RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 TGFBR1P36897 503 aa11.9□□□□□ -0.5
COL7A1-204ENST00000462475 Q56UQ5 140 aa11.9□□□□□ -0.5
COL7A1-204ENST00000462475 DHRS11Q6UWP2 260 aa11.9□□□□□ -0.5
COL7A1-204ENST00000462475 KIR2DL5AQ8N109 375 aa11.9□□□□□ -0.5
COL7A1-204ENST00000462475 STPG3Q8N7X2 389 aa11.9□□□□□ -0.5
COL7A1-204ENST00000462475 KIR2DL5BQ8NHK3 375 aa11.9□□□□□ -0.5
COL7A1-204ENST00000462475 RNF183Q96D59 192 aa11.9□□□□□ -0.5
COL7A1-204ENST00000462475 DGCR14Q96DF8 476 aaKnown RBP11.9□□□□□ -0.5
COL7A1-204ENST00000462475 ATP6V0BQ99437 205 aa11.9□□□□□ -0.5
COL7A1-204ENST00000462475 K7EMT4 169 aa11.89□□□□□ -0.51
COL7A1-204ENST00000462475 FCGR2BP31994 310 aaPredicted RBP11.89□□□□□ -0.51
COL7A1-204ENST00000462475 OR5B3Q8NH48 314 aa11.89□□□□□ -0.51
COL7A1-204ENST00000462475 C15orf62A8K5M9 175 aa11.88□□□□□ -0.51
COL7A1-204ENST00000462475 SNAPC5O75971 98 aa11.88□□□□□ -0.51
COL7A1-204ENST00000462475 CTSGP08311 255 aa11.88□□□□□ -0.51
COL7A1-204ENST00000462475 ATF4P18848 351 aaPredicted RBP11.88□□□□□ -0.51
COL7A1-204ENST00000462475 TAS2R20P59543 309 aa11.88□□□□□ -0.51
COL7A1-204ENST00000462475 ZNF124Q15973 351 aa11.88□□□□□ -0.51
COL7A1-204ENST00000462475 UBE2NLQ5JXB2 153 aa11.88□□□□□ -0.51
COL7A1-204ENST00000462475 APRG1Q8IVJ8 170 aa11.88□□□□□ -0.51
COL7A1-204ENST00000462475 CADM3Q8N126 398 aa11.88□□□□□ -0.51
COL7A1-204ENST00000462475 TSPAN14Q8NG11 270 aa11.88□□□□□ -0.51
COL7A1-204ENST00000462475 OR5H2Q8NGV7 314 aa11.88□□□□□ -0.51
COL7A1-204ENST00000462475 S100A16Q96FQ6 103 aaKnown RBP11.88□□□□□ -0.51
COL7A1-204ENST00000462475 RNF2Q99496 336 aa11.88□□□□□ -0.51
COL7A1-204ENST00000462475 MAP6D1Q9H9H5 199 aa11.88□□□□□ -0.51
COL7A1-204ENST00000462475 SMPXQ9UHP9 88 aa11.88□□□□□ -0.51
COL7A1-204ENST00000462475 PRNDQ9UKY0 176 aa11.88□□□□□ -0.51
COL7A1-204ENST00000462475 IGHV3-49A0A0A0MS15 119 aa11.87□□□□□ -0.51
COL7A1-204ENST00000462475 C15orf61A6NNL5 157 aa11.87□□□□□ -0.51
COL7A1-204ENST00000462475 GPR31O00270 319 aa11.87□□□□□ -0.51
COL7A1-204ENST00000462475 TMEM127O75204 238 aa11.87□□□□□ -0.51
COL7A1-204ENST00000462475 NAT1P18440 290 aa11.87□□□□□ -0.51
COL7A1-204ENST00000462475 TAS2R46P59540 309 aa11.87□□□□□ -0.51
COL7A1-204ENST00000462475 PHLDA2Q53GA4 152 aa11.87□□□□□ -0.51
COL7A1-204ENST00000462475 TMEM69Q5SWH9 247 aa11.87□□□□□ -0.51
COL7A1-204ENST00000462475 CMTM1Q8IZ96 169 aa11.87□□□□□ -0.51
COL7A1-204ENST00000462475 GALNT14Q96FL9 552 aa11.87□□□□□ -0.51
COL7A1-204ENST00000462475 TMEM56Q96MV1 263 aa11.87□□□□□ -0.51
COL7A1-204ENST00000462475 TMEM14BQ9NUH8 114 aa11.87□□□□□ -0.51
COL7A1-204ENST00000462475 IGHV7-4-1A0A0J9YVY3 117 aa11.86□□□□□ -0.51
COL7A1-204ENST00000462475 CHEK1O14757 476 aa11.86□□□□□ -0.51
COL7A1-204ENST00000462475 TNFAIP8O95379 198 aa11.86□□□□□ -0.51
COL7A1-204ENST00000462475 HRH1P35367 487 aa11.86□□□□□ -0.51
COL7A1-204ENST00000462475 TFPI2P48307 235 aa11.86□□□□□ -0.51
COL7A1-204ENST00000462475 RPP25LQ8N5L8 163 aaKnown RBP11.86□□□□□ -0.51
COL7A1-204ENST00000462475 SAMD12Q8N8I0 201 aa11.86□□□□□ -0.51
COL7A1-204ENST00000462475 OR1P1Q8NH06 330 aa11.86□□□□□ -0.51
COL7A1-204ENST00000462475 SLC25A46Q96AG3 418 aa11.86□□□□□ -0.51
COL7A1-204ENST00000462475 RHPN1-AS1Q9BWJ2 59 aa11.86□□□□□ -0.51
COL7A1-204ENST00000462475 BATF3Q9NR55 127 aa11.86□□□□□ -0.51
COL7A1-204ENST00000462475 KLK5Q9Y337 293 aaPredicted RBP11.86□□□□□ -0.51
COL7A1-204ENST00000462475 HERC2O95714 4834 aa11.85□□□□□ -0.51
COL7A1-204ENST00000462475 IGKV3-7A0A075B6H7 116 aa11.85□□□□□ -0.51
COL7A1-204ENST00000462475 I3L2K1 104 aa11.85□□□□□ -0.51
COL7A1-204ENST00000462475 IGHV3-48P01763 117 aa11.85□□□□□ -0.51
COL7A1-204ENST00000462475 HLA-DMAP28067 261 aa11.85□□□□□ -0.51
COL7A1-204ENST00000462475 RELQ04864 619 aaPredicted RBP11.85□□□□□ -0.51
COL7A1-204ENST00000462475 CROCCP3Q8IVE0 287 aa11.85□□□□□ -0.51
COL7A1-204ENST00000462475 TMEM217Q8N7C4 229 aa11.85□□□□□ -0.51
COL7A1-204ENST00000462475 TMEM116Q8NCL8 245 aa11.85□□□□□ -0.51
COL7A1-204ENST00000462475 OR6F1Q8NGZ6 308 aa11.85□□□□□ -0.51
COL7A1-204ENST00000462475 PHLDA1Q8WV24 401 aaPredicted RBP11.85□□□□□ -0.51
COL7A1-204ENST00000462475 MISP3Q96FF7 219 aa11.85□□□□□ -0.51
COL7A1-204ENST00000462475 TSC22D3Q99576 134 aa11.85□□□□□ -0.51
COL7A1-204ENST00000462475 FKBP11Q9NYL4 201 aa11.85□□□□□ -0.51
COL7A1-204ENST00000462475 HECTD4Q9Y4D8 3996 aa11.85□□□□□ -0.51
COL7A1-204ENST00000462475 IGHV3OR16-13A0A075B7E8 117 aa11.84□□□□□ -0.51
COL7A1-204ENST00000462475 IGHV3-74A0A0B4J1X5 117 aa11.84□□□□□ -0.51
COL7A1-204ENST00000462475 NUPL2O15504 423 aaKnown RBP11.84□□□□□ -0.51
COL7A1-204ENST00000462475 YIF1AO95070 293 aa11.84□□□□□ -0.51
COL7A1-204ENST00000462475 IGKV1-39P01597 117 aa11.84□□□□□ -0.51
COL7A1-204ENST00000462475 IGKV1D-39P04432 117 aa11.84□□□□□ -0.51
COL7A1-204ENST00000462475 RPS19P39019 145 aaKnown RBP11.84□□□□□ -0.51
COL7A1-204ENST00000462475 KCTD21Q4G0X4 260 aa11.84□□□□□ -0.51
COL7A1-204ENST00000462475 LYSMD2Q8IV50 215 aa11.84□□□□□ -0.51
COL7A1-204ENST00000462475 SEC22AQ96IW7 307 aa11.84□□□□□ -0.51
COL7A1-204ENST00000462475 OR10C1Q96KK4 312 aa11.84□□□□□ -0.51
COL7A1-204ENST00000462475 VPS13DQ5THJ4 4388 aa11.83□□□□□ -0.51
COL7A1-204ENST00000462475 DEDDO75618 318 aa11.83□□□□□ -0.52
COL7A1-204ENST00000462475 MT-CO2P00403 227 aa11.83□□□□□ -0.52
COL7A1-204ENST00000462475 PRSS3P35030 304 aa11.83□□□□□ -0.52
COL7A1-204ENST00000462475 MFAP4P55083 255 aa11.83□□□□□ -0.52
COL7A1-204ENST00000462475 LSM3P62310 102 aaKnown RBP11.83□□□□□ -0.52
COL7A1-204ENST00000462475 FAM90A2PQ658T7 463 aa11.83□□□□□ -0.52
COL7A1-204ENST00000462475 TBC1D26Q86UD7 250 aa11.83□□□□□ -0.52
COL7A1-204ENST00000462475 ZNF114Q8NC26 417 aa11.83□□□□□ -0.52
COL7A1-204ENST00000462475 C6orf62Q9GZU0 229 aaPredicted RBP11.83□□□□□ -0.52
COL7A1-204ENST00000462475 NXF2Q9GZY0 626 aaKnown RBP11.83□□□□□ -0.52
COL7A1-204ENST00000462475 CSTL1Q9H114 145 aa11.83□□□□□ -0.52
COL7A1-204ENST00000462475 EIF4EP06730 217 aaKnown RBP11.82□□□□□ -0.52
COL7A1-204ENST00000462475 PRCDQ00LT1 54 aa11.82□□□□□ -0.52
COL7A1-204ENST00000462475 GBGT1Q8N5D6 347 aa11.82□□□□□ -0.52
COL7A1-204ENST00000462475 OR4A16Q8NH70 328 aa11.82□□□□□ -0.52
COL7A1-204ENST00000462475 GPX8Q8TED1 209 aa11.82□□□□□ -0.52
COL7A1-204ENST00000462475 MRGPRFQ96AM1 343 aa11.82□□□□□ -0.52
COL7A1-204ENST00000462475 FAM212BQ9NTI7 297 aaPredicted RBP11.82□□□□□ -0.52
COL7A1-204ENST00000462475 TRAV14DV4A0A0A6YYC5 116 aa11.81□□□□□ -0.52
COL7A1-204ENST00000462475 MPTX1A8MV57 137 aa11.81□□□□□ -0.52
COL7A1-204ENST00000462475 NANOS2P60321 138 aaKnown RBP11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms