST00000464635 OR2T10Q8NGZ9 312 aa9.4□□□□□ -0.9
USP54-209ENST00000464635 SGMS2Q8NHU3 365 aa9.4□□□□□ -0.9
USP54-209ENST00000464635 CACNG8Q8WXS5 425 aa9.4□□□□□ -0.9
USP54-209ENST00000464635 PRDM13Q9H4Q3 707 aa9.4□□□□□ -0.9
USP54-209ENST00000464635 PLEKHA3Q9HB20 300 aa9.4□□□□□ -0.9
USP54-209ENST00000464635 HEYLQ9NQ87 328 aaPredicted RBP9.4□□□□□ -0.9
USP54-209ENST00000464635 PARP11Q9NR21 331 aa9.4□□□□□ -0.9
USP54-209ENST00000464635 SIRT7Q9NRC8 400 aa9.4□□□□□ -0.9
USP54-209ENST00000464635 SIGLEC9Q9Y336 463 aa9.4□□□□□ -0.9
USP54-209ENST00000464635 MGAM2Q2M2H8 2515 aa9.39□□□□□ -0.91
USP54-209ENST00000464635 CENPVL3A0A0U1RRI6 287 aa9.39□□□□□ -0.91
USP54-209ENST00000464635 RAB19A4D1S5 217 aa9.39□□□□□ -0.91
USP54-209ENST00000464635 PRSS46E5RG02 174 aa9.39□□□□□ -0.91
USP54-209ENST00000464635 SNRNP70P08621 437 aaKnown RBP9.39□□□□□ -0.91
USP54-209ENST00000464635 METTL15P1P0C7V9 234 aa9.39□□□□□ -0.91
USP54-209ENST00000464635 BRS3P32247 399 aa9.39□□□□□ -0.91
USP54-209ENST00000464635 GPX4P36969 197 aaPredicted RBP9.39□□□□□ -0.91
USP54-209ENST00000464635 SUB1P53999 127 aaKnown RBP eCLIP9.39□□□□□ -0.91
USP54-209ENST00000464635 OR2B8PP59922 312 aa9.39□□□□□ -0.91
USP54-209ENST00000464635 PRB3Q04118 309 aaPredicted RBP9.39□□□□□ -0.91
USP54-209ENST00000464635 SLC38A11Q08AI6 406 aa9.39□□□□□ -0.91
USP54-209ENST00000464635 PSG5Q15238 335 aa9.39□□□□□ -0.91
USP54-209ENST00000464635 AANATQ16613 207 aa9.39□□□□□ -0.91
USP54-209ENST00000464635 PRSS8Q16651 343 aa9.39□□□□□ -0.91
USP54-209ENST00000464635 LDLRAD2Q5SZI1 272 aa9.39□□□□□ -0.91
USP54-209ENST00000464635 HAPLN4Q86UW8 402 aa9.39□□□□□ -0.91
USP54-209ENST00000464635 PPP1R27Q86WC6 154 aa9.39□□□□□ -0.91
USP54-209ENST00000464635 SLC24A4Q8NFF2 622 aa9.39□□□□□ -0.91
USP54-209ENST00000464635 SCGB1C1Q8TD33 95 aa9.39□□□□□ -0.91
USP54-209ENST00000464635 TMED6Q8WW62 240 aa9.39□□□□□ -0.91
USP54-209ENST00000464635 ZDHHC16Q969W1 377 aa9.39□□□□□ -0.91
USP54-209ENST00000464635 BSCL2Q96G97 398 aaPredicted RBP9.39□□□□□ -0.91
USP54-209ENST00000464635 OR4C12Q96R67 309 aa9.39□□□□□ -0.91
USP54-209ENST00000464635 WDR61Q9GZS3 305 aaKnown RBP9.39□□□□□ -0.91
USP54-209ENST00000464635 MEGF9Q9H1U4 602 aa9.39□□□□□ -0.91
USP54-209ENST00000464635 UQCC1Q9NVA1 299 aa9.39□□□□□ -0.91
USP54-209ENST00000464635 C1RLQ9NZP8 487 aa9.39□□□□□ -0.91
USP54-209ENST00000464635 PFDN2Q9UHV9 154 aa9.39□□□□□ -0.91
USP54-209ENST00000464635 MEGF8Q7Z7M0 2845 aa9.39□□□□□ -0.91
USP54-209ENST00000464635 RRHO14718 337 aa9.38□□□□□ -0.91
USP54-209ENST00000464635 TIMM23O14925 209 aa9.38□□□□□ -0.91
USP54-209ENST00000464635 IFNA10P01566 189 aa9.38□□□□□ -0.91
USP54-209ENST00000464635 MBP02144 154 aa9.38□□□□□ -0.91
USP54-209ENST00000464635 NPY1RP25929 384 aa9.38□□□□□ -0.91
USP54-209ENST00000464635 ATP6V0CP27449 155 aa9.38□□□□□ -0.91
USP54-209ENST00000464635 HOXA1P49639 335 aaPredicted RBP9.38□□□□□ -0.91
USP54-209ENST00000464635 DLX1P56177 255 aa9.38□□□□□ -0.91
USP54-209ENST00000464635 ARL16Q0P5N6 197 aa9.38□□□□□ -0.91
USP54-209ENST00000464635 MRGPRG-AS1Q2M3A8 158 aa9.38□□□□□ -0.91
USP54-209ENST00000464635 UQCC3Q6UW78 93 aa9.38□□□□□ -0.91
USP54-209ENST00000464635 SHISA2Q6UWI4 295 aa9.38□□□□□ -0.91
USP54-209ENST00000464635 Q6YL49 198 aa9.38□□□□□ -0.91
USP54-209ENST00000464635 ETV3LQ6ZN32 361 aa9.38□□□□□ -0.91
USP54-209ENST00000464635 LILRB2Q8N423 598 aa9.38□□□□□ -0.91
USP54-209ENST00000464635 Q8N6K4 173 aa9.38□□□□□ -0.91
USP54-209ENST00000464635 OR1L6Q8NGR2 347 aa9.38□□□□□ -0.91
USP54-209ENST00000464635 RNASEH2CQ8TDP1 164 aaKnown RBP9.38□□□□□ -0.91
USP54-209ENST00000464635 SMIM3Q9BZL3 60 aa9.38□□□□□ -0.91
USP54-209ENST00000464635 ZNF430Q9H8G1 570 aaPredicted RBP9.38□□□□□ -0.91
USP54-209ENST00000464635 IGHV1-69DA0A0B4J2H0 117 aa9.37□□□□□ -0.91
USP54-209ENST00000464635 A0A0U1RQK1 487 aa9.37□□□□□ -0.91
USP54-209ENST00000464635 BTBD17A6NE02 478 aa9.37□□□□□ -0.91
USP54-209ENST00000464635 FAM181BA6NEQ2 426 aa9.37□□□□□ -0.91
USP54-209ENST00000464635 WIPF1O43516 503 aa9.37□□□□□ -0.91
USP54-209ENST00000464635 NXPH3O95157 252 aa9.37□□□□□ -0.91
USP54-209ENST00000464635 IGHV1-69P01742 117 aa9.37□□□□□ -0.91
USP54-209ENST00000464635 FAM106CPP0CH98 169 aa9.37□□□□□ -0.91
USP54-209ENST00000464635 CLINT1Q14677 625 aa9.37□□□□□ -0.91
USP54-209ENST00000464635 PRR31Q5SQ13 230 aa9.37□□□□□ -0.91
USP54-209ENST00000464635 IL34Q6ZMJ4 242 aa9.37□□□□□ -0.91
USP54-209ENST00000464635 TMEM217Q8N7C4 229 aa9.37□□□□□ -0.91
USP54-209ENST00000464635 AJUBAQ96IF1 538 aa9.37□□□□□ -0.91
USP54-209ENST00000464635 SMDT1Q9H4I9 107 aa9.37□□□□□ -0.91
USP54-209ENST00000464635 NPVFQ9HCQ7 196 aa9.37□□□□□ -0.91
USP54-209ENST00000464635 KIAA1456Q9P272 454 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms